10 20 30 40 50 60 70 80 1K7B - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER MEMBRANE PROTEIN 18-OCT-01 1K7B
TITLE NMR SOLUTION STRUCTURE OF STVA47, THE VIRAL-BINDING DOMAIN TITLE 2 OF TVA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUBGROUP A ROUS SARCOMA VIRUS RECEPTOR PG800 AND COMPND 3 PG950; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: SOLUBLE EXTRACELLULAR VIRAL-BINDING DOMAIN; COMPND 6 SYNONYM: LOW DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COTURNIX COTURNIX; SOURCE 3 ORGANISM_COMMON: COMMON QUAIL; SOURCE 4 ORGANISM_TAXID: 9091; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: MBP-FUSION PMAL
KEYWDS BETA HAIRPIN, 3-10 HELIX, CALCIUM BINDING, MEMBRANE PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR M.TONELLI,R.J.PETERS,T.L.JAMES,D.A.AGARD
REVDAT 3 24-FEB-09 1K7B 1 VERSN REVDAT 2 01-APR-03 1K7B 1 JRNL REVDAT 1 19-DEC-01 1K7B 0
JRNL AUTH M.TONELLI,R.J.PETERS,T.L.JAMES,D.A.AGARD JRNL TITL THE SOLUTION STRUCTURE OF THE VIRAL BINDING DOMAIN JRNL TITL 2 OF TVA, THE CELLULAR RECEPTOR FOR SUBGROUP A AVIAN JRNL TITL 3 LEUKOSIS AND SARCOMA VIRUS. JRNL REF FEBS LETT. V. 509 161 2001 JRNL REFN ISSN 0014-5793 JRNL PMID 11768384 JRNL DOI 10.1016/S0014-5793(01)03086-1
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5, AMBER 6.0 REMARK 3 AUTHORS : GUNTERT (DYANA), KOLLMAN (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1016 NOE-DERIVED RESTRAINTS: 120 REMARK 3 INTRA, 346 SEQUENTIAL, 268 MEDIUM AND 282 LONG-RANGE REMARK 3 RESTRAINTS. THE FIRST 5 RESIDUES (S5-G9) SHOW ONLY INTRA- REMARK 3 RESIDUE AND SEQUENTIAL NOE CONNECTIVITES AND WERE NOT INCLUDED REMARK 3 IN OUR STRUCTURAL CALCULATIONS.
REMARK 4 REMARK 4 1K7B COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-01. REMARK 100 THE RCSB ID CODE IS RCSB014650.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 0.065 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : ~2MM STVA47 15N,13C; 50MM D3- REMARK 210 NAACETATE; 5MM CALCIUM CLORIDE; REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS, DMX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN, BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1, NMRPIPE SGI6X, REMARK 210 SPARKY 3 REMARK 210 METHOD USED : SIMULATED ANNEALING WITH REMARK 210 TORSION ANGLE DYNAMICS (DYANA) REMARK 210 FOLLOWED BY MOLECULAR DYNAMICS REMARK 210 (AMBER) REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 12 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 3D REMARK 210 HETERONUCLEAR TECHNIQUES
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 ILE A 5 REMARK 465 SER A 6 REMARK 465 GLU A 7 REMARK 465 PHE A 8 REMARK 465 GLY A 9
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 CYS A 50 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 2 CYS A 50 CA - CB - SG ANGL. DEV. = 7.6 DEGREES REMARK 500 3 CYS A 50 CA - CB - SG ANGL. DEV. = 7.6 DEGREES REMARK 500 4 CYS A 50 CA - CB - SG ANGL. DEV. = 7.4 DEGREES REMARK 500 5 CYS A 50 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 6 CYS A 50 CA - CB - SG ANGL. DEV. = 7.6 DEGREES REMARK 500 7 CYS A 50 CA - CB - SG ANGL. DEV. = 7.4 DEGREES REMARK 500 8 CYS A 50 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 9 CYS A 50 CA - CB - SG ANGL. DEV. = 7.6 DEGREES REMARK 500 10 CYS A 50 CA - CB - SG ANGL. DEV. = 7.9 DEGREES REMARK 500 11 CYS A 50 CA - CB - SG ANGL. DEV. = 7.6 DEGREES REMARK 500 12 CYS A 50 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 13 CYS A 50 CA - CB - SG ANGL. DEV. = 7.8 DEGREES REMARK 500 14 CYS A 50 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 15 CYS A 50 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 16 CYS A 50 CA - CB - SG ANGL. DEV. = 7.9 DEGREES REMARK 500 17 CYS A 50 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 18 CYS A 50 CA - CB - SG ANGL. DEV. = 7.9 DEGREES REMARK 500 18 GLY A 51 CA - C - O ANGL. DEV. = 41.0 DEGREES REMARK 500 19 CYS A 50 CA - CB - SG ANGL. DEV. = 7.4 DEGREES REMARK 500 20 CYS A 50 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 11 -157.73 -147.13 REMARK 500 1 CYS A 18 -88.32 -85.65 REMARK 500 1 CYS A 28 179.20 -59.19 REMARK 500 1 TRP A 33 41.91 -92.76 REMARK 500 1 ASP A 40 -1.78 -144.16 REMARK 500 1 ASP A 42 -1.29 50.54 REMARK 500 1 CYS A 50 28.08 45.50 REMARK 500 2 CYS A 11 -155.84 -147.26 REMARK 500 2 CYS A 18 -90.18 -89.17 REMARK 500 2 CYS A 28 -178.32 -66.61 REMARK 500 2 TRP A 33 42.82 -92.97 REMARK 500 2 ASP A 40 4.36 -150.29 REMARK 500 2 ASP A 42 -2.77 50.49 REMARK 500 2 CYS A 50 25.31 46.47 REMARK 500 3 CYS A 11 -157.07 -149.68 REMARK 500 3 CYS A 18 -90.92 -91.46 REMARK 500 3 CYS A 28 -178.33 -69.31 REMARK 500 3 TRP A 33 43.06 -92.60 REMARK 500 3 ASP A 40 5.61 -150.28 REMARK 500 3 ASP A 42 -2.95 50.31 REMARK 500 4 CYS A 18 -92.56 -90.20 REMARK 500 4 ALA A 24 71.26 -113.87 REMARK 500 4 CYS A 28 -179.28 -69.79 REMARK 500 4 TRP A 33 43.82 -93.42 REMARK 500 4 ASP A 40 4.73 -150.52 REMARK 500 4 ASP A 42 -3.24 49.78 REMARK 500 4 CYS A 50 29.37 44.34 REMARK 500 5 CYS A 18 -89.46 -91.70 REMARK 500 5 TRP A 33 43.20 -92.65 REMARK 500 5 ASP A 42 -2.03 50.53 REMARK 500 5 CYS A 50 28.56 45.17 REMARK 500 6 CYS A 18 -90.38 -89.72 REMARK 500 6 TRP A 33 43.06 -93.04 REMARK 500 6 ASP A 42 -3.03 50.49 REMARK 500 6 CYS A 50 29.92 45.09 REMARK 500 7 CYS A 18 -89.63 -91.93 REMARK 500 7 CYS A 28 -180.00 -66.00 REMARK 500 7 TRP A 33 43.24 -92.54 REMARK 500 7 ASP A 40 3.92 -150.23 REMARK 500 7 ASP A 42 -1.63 50.18 REMARK 500 8 CYS A 18 -90.09 -87.20 REMARK 500 8 TRP A 33 43.40 -92.14 REMARK 500 8 ASP A 40 4.59 -150.28 REMARK 500 8 ASP A 42 -2.88 50.74 REMARK 500 8 CYS A 50 21.26 46.68 REMARK 500 9 CYS A 11 -155.70 -140.24 REMARK 500 9 CYS A 18 -89.74 -86.21 REMARK 500 9 TRP A 33 42.46 -91.82 REMARK 500 9 ASP A 40 5.01 -150.54 REMARK 500 9 ASP A 42 -2.88 50.63 REMARK 500 9 CYS A 50 27.32 45.23 REMARK 500 10 CYS A 18 -90.43 -89.61 REMARK 500 10 CYS A 28 -177.08 -66.71 REMARK 500 10 TRP A 33 42.73 -92.65 REMARK 500 10 ASP A 40 5.05 -150.36 REMARK 500 10 ASP A 42 -3.06 49.71 REMARK 500 10 CYS A 50 28.40 45.79 REMARK 500 11 CYS A 18 -92.03 -96.54 REMARK 500 11 TRP A 33 43.63 -93.14 REMARK 500 11 ASP A 42 -3.48 49.31 REMARK 500 11 CYS A 50 27.66 45.30 REMARK 500 12 CYS A 11 -143.38 -140.22 REMARK 500 12 CYS A 18 -87.81 -84.56 REMARK 500 12 TRP A 33 42.81 -91.61 REMARK 500 12 ASP A 40 4.44 -150.66 REMARK 500 12 ASP A 42 -1.24 50.96 REMARK 500 12 CYS A 50 27.26 44.91 REMARK 500 13 CYS A 11 -153.16 -147.98 REMARK 500 13 CYS A 18 -89.82 -87.46 REMARK 500 13 TRP A 33 42.89 -92.77 REMARK 500 13 ASP A 42 -3.03 49.99 REMARK 500 13 CYS A 50 26.66 45.85 REMARK 500 14 CYS A 18 -89.54 -90.28 REMARK 500 14 CYS A 28 -178.86 -68.16 REMARK 500 14 TRP A 33 43.51 -92.67 REMARK 500 14 ASP A 40 4.58 -150.94 REMARK 500 14 ASP A 42 -1.71 49.94 REMARK 500 15 CYS A 11 -137.01 -129.77 REMARK 500 15 CYS A 18 -90.04 -87.66 REMARK 500 15 CYS A 28 -178.46 -62.21 REMARK 500 15 TRP A 33 42.89 -92.17 REMARK 500 15 ASP A 42 -3.13 50.31 REMARK 500 15 CYS A 50 28.60 44.41 REMARK 500 16 CYS A 18 -92.04 -89.12 REMARK 500 16 TRP A 33 43.13 -92.30 REMARK 500 16 ASP A 40 5.08 -151.27 REMARK 500 16 ASP A 42 -2.88 49.64 REMARK 500 16 CYS A 50 21.11 47.51 REMARK 500 17 CYS A 18 -89.49 -84.99 REMARK 500 17 TRP A 33 42.75 -92.11 REMARK 500 17 ASP A 40 4.43 -150.31 REMARK 500 17 ASP A 42 -2.80 50.86 REMARK 500 18 CYS A 18 -89.71 -86.57 REMARK 500 18 TRP A 33 42.54 -91.93 REMARK 500 18 ASP A 40 4.98 -150.00 REMARK 500 18 ASP A 42 -2.93 50.66 REMARK 500 18 CYS A 50 26.53 46.56 REMARK 500 19 CYS A 11 -157.44 -152.06 REMARK 500 19 CYS A 18 -90.14 -90.89 REMARK 500 19 CYS A 28 -178.37 -62.63 REMARK 500 19 TRP A 33 42.63 -92.07 REMARK 500 19 ASP A 42 -2.90 50.34 REMARK 500 19 CYS A 50 28.06 44.75 REMARK 500 20 CYS A 18 -90.44 -87.91 REMARK 500 20 TRP A 33 42.80 -92.32 REMARK 500 20 ASP A 40 4.60 -150.18 REMARK 500 20 ASP A 42 -2.79 50.66 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5210 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFT FILE
DBREF 1K7B A 11 51 UNP P98162 RSVR_COTJA 30 70
SEQADV 1K7B ILE A 5 UNP P98162 CLONING ARTIFACT SEQADV 1K7B SER A 6 UNP P98162 CLONING ARTIFACT SEQADV 1K7B GLU A 7 UNP P98162 CLONING ARTIFACT SEQADV 1K7B PHE A 8 UNP P98162 CLONING ARTIFACT SEQADV 1K7B GLY A 9 UNP P98162 CLONING ARTIFACT SEQADV 1K7B SER A 10 UNP P98162 CLONING ARTIFACT
SEQRES 1 A 47 ILE SER GLU PHE GLY SER CYS PRO PRO GLY GLN PHE ARG SEQRES 2 A 47 CYS SER GLU PRO PRO GLY ALA HIS GLY GLU CYS TYR PRO SEQRES 3 A 47 GLN ASP TRP LEU CYS ASP GLY HIS PRO ASP CYS ASP ASP SEQRES 4 A 47 GLY ARG ASP GLU TRP GLY CYS GLY
HELIX 1 1 ASP A 32 LEU A 34 5 3 HELIX 2 2 GLU A 47 GLY A 51 5 5
SHEET 1 A 2 GLN A 15 PHE A 16 0 SHEET 2 A 2 TYR A 29 PRO A 30 -1 O TYR A 29 N PHE A 16
SSBOND 1 CYS A 11 CYS A 28 1555 1555 2.04 SSBOND 2 CYS A 18 CYS A 41 1555 1555 2.04 SSBOND 3 CYS A 35 CYS A 50 1555 1555 2.02
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000