10 20 30 40 50 60 70 80 1K7O - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RIBONUCLEIC ACID 20-OCT-01 1K7O
TITLE THE INTERACTION BETWEEN MRNA AND TRNA (MODEL 3)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MRNA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: P-SITE TRNA; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: A-SITE TRNA; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 SYNTHETIC: YES
KEYWDS INTERACTION, MRNA, TRNA
EXPDTA THEORETICAL MODEL
AUTHOR C.Q.LIU,S.X.LIU,S.Q.LIU
REVDAT 1 21-NOV-01 1K7O 0
JRNL AUTH C.Q.LIU,S.X.LIU,S.Q.LIU,M.W.JIA,J.HE JRNL TITL THE RESEARCH OF MRNA'S CONFORMATION AND JRNL TITL 2 INTERACTION BETWEEN MRNA AND TRNA IN TRANSLATION JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.Q.LIU,S.X.LIU,S.Q.LIU,M.W.JIA,J.HE REMARK 1 TITL THE TOPOLOGICAL CONFIGURATION AND CONFORMATIONAL REMARK 1 TITL 2 ANALYSIS OF MRNA IN TRANSLATION REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1K7O COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-2001. REMARK 100 THE RCSB ID CODE IS RCSB014663.
REMARK 105 REMARK 105 THE PROTEIN DATA BANK HAS ADOPTED THE SACCHARIDE CHEMISTS REMARK 105 NOMENCLATURE FOR ATOMS OF THE DEOXYRIBOSE/RIBOSE MOIETY REMARK 105 RATHER THAN THAT OF THE NUCLEOSIDE CHEMISTS. THE RING REMARK 105 OXYGEN ATOM IS LABELLED O4* INSTEAD OF O1*.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THIS STRUCTURE IS MODELED BY THEORETICAL METHOD. REMARK 220 BIOPOLYMER MODULE(V.98) OF INSIGHTII TO DO MOLECULAR REMARK 220 MECHANISM AND ADJUST SPATIAL ORIENTATION BETWEEN MRNA REMARK 220 AND TRNAS.
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 N4 OMC C 32 O2P PSU C 39 2.13 REMARK 500 C8 G A 57 O3* U B 36 2.14 REMARK 500 O2* U C 35 O2P C C 36 2.18
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DUH RELATED DB: PDB REMARK 900 1DUH IS THE CRYSTAL SINGLE-STRANDED STRUCTURE OF THE REMARK 900 CONSERVED DOMAIN IV OF E. COLI REMARK 900 RELATED ID: 1EHZ RELATED DB: PDB REMARK 900 1EZH IS THE CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRNA REMARK 900 RELATED ID: 1K7R RELATED DB: PDB REMARK 900 THE INTERACTION BETWEEN MRNA AND TRNA (MODEL 1) REMARK 900 RELATED ID: 1K7O RELATED DB: PDB REMARK 900 THE INTERACTION BETWEEN MRNA AND TRNA (MODEL 3) REMARK 900 RELATED ID: 1K7P RELATED DB: PDB REMARK 900 THE INTERACTION BETWEEN MRNA AND TRNA (MODEL 4)
SEQRES 1 A 44 C U C U G U U U A C C A G SEQRES 2 A 44 G U C A G G U C C G G A A SEQRES 3 A 44 G G A A G C A G C C A A G SEQRES 4 A 44 G C A G A SEQRES 1 B 76 G C G G A U U U A 2MG C U C SEQRES 2 B 76 A G H2U H2U G G G A G A G C M2G SEQRES 3 B 76 C C A G A OMC U C U U YG A PSU SEQRES 4 B 76 5MC U G G A G 7MG U C 5MC U G U SEQRES 5 B 76 G 5MU PSU C G 1MA U C C A C A G SEQRES 6 B 76 A A U U C G C A C C A SEQRES 1 C 76 G C G G A U U U A 2MG C U C SEQRES 2 C 76 A G H2U H2U G G G A G A G C M2G SEQRES 3 C 76 C C A G A OMC U U U C YG A PSU SEQRES 4 C 76 5MC U G G A G 7MG U C 5MC U G U SEQRES 5 C 76 G 5MU PSU C G 1MA U C C A C A G SEQRES 6 C 76 A A U U C G C A C C A
MODRES 1K7O 2MG B 10 G 2N-METHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1K7O H2U B 16 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1K7O H2U B 17 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1K7O M2G B 26 G N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1K7O OMC B 32 C O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE MODRES 1K7O YG B 37 G WYBUTOSINE MODRES 1K7O PSU B 39 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1K7O 5MC B 40 C 5-METHYLCYTIDINE-5'-MONOPHOSPHATE MODRES 1K7O 7MG B 46 G MODRES 1K7O 5MC B 49 C 5-METHYLCYTIDINE-5'-MONOPHOSPHATE MODRES 1K7O 5MU B 54 U 5-METHYLURIDINE 5'-MONOPHOSPHATE MODRES 1K7O PSU B 55 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1K7O 1MA B 58 A MODRES 1K7O 2MG C 10 G 2N-METHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1K7O H2U C 16 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1K7O H2U C 17 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1K7O M2G C 26 G N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1K7O OMC C 32 C O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE MODRES 1K7O YG C 37 G WYBUTOSINE MODRES 1K7O PSU C 39 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1K7O 5MC C 40 C 5-METHYLCYTIDINE-5'-MONOPHOSPHATE MODRES 1K7O 7MG C 46 G MODRES 1K7O 5MC C 49 C 5-METHYLCYTIDINE-5'-MONOPHOSPHATE MODRES 1K7O 5MU C 54 U 5-METHYLURIDINE 5'-MONOPHOSPHATE MODRES 1K7O PSU C 55 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1K7O 1MA C 58 A
HET 2MG B 10 37 HET H2U B 16 32 HET H2U B 17 32 HET M2G B 26 40 HET OMC B 32 34 HET YG B 37 65 HET PSU B 39 30 HET 5MC B 40 34 HET 7MG B 46 38 HET 5MC B 49 34 HET 5MU B 54 33 HET PSU B 55 30 HET 1MA B 58 36 HET 2MG C 10 37 HET H2U C 16 32 HET H2U C 17 32 HET M2G C 26 40 HET OMC C 32 34 HET YG C 37 65 HET PSU C 39 30 HET 5MC C 40 34 HET 7MG C 46 38 HET 5MC C 49 34 HET 5MU C 54 33 HET PSU C 55 30 HET 1MA C 58 36
HETNAM 2MG 2N-METHYLGUANOSINE-5'-MONOPHOSPHATE HETNAM H2U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE HETNAM M2G N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE HETNAM OMC O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE HETNAM YG WYBUTOSINE HETNAM PSU PSEUDOURIDINE-5'-MONOPHOSPHATE HETNAM 5MC 5-METHYLCYTIDINE-5'-MONOPHOSPHATE HETNAM 7MG 7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE HETNAM 5MU 5-METHYLURIDINE 5'-MONOPHOSPHATE HETNAM 1MA 6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
HETSYN YG Y-BASE; 1H-IMIDAZO(1,2-ALPHA)PURINE-7-BUTANOIC ACID,4, HETSYN 2 YG 9-DIHYDRO-ALPHA-((METHOXYCARBONYL)AMINO)-4,6-DIMETHYL- HETSYN 3 YG 9-OXO-METHYL ESTER
FORMUL 2 2MG 2(C11 H16 N5 O8 P) FORMUL 2 H2U 4(C9 H15 N2 O9 P) FORMUL 2 M2G 2(C12 H18 N5 O8 P) FORMUL 2 OMC 2(C10 H16 N3 O8 P) FORMUL 2 YG 2(C21 H29 N6 O12 P) FORMUL 2 PSU 4(C9 H13 N2 O9 P) FORMUL 2 5MC 4(C10 H16 N3 O8 P) FORMUL 2 7MG 2(C11 H18 N5 O8 P) FORMUL 2 5MU 2(C10 H15 N2 O9 P) FORMUL 2 1MA 2(C11 H18 N5 O7 P)
LINK O3* A B 9 P 2MG B 10 LINK O3* 2MG B 10 P C B 11 LINK O3* G B 15 P H2U B 16 LINK O3* H2U B 16 P H2U B 17 LINK O3* H2U B 17 P G B 18 LINK O3* C B 25 P M2G B 26 LINK O3* M2G B 26 P C B 27 LINK O3* A B 31 P OMC B 32 LINK O3* OMC B 32 P U B 33 LINK O3* U B 36 P YG B 37 LINK O3* YG B 37 P A B 38 LINK O3* A B 38 P PSU B 39 LINK O3* PSU B 39 P 5MC B 40 LINK O3* 5MC B 40 P U B 41 LINK O3* G B 45 P 7MG B 46 LINK O3* 7MG B 46 P U B 47 LINK O3* C B 48 P 5MC B 49 LINK O3* 5MC B 49 P U B 50 LINK O3* G B 53 P 5MU B 54 LINK O3* 5MU B 54 P PSU B 55 LINK O3* PSU B 55 P C B 56 LINK O3* G B 57 P 1MA B 58 LINK O3* 1MA B 58 P U B 59 LINK O3* A C 9 P 2MG C 10 LINK O3* 2MG C 10 P C C 11 LINK O3* G C 15 P H2U C 16 LINK O3* H2U C 16 P H2U C 17 LINK O3* H2U C 17 P G C 18 LINK O3* C C 25 P M2G C 26 LINK O3* M2G C 26 P C C 27 LINK O3* A C 31 P OMC C 32 LINK O3* OMC C 32 P U C 33 LINK O3* C C 36 P YG C 37 LINK O3* YG C 37 P A C 38 LINK O3* A C 38 P PSU C 39 LINK O3* PSU C 39 P 5MC C 40 LINK O3* 5MC C 40 P U C 41 LINK O3* G C 45 P 7MG C 46 LINK O3* 7MG C 46 P U C 47 LINK O3* C C 48 P 5MC C 49 LINK O3* 5MC C 49 P U C 50 LINK O3* G C 53 P 5MU C 54 LINK O3* 5MU C 54 P PSU C 55 LINK O3* PSU C 55 P C C 56 LINK O3* G C 57 P 1MA C 58 LINK O3* 1MA C 58 P U C 59
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000