10 20 30 40 50 60 70 80 1K6H - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA 16-OCT-01 1K6H
TITLE SOLUTION STRUCTURE OF CONSERVED AGNN TETRALOOPS: INSIGHTS TITLE 2 INTO RNT1P RNA PROCESSING
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'- COMPND 3 R(P*GP*GP*CP*GP*UP*GP*UP*UP*CP*AP*GP*AP*AP*GP*AP*AP*CP*GP*C COMPND 4 P*GP*CP*C)-3'); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: AGNN TETRALOOP, SUBSTRATE FOR RNT1P
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHETIC-T7 RNA TRANSCRIPT
KEYWDS RNA TETRALOOP
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR I.LEBARS,B.LAMONTAGNE,S.YOSHIZAWA,S.ABOU ELELA,D.FOURMY
REVDAT 3 24-FEB-09 1K6H 1 VERSN REVDAT 2 01-APR-03 1K6H 1 JRNL REVDAT 1 19-DEC-01 1K6H 0
JRNL AUTH I.LEBARS,B.LAMONTAGNE,S.YOSHIZAWA,S.ABOUL-ELELA, JRNL AUTH 2 D.FOURMY JRNL TITL SOLUTION STRUCTURE OF CONSERVED AGNN TETRALOOPS: JRNL TITL 2 INSIGHTS INTO RNT1P RNA PROCESSING. JRNL REF EMBO J. V. 20 7250 2001 JRNL REFN ISSN 0261-4189 JRNL PMID 11743001 JRNL DOI 10.1093/EMBOJ/20.24.7250
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVER REMARK 3 AUTHORS : MOLECULAR SIMULATIONS INC. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1K6H COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-01. REMARK 100 THE RCSB ID CODE IS RCSB014620.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293; 278; 293; 278 REMARK 210 PH : 6.4; 6.4; 6.4; 6.4 REMARK 210 IONIC STRENGTH : 10MM NA PHOSPHATE; 10MM NA REMARK 210 PHOSPHATE; 10MM NA PHOSPHATE; REMARK 210 10MM NA PHOSPHATE REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT; REMARK 210 AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM RNA, 10 MM NA PHOSPHATE, REMARK 210 PH 6.4; 1 MM RNA, 10 MM NA REMARK 210 PHOSPHATE, PH 6.4; 1 MM RNA, REMARK 210 15N, 13C, 10 MM NA PHOSPHATE, REMARK 210 PH 6.4; 1 MM RNA, 15N, 13C, 10 REMARK 210 MM NA PHOSPHATE, PH 6.4 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D DQF-COSY, 2D REMARK 210 TOCSY, 3D NOESY-HMQC, 3D HCCH- REMARK 210 TOCSY, HP COSY, HSQC, 3D HCP, REMARK 210 HNN COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR, AURELIA, DISCOVER REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 25 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 C A 3 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 U A 5 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 1 U A 8 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 1 C A 9 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 C A 19 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 C A 21 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 C A 3 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 2 U A 5 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 U A 8 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 2 C A 9 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 2 G A 11 O4' - C1' - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 C A 17 O4' - C1' - N1 ANGL. DEV. = 5.2 DEGREES REMARK 500 2 C A 19 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 2 C A 21 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 2 C A 22 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 3 C A 3 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 3 U A 7 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 A A 12 O4' - C1' - N9 ANGL. DEV. = 4.9 DEGREES REMARK 500 3 A A 13 O4' - C1' - N9 ANGL. DEV. = 5.5 DEGREES REMARK 500 3 C A 19 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 3 C A 21 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 4 C A 3 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 4 U A 7 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 4 U A 8 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 4 C A 9 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 4 G A 11 O4' - C1' - N9 ANGL. DEV. = 6.7 DEGREES REMARK 500 4 C A 17 O4' - C1' - N1 ANGL. DEV. = 5.8 DEGREES REMARK 500 4 C A 19 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 4 C A 21 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 5 C A 3 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 5 U A 5 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 5 U A 7 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 5 U A 8 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 5 C A 19 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 5 C A 21 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 6 C A 3 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 6 U A 5 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 6 G A 11 O4' - C1' - N9 ANGL. DEV. = 5.6 DEGREES REMARK 500 6 C A 17 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 6 C A 19 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 6 C A 21 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 7 C A 3 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES REMARK 500 7 C A 17 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 7 C A 19 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 7 C A 21 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 8 C A 3 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 8 U A 5 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 8 C A 9 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 8 G A 11 O4' - C1' - N9 ANGL. DEV. = 5.5 DEGREES REMARK 500 8 A A 12 C4' - C3' - C2' ANGL. DEV. = -6.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 142 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 G A 6 0.10 SIDE_CHAIN REMARK 500 1 U A 8 0.07 SIDE_CHAIN REMARK 500 1 A A 10 0.07 SIDE_CHAIN REMARK 500 1 G A 18 0.07 SIDE_CHAIN REMARK 500 1 G A 20 0.08 SIDE_CHAIN REMARK 500 2 G A 6 0.08 SIDE_CHAIN REMARK 500 2 G A 11 0.10 SIDE_CHAIN REMARK 500 2 G A 20 0.07 SIDE_CHAIN REMARK 500 3 A A 10 0.07 SIDE_CHAIN REMARK 500 4 G A 4 0.05 SIDE_CHAIN REMARK 500 4 G A 11 0.09 SIDE_CHAIN REMARK 500 4 A A 12 0.07 SIDE_CHAIN REMARK 500 4 A A 16 0.06 SIDE_CHAIN REMARK 500 4 G A 20 0.08 SIDE_CHAIN REMARK 500 4 C A 21 0.07 SIDE_CHAIN REMARK 500 5 G A 6 0.06 SIDE_CHAIN REMARK 500 5 G A 11 0.06 SIDE_CHAIN REMARK 500 5 G A 20 0.08 SIDE_CHAIN REMARK 500 6 G A 6 0.08 SIDE_CHAIN REMARK 500 6 G A 11 0.07 SIDE_CHAIN REMARK 500 6 G A 18 0.07 SIDE_CHAIN REMARK 500 7 G A 4 0.07 SIDE_CHAIN REMARK 500 7 G A 6 0.07 SIDE_CHAIN REMARK 500 7 G A 11 0.06 SIDE_CHAIN REMARK 500 7 G A 18 0.08 SIDE_CHAIN REMARK 500 8 G A 6 0.09 SIDE_CHAIN REMARK 500 8 G A 11 0.09 SIDE_CHAIN REMARK 500 8 A A 13 0.07 SIDE_CHAIN REMARK 500 8 G A 14 0.09 SIDE_CHAIN REMARK 500 8 G A 18 0.07 SIDE_CHAIN REMARK 500 9 G A 11 0.07 SIDE_CHAIN REMARK 500 9 G A 14 0.06 SIDE_CHAIN REMARK 500 10 G A 4 0.06 SIDE_CHAIN REMARK 500 10 G A 11 0.07 SIDE_CHAIN REMARK 500 10 C A 21 0.06 SIDE_CHAIN REMARK 500 11 G A 6 0.09 SIDE_CHAIN REMARK 500 11 G A 20 0.07 SIDE_CHAIN REMARK 500 12 G A 6 0.07 SIDE_CHAIN REMARK 500 12 G A 11 0.07 SIDE_CHAIN REMARK 500 12 G A 20 0.07 SIDE_CHAIN REMARK 500 13 G A 6 0.08 SIDE_CHAIN REMARK 500 13 G A 11 0.07 SIDE_CHAIN REMARK 500 13 A A 16 0.05 SIDE_CHAIN REMARK 500 13 G A 20 0.09 SIDE_CHAIN REMARK 500 14 G A 6 0.09 SIDE_CHAIN REMARK 500 14 G A 11 0.08 SIDE_CHAIN REMARK 500 14 G A 18 0.06 SIDE_CHAIN REMARK 500 14 C A 21 0.07 SIDE_CHAIN REMARK 500 15 G A 6 0.07 SIDE_CHAIN REMARK 500 15 A A 12 0.07 SIDE_CHAIN REMARK 500 15 G A 20 0.07 SIDE_CHAIN REMARK 500 15 C A 21 0.06 SIDE_CHAIN REMARK 500 16 G A 4 0.06 SIDE_CHAIN REMARK 500 16 G A 6 0.06 SIDE_CHAIN REMARK 500 16 G A 11 0.11 SIDE_CHAIN REMARK 500 16 G A 14 0.07 SIDE_CHAIN REMARK 500 16 G A 18 0.06 SIDE_CHAIN REMARK 500 17 A A 10 0.05 SIDE_CHAIN REMARK 500 17 A A 16 0.08 SIDE_CHAIN REMARK 500 17 C A 21 0.06 SIDE_CHAIN REMARK 500 18 A A 10 0.06 SIDE_CHAIN REMARK 500 18 G A 11 0.06 SIDE_CHAIN REMARK 500 18 G A 14 0.07 SIDE_CHAIN REMARK 500 18 A A 15 0.06 SIDE_CHAIN REMARK 500 18 G A 20 0.06 SIDE_CHAIN REMARK 500 18 C A 21 0.06 SIDE_CHAIN REMARK 500 19 A A 10 0.05 SIDE_CHAIN REMARK 500 19 G A 11 0.07 SIDE_CHAIN REMARK 500 19 A A 12 0.06 SIDE_CHAIN REMARK 500 19 G A 18 0.06 SIDE_CHAIN REMARK 500 19 G A 20 0.07 SIDE_CHAIN REMARK 500 20 G A 6 0.09 SIDE_CHAIN REMARK 500 20 G A 11 0.06 SIDE_CHAIN REMARK 500 20 G A 20 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1K6G RELATED DB: PDB REMARK 900 AGNN TETRALOOP
DBREF 1K6H A 1 22 PDB 1K6H 1K6H 1 22
SEQRES 1 A 22 G G C G U G U U C A G A A SEQRES 2 A 22 G A A C G C G C C
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000