10 20 30 40 50 60 70 80 1KB8 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER FIMBRIAL PROTEIN 05-OCT-95 1KB8
TITLE A COMPARISON OF NMR SOLUTION STRUCTURES OF THE RECEPTOR TITLE 2 BINDING DOMAINS OF PSEUDOMONAS AERUGINOSA PILI STRAINS PAO, TITLE 3 KB7, AND PAK: IMPLICATIONS FOR RECEPTOR BINDING AND TITLE 4 SYNTHETIC VACCINE DESIGN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: KB7 PILIN, TRANS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FIMBRIAL PROTEIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 STRAIN: KB7
KEYWDS FIMBRIAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 33
AUTHOR A.P.CAMPBELL,C.MCINNES,R.S.HODGES,B.D.SYKES
REVDAT 2 24-FEB-09 1KB8 1 VERSN REVDAT 1 29-JAN-96 1KB8 0
JRNL AUTH A.P.CAMPBELL,C.MCINNES,R.S.HODGES,B.D.SYKES JRNL TITL COMPARISON OF NMR SOLUTION STRUCTURES OF THE JRNL TITL 2 RECEPTOR BINDING DOMAINS OF PSEUDOMONAS AERUGINOSA JRNL TITL 3 PILI STRAINS PAO, KB7, AND PAK: IMPLICATIONS FOR JRNL TITL 4 RECEPTOR BINDING AND SYNTHETIC VACCINE DESIGN. JRNL REF BIOCHEMISTRY V. 34 16255 1995 JRNL REFN ISSN 0006-2960 JRNL PMID 8845350 JRNL DOI 10.1021/BI00050A005
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.MCINNES,C.M.KAY,R.S.HODGES,B.D.SYKES REMARK 1 TITL CONFORMATIONAL DIFFERENCES BETWEEN CIS AND TRANS REMARK 1 TITL 2 PROLINE ISOMERS OF A PEPTIDE ANTIGEN REPRESENTING REMARK 1 TITL 3 THE RECEPTOR BINDING DOMAIN OF PSEUDOMONAS REMARK 1 TITL 4 AERUGINOSA AS STUDIED BY 1H NMR REMARK 1 REF BIOPOLYMERS V. 34 1221 1994 REMARK 1 REFN ISSN 0006-3525 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.MCINNES,F.D.SOENNICHSEN,C.M.KAY,R.S.HODGES, REMARK 1 AUTH 2 B.D.SYKES REMARK 1 TITL NMR SOLUTION STRUCTURE AND FLEXIBILITY OF A REMARK 1 TITL 2 PEPTIDE ANTIGEN REPRESENTING THE RECEPTOR BINDING REMARK 1 TITL 3 DOMAIN OF PSEUDOMONAS AERUGINOSA REMARK 1 REF BIOCHEMISTRY V. 32 13432 1993 REMARK 1 REFN ISSN 0006-2960
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PEPFLEX II REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1KB8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 33 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 ASP A 144 C ASP A 144 OXT 0.143 REMARK 500 2 ASP A 144 C ASP A 144 OXT 0.147 REMARK 500 3 ASP A 144 C ASP A 144 OXT 0.146 REMARK 500 4 ASP A 144 C ASP A 144 OXT 0.146 REMARK 500 5 ASP A 144 C ASP A 144 OXT 0.143 REMARK 500 6 ASP A 144 C ASP A 144 OXT 0.143 REMARK 500 7 ASP A 144 C ASP A 144 OXT 0.143 REMARK 500 8 ASP A 144 C ASP A 144 OXT 0.146 REMARK 500 9 ASP A 144 C ASP A 144 OXT 0.145 REMARK 500 10 ASP A 144 C ASP A 144 OXT 0.143 REMARK 500 11 ASP A 144 C ASP A 144 OXT 0.143 REMARK 500 12 ASP A 144 C ASP A 144 OXT 0.142 REMARK 500 13 ASP A 144 C ASP A 144 OXT 0.143 REMARK 500 14 ASP A 144 C ASP A 144 OXT 0.147 REMARK 500 15 ASP A 144 C ASP A 144 OXT 0.144 REMARK 500 16 ASP A 144 C ASP A 144 OXT 0.142 REMARK 500 17 ASP A 144 C ASP A 144 OXT 0.144 REMARK 500 18 ASP A 144 C ASP A 144 OXT 0.146 REMARK 500 19 ASP A 144 C ASP A 144 OXT 0.146 REMARK 500 20 ASP A 144 C ASP A 144 OXT 0.147 REMARK 500 21 ASP A 144 C ASP A 144 OXT 0.143 REMARK 500 22 ASP A 144 C ASP A 144 OXT 0.143 REMARK 500 23 ASP A 144 C ASP A 144 OXT 0.142 REMARK 500 24 ASP A 144 C ASP A 144 OXT 0.143 REMARK 500 25 ASP A 144 C ASP A 144 OXT 0.146 REMARK 500 26 ASP A 144 C ASP A 144 OXT 0.144 REMARK 500 27 ASP A 144 C ASP A 144 OXT 0.147 REMARK 500 28 ASP A 144 C ASP A 144 OXT 0.143 REMARK 500 29 ASP A 144 C ASP A 144 OXT 0.146 REMARK 500 30 ASP A 144 C ASP A 144 OXT 0.146 REMARK 500 31 ASP A 144 C ASP A 144 OXT 0.143 REMARK 500 32 ASP A 144 C ASP A 144 OXT 0.147 REMARK 500 33 ASP A 144 C ASP A 144 OXT 0.142 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ASP A 134 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 1 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 ASP A 144 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 2 ASP A 134 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 2 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 ASP A 144 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 3 ASP A 134 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 3 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 ASP A 144 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 4 ASP A 134 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 4 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 4 ASP A 144 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 5 ASP A 134 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 5 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 5 ASP A 144 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 6 ASP A 134 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 6 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 6 ASP A 144 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 7 ASP A 134 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 7 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 7 ASP A 144 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 8 ASP A 134 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 8 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 8 ASP A 144 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 9 ASP A 134 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 9 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 9 ASP A 144 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 10 ASP A 134 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 10 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 10 ASP A 144 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 11 ASP A 134 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 11 ASP A 134 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 11 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 11 ASP A 144 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 12 ASP A 134 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 12 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 12 ASP A 144 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 13 ASP A 134 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 13 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 13 ASP A 144 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 14 ASP A 134 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 14 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 14 ASP A 144 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 15 ASP A 134 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 15 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 15 ASP A 144 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 16 ASP A 134 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 16 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 16 ASP A 144 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 17 ASP A 134 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 104 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 129 -83.33 -78.70 REMARK 500 1 THR A 131 -63.77 -140.81 REMARK 500 1 VAL A 133 -94.01 -84.35 REMARK 500 2 THR A 131 -69.41 -129.54 REMARK 500 3 THR A 131 -55.70 -138.53 REMARK 500 3 CYS A 142 -68.57 -96.92 REMARK 500 4 THR A 131 -67.89 -130.42 REMARK 500 5 THR A 131 -66.47 -106.48 REMARK 500 6 THR A 131 -55.19 -129.82 REMARK 500 7 THR A 131 -79.18 -130.49 REMARK 500 8 THR A 131 -68.35 -130.67 REMARK 500 9 THR A 132 -98.67 -88.79 REMARK 500 9 VAL A 133 84.99 -162.30 REMARK 500 9 ASP A 134 87.91 -150.97 REMARK 500 10 CYS A 129 -72.05 -75.10 REMARK 500 10 THR A 132 -88.83 -85.15 REMARK 500 10 VAL A 133 52.48 -154.03 REMARK 500 11 THR A 131 -68.84 -135.25 REMARK 500 12 THR A 131 -63.72 -148.11 REMARK 500 12 THR A 143 -66.04 -96.13 REMARK 500 13 THR A 131 -80.50 -127.15 REMARK 500 13 CYS A 142 -77.73 -99.78 REMARK 500 16 THR A 131 -68.98 -141.86 REMARK 500 17 THR A 131 -80.04 -130.36 REMARK 500 18 THR A 131 -68.93 -134.99 REMARK 500 19 THR A 131 -70.92 -133.36 REMARK 500 19 CYS A 142 -69.79 -90.76 REMARK 500 20 THR A 131 -52.72 -137.36 REMARK 500 20 VAL A 133 75.00 -100.25 REMARK 500 20 ASP A 134 117.01 -164.16 REMARK 500 20 CYS A 142 -75.35 -93.65 REMARK 500 21 THR A 131 -73.27 -133.99 REMARK 500 22 THR A 131 -74.39 -135.55 REMARK 500 22 VAL A 133 97.82 -61.57 REMARK 500 23 THR A 131 -70.87 -142.98 REMARK 500 24 THR A 131 -78.38 -131.87 REMARK 500 25 THR A 131 -71.04 -143.13 REMARK 500 25 ASP A 134 93.95 -170.57 REMARK 500 26 THR A 131 -66.96 -103.78 REMARK 500 26 CYS A 142 -60.59 -125.80 REMARK 500 27 THR A 131 -70.13 -129.81 REMARK 500 28 THR A 131 -75.64 -120.79 REMARK 500 29 THR A 131 -57.18 -132.23 REMARK 500 30 THR A 131 -74.76 -122.54 REMARK 500 32 THR A 131 -78.17 -132.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 143 ASP A 144 28 -95.90 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACE A 127
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KB7 RELATED DB: PDB
DBREF 1KB8 A 128 144 UNP Q53391 FMK7_PSEAE 7 23
SEQRES 1 A 18 ACE SER CYS ALA THR THR VAL ASP ALA LYS PHE ARG PRO SEQRES 2 A 18 ASN GLY CYS THR ASP
HET ACE A 127 6
HETNAM ACE ACETYL GROUP
FORMUL 1 ACE C2 H4 O
SSBOND 1 CYS A 129 CYS A 142 1555 1555 1.99
LINK C ACE A 127 N SER A 128 1555 1555 1.34
SITE 1 AC1 1 ASP A 144
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000