10 20 30 40 50 60 70 80 1KEF - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PROTEIN BINDING 15-NOV-01 1KEF
TITLE PDZ1 OF SAP90
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNAPSE ASSOCIATED PROTEIN-90; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ1 DOMAIN; COMPND 5 SYNONYM: (SAP90), PRESYNAPTIC DENSITY PROTEIN 95, PSD-95; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS BETA-SHEET, ANTI-PARALLEL BETA-SANDWICH, GLGF LOOP, PROTEIN KEYWDS 2 BINDING
EXPDTA SOLUTION NMR
AUTHOR A.PISERCHIO,M.PELLEGRINI,S.MEHTA,S.M.BLACKMAN,E.P.GARCIA, AUTHOR 2 J.MARSHALL,D.F.MIERKE
REVDAT 2 24-FEB-09 1KEF 1 VERSN REVDAT 1 06-MAR-02 1KEF 0
JRNL AUTH A.PISERCHIO,M.PELLEGRINI,S.MEHTA,S.M.BLACKMAN, JRNL AUTH 2 E.P.GARCIA,J.MARSHALL,D.F.MIERKE JRNL TITL THE PDZ1 DOMAIN OF SAP90. CHARACTERIZATION OF JRNL TITL 2 STRUCTURE AND BINDING. JRNL REF J.BIOL.CHEM. V. 277 6967 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 11744724 JRNL DOI 10.1074/JBC.M109453200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR CNS REMARK 3 AUTHORS : BRUENGER, A. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1KEF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-NOV-01. REMARK 100 THE RCSB ID CODE IS RCSB014866.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 150 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM PROTEIN, 10 MM REMARK 210 PHOSPHATE BUFFER, 150 MM NACL, REMARK 210 PH 6.8 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 3.0 REMARK 210 METHOD USED : SIMULATED ANNEALING WITH REMARK 210 TORSION ANGLE RESTRAINTS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : AVERAGE STRUCTURE FROM REMARK 210 ENSEMBLE OF 28 STRUCTURES, REMARK 210 CHOSEN BY ENERGY AND PENALTY REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 69 CG HIS A 69 CD2 0.058 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 HIS A 26 ND1 - CE1 - NE2 ANGL. DEV. = 8.0 DEGREES REMARK 500 ARG A 49 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 51 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 65 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 65 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 HIS A 69 ND1 - CE1 - NE2 ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG A 84 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 89 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 90 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 12 -139.58 70.21 REMARK 500 LEU A 14 -72.19 -121.55 REMARK 500 ASP A 23 -53.94 -123.65 REMARK 500 PRO A 25 90.98 -60.31 REMARK 500 ASP A 29 -62.24 -158.97 REMARK 500 THR A 36 -72.05 -103.43 REMARK 500 ALA A 43 -43.92 175.95 REMARK 500 ARG A 49 -35.34 -144.07 REMARK 500 PHE A 58 73.76 -162.92 REMARK 500 ASN A 60 -144.17 66.57 REMARK 500 GLU A 61 59.50 -94.68 REMARK 500 ARG A 65 -49.67 -179.15 REMARK 500 LYS A 91 -63.97 -148.50 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1KEF A 1 93 UNP P78352 DLG4_HUMAN 105 197
SEQRES 1 A 93 GLU TYR GLU GLU ILE THR LEU GLU ARG GLY ASN SER GLY SEQRES 2 A 93 LEU GLY PHE SER ILE ALA GLY GLY THR ASP ASN PRO HIS SEQRES 3 A 93 ILE GLY ASP ASP PRO SER ILE PHE ILE THR LYS ILE ILE SEQRES 4 A 93 PRO GLY GLY ALA ALA ALA GLN ASP GLY ARG LEU ARG VAL SEQRES 5 A 93 ASN ASP SER ILE LEU PHE VAL ASN GLU VAL ASP VAL ARG SEQRES 6 A 93 GLU VAL THR HIS SER ALA ALA VAL GLU ALA LEU LYS GLU SEQRES 7 A 93 ALA GLY SER ILE VAL ARG LEU TYR VAL MET ARG ARG LYS SEQRES 8 A 93 PRO PRO
HELIX 1 1 ALA A 43 GLY A 48 1 6 HELIX 2 2 THR A 68 GLY A 80 1 13
SHEET 1 A 2 GLU A 3 LEU A 7 0 SHEET 2 A 2 VAL A 83 VAL A 87 -1 O VAL A 83 N LEU A 7 SHEET 1 B 3 PHE A 16 ALA A 19 0 SHEET 2 B 3 ILE A 33 ILE A 38 -1 O THR A 36 N SER A 17 SHEET 3 B 3 SER A 55 ILE A 56 -1 O ILE A 56 N ILE A 33
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000