1K5X - Header Asymmetric Unit

HEADER RIBOSOME 12-OCT-01 1K5X

TITLE STRUCTURE OF THE TRANSLATING 80S RIBOSOME FROM YEAST, TITLE 2 OBTAINED BY DOCKING ATOMIC MODELS FOR RNA AND PROTEIN TITLE 3 COMPONENTS INTO A 15A CRYO-EM MAP. THIS FILE 1K5X CONTAINS TITLE 4 THE 40S RIBOSOMAL SUBUNIT, THE P-SITE BOUND TRNA AND THE TITLE 5 MRNA CODON. THE FILE 1K5Y CONTAINS THE 60S RIBOSOMAL TITLE 6 SUBUNIT.

COMPND MOL_ID: 1; COMPND 2 MOLECULE: 18S RIBOSOMAL RNA; COMPND 3 CHAIN: A; COMPND 4 OTHER_DETAILS: MODELED AS ANALOGOUS MOLECULE OF COMPND 5 T.THERMOPHILUS TAKEN FROM PDB ENTRY 1FJF; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: P-SITE TRNA OF 80S RIBOSOME; COMPND 8 CHAIN: T; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: P-SITE CODON OF 80S RIBOSOME; COMPND 11 CHAIN: U; COMPND 12 MOL_ID: 4; COMPND 13 MOLECULE: 40S RIBOSOMAL PROTEIN S0A; COMPND 14 CHAIN: B; COMPND 15 MOL_ID: 5; COMPND 16 MOLECULE: 40S RIBOSOMAL PROTEIN S3; COMPND 17 CHAIN: C; COMPND 18 MOL_ID: 6; COMPND 19 MOLECULE: 40S RIBOSOMAL PROTEIN S9; COMPND 20 CHAIN: D; COMPND 21 MOL_ID: 7; COMPND 22 MOLECULE: 40S RIBOSOMAL PROTEIN S2; COMPND 23 CHAIN: E; COMPND 24 MOL_ID: 8; COMPND 25 MOLECULE: 40S RIBOSOMAL PROTEIN S5; COMPND 26 CHAIN: G; COMPND 27 MOL_ID: 9; COMPND 28 MOLECULE: 40S RIBOSOMAL PROTEIN S22; COMPND 29 CHAIN: H; COMPND 30 MOL_ID: 10; COMPND 31 MOLECULE: 40S RIBOSOMAL PROTEIN S16; COMPND 32 CHAIN: I; COMPND 33 MOL_ID: 11; COMPND 34 MOLECULE: 40S RIBOSOMAL PROTEIN S20; COMPND 35 CHAIN: J; COMPND 36 MOL_ID: 12; COMPND 37 MOLECULE: 40S RIBOSOMAL PROTEIN S14; COMPND 38 CHAIN: K; COMPND 39 MOL_ID: 13; COMPND 40 MOLECULE: 40S RIBOSOMAL PROTEIN S23; COMPND 41 CHAIN: L; COMPND 42 MOL_ID: 14; COMPND 43 MOLECULE: 40S RIBOSOMAL PROTEIN S18; COMPND 44 CHAIN: M; COMPND 45 MOL_ID: 15; COMPND 46 MOLECULE: 40S RIBOSOMAL PROTEIN S29B; COMPND 47 CHAIN: N; COMPND 48 MOL_ID: 16; COMPND 49 MOLECULE: 40S RIBOSOMAL PROTEIN S13; COMPND 50 CHAIN: O; COMPND 51 MOL_ID: 17; COMPND 52 MOLECULE: 40S RIBOSOMAL PROTEIN S11; COMPND 53 CHAIN: Q; COMPND 54 MOL_ID: 18; COMPND 55 MOLECULE: 40S RIBOSOMAL PROTEIN S15; COMPND 56 CHAIN: S

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 6 ORGANISM_COMMON: YEAST; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 9 ORGANISM_COMMON: YEAST; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 12 ORGANISM_COMMON: YEAST; SOURCE 13 MOL_ID: 5; SOURCE 14 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 15 ORGANISM_COMMON: YEAST; SOURCE 16 MOL_ID: 6; SOURCE 17 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 18 ORGANISM_COMMON: YEAST; SOURCE 19 MOL_ID: 7; SOURCE 20 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 21 ORGANISM_COMMON: YEAST; SOURCE 22 MOL_ID: 8; SOURCE 23 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 24 ORGANISM_COMMON: YEAST; SOURCE 25 MOL_ID: 9; SOURCE 26 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 27 ORGANISM_COMMON: YEAST; SOURCE 28 MOL_ID: 10; SOURCE 29 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 30 ORGANISM_COMMON: YEAST; SOURCE 31 MOL_ID: 11; SOURCE 32 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 33 ORGANISM_COMMON: YEAST; SOURCE 34 MOL_ID: 12; SOURCE 35 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 36 ORGANISM_COMMON: YEAST; SOURCE 37 MOL_ID: 13; SOURCE 38 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 39 ORGANISM_COMMON: YEAST; SOURCE 40 MOL_ID: 14; SOURCE 41 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 42 ORGANISM_COMMON: YEAST; SOURCE 43 MOL_ID: 15; SOURCE 44 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 45 ORGANISM_COMMON: YEAST; SOURCE 46 MOL_ID: 16; SOURCE 47 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 48 ORGANISM_COMMON: YEAST; SOURCE 49 MOL_ID: 17; SOURCE 50 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 51 ORGANISM_COMMON: YEAST; SOURCE 52 MOL_ID: 18; SOURCE 53 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 54 ORGANISM_COMMON: YEAST

KEYWDS CRYO-EM, 40S SACHAROMYCES CEREVISIAE RIBOSOME, HOMOLOGY KEYWDS 2 MODELS

EXPDTA THEORETICAL MODEL

AUTHOR C.M.T.SPAHN,R.BECKMANN,N.ESWAR,P.PENCZEK,A.SALI,G.BLOBEL, AUTHOR 2 J.FRANK

REVDAT 3 01-APR-03 1K5X 1 JRNL REVDAT 2 22-MAY-02 1K5X 1 REMARK DBREF REVDAT 1 09-NOV-01 1K5X 0

JRNL AUTH C.M.SPAHN,R.BECKMANN,N.ESWAR,P.A.PENCZEK,A.SALI, JRNL AUTH 2 G.BLOBEL,J.FRANK JRNL TITL STRUCTURE OF THE 80S RIBOSOME FROM SACCHAROMYCES JRNL TITL 2 CEREVISIAE--TRNA-RIBOSOME AND SUBUNIT-SUBUNIT JRNL TITL 3 INTERACTIONS. JRNL REF CELL V. 107 373 2001 JRNL REFN ASTM CELLB5 US ISSN 0092-8674

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1K5X COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-NOV-2001. REMARK 100 THE RCSB ID CODE IS RCSB014600.

REMARK 105 REMARK 105 THE PROTEIN DATA BANK HAS ADOPTED THE SACCHARIDE CHEMISTS REMARK 105 NOMENCLATURE FOR ATOMS OF THE DEOXYRIBOSE/RIBOSE MOIETY REMARK 105 RATHER THAN THAT OF THE NUCLEOSIDE CHEMISTS. THE RING REMARK 105 OXYGEN ATOM IS LABELLED O4* INSTEAD OF O1*.

REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THIS STRUCTURE WAS GENERATED BY FITTING THE REMARK 220 APPROPRIATELY MODIFIED X-RAY CRYSTAL STRUCTURE OF THE T. REMARK 220 THERMOPHILUS 16S RRNA AND SEVERAL NEWLY CALCULATED REMARK 220 HOMOLOGY MODELS FOR YEAST RIBOSOMAL PROTEINS INTO A REMARK 220 15.4A RESOLUTION CRYO-EM MAP OF THE TRANSLATING 80S REMARK 220 RIBOSOME FROM SACHAROMYCES CEREVISIAE.

REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 P C A 1048 CA ILE C 157 1.25 REMARK 500 P A A 348 CA ILE L 77 1.33 REMARK 500 P A A 1269 CA TRP M 84 1.56 REMARK 500 P A A 505 CA TYR D 19 1.57 REMARK 500 CA GLY M 142 CA ARG S 81 1.61 REMARK 500 P G A 460 CA SER L 145 1.64 REMARK 500 P U A 1242 CA ASN M 44 1.64 REMARK 500 CA ASN J 72 CA LEU N 29 1.67 REMARK 500 P A A 579 CA SER D 145 1.73 REMARK 500 P A A 1021 CA PHE E 97 1.82 REMARK 500 P C A 578 CA ILE D 143 1.87 REMARK 500 C3* G T 72 O2P C T 73 1.89 REMARK 500 O2* G T 72 C6 C T 73 1.90 REMARK 500 P A A 1259 CA GLN M 136 1.95 REMARK 500 CA THR M 138 CA ASN S 82 1.96 REMARK 500 CA THR E 155 CA GLN H 97 2.02 REMARK 500 CA LEU M 131 CA TYR S 115 2.06 REMARK 500 CA THR M 140 CA MET S 80 2.08 REMARK 500 P G A 223 P C A 225 2.09 REMARK 500 CA THR M 138 CA MET S 83 2.17

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1K5Y RELATED DB: PDB REMARK 900 STRUCTURE OF THE 80S RIBOSOME FROM SACHAROMYCES CEREVISIAE REMARK 900 -- TRNA-RIBOSOME AND SUBUNIT-SUBUNIT INTERACTIONS. THE 60S REMARK 900 RIBOSOMAL SUBUNIT. REMARK 900 RELATED ID: 1MMS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RIBOSOMAL PROTEIN L11-RNA COMPLEX REMARK 900 RELATED ID: 1FFK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM REMARK 900 HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 1FJF RELATED DB: PDB REMARK 900 STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT REMARK 900 RELATED ID: 1FKA RELATED DB: PDB REMARK 900 STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT REMARK 900 AT 3.3 A RESOLUTION REMARK 900 RELATED ID: 1GIX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RIBOSOME AT 5.5 A RESOLUTION. REMARK 900 RELATED ID: 1GIY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RIBOSOME AT 5.5 A RESOLUTION.

DBREF 1K5X B 13 197 UNP P32905 RS0A_YEAST 13 197 DBREF 1K5X C 5 192 UNP P05750 RS3_YEAST 5 192 DBREF 1K5X D 19 196 UNP O13516 RS9A_YEAST 18 195 DBREF 1K5X E 74 222 UNP P25443 RS2_YEAST 74 222 DBREF 1K5X G 75 224 UNP P26783 RSF_YEAST 75 224 DBREF 1K5X H 3 129 UNP P04648 RS22_YEAST 3 129 DBREF 1K5X I 4 142 UNP P40213 RS16_YEAST 4 142 DBREF 1K5X J 21 117 UNP P38701 RS20_YEAST 21 117 DBREF 1K5X K 8 132 UNP P06367 R141_YEAST 8 132 DBREF 1K5X L 28 145 UNP P32827 RS23_YEAST 28 145 DBREF 1K5X M 15 145 UNP P35271 RS18_YEAST 14 144 DBREF 1K5X N 20 48 UNP P41058 R29B_YEAST 20 48 DBREF 1K5X O 65 129 UNP P05756 RS13_YEAST 65 129 DBREF 1K5X Q 68 143 UNP P26781 RS11_YEAST 68 143 DBREF 1K5X S 47 126 UNP Q01855 RS15_YEAST 47 126

SEQRES 1 A 1465 G G A G A G U U U G A U C SEQRES 2 A 1465 C U G G C U C A G G G U G SEQRES 3 A 1465 A A C G C U G G C G G C G SEQRES 4 A 1465 U G C C U A A G A C A U G SEQRES 5 A 1465 C A A G U C G U G C G G G SEQRES 6 A 1465 C C G C G C C G U G G U C SEQRES 7 A 1465 A G C G G C G G A C G G G SEQRES 8 A 1465 U G A G U A A C G C G U G SEQRES 9 A 1465 G G U G A C C U A C C C G SEQRES 10 A 1465 G A A G A G G G G G A C A SEQRES 11 A 1465 A C C C G G G G A A A C U SEQRES 12 A 1465 C G G G C U A A U C C C C SEQRES 13 A 1465 C A U G U G G A C C C G C SEQRES 14 A 1465 C C C U U G G G G U G U G SEQRES 15 A 1465 U C C A A A G G G C U U U SEQRES 16 A 1465 G C C C G C U U C C G G A SEQRES 17 A 1465 U G G G C C C G C G U C C SEQRES 18 A 1465 C A U C A G C U A G U U G SEQRES 19 A 1465 G U G G G G U A A U G G C SEQRES 20 A 1465 C C A C C A A G G C G A C SEQRES 21 A 1465 G A C G G G U A G C C G G SEQRES 22 A 1465 U C U G A G A G G A U G G SEQRES 23 A 1465 C C G G C C A C A G G G G SEQRES 24 A 1465 C A C U G A G A C A C G G SEQRES 25 A 1465 G C C C C A C U C C U A C SEQRES 26 A 1465 G G G A G G C A G C A G U SEQRES 27 A 1465 U A G G A A U C U U C C G SEQRES 28 A 1465 C A A U G G G C G C A A G SEQRES 29 A 1465 C C U G A C G G A G C G A SEQRES 30 A 1465 C G C C G C U U G G A G G SEQRES 31 A 1465 A A G A A G C C C U U C G SEQRES 32 A 1465 G G G U G U A A A C U C C SEQRES 33 A 1465 U G A A C G A A A C C C C SEQRES 34 A 1465 C G A C G A G G G G A C U SEQRES 35 A 1465 G A C G G U A A U A G C G SEQRES 36 A 1465 C C G G C C A A C U C C G SEQRES 37 A 1465 U G C C A G C A G C C G C SEQRES 38 A 1465 G G U A A U A C G G A G G SEQRES 39 A 1465 G C G C G A G C G U U A C SEQRES 40 A 1465 C C G G A U U C A C U G G SEQRES 41 A 1465 G C G U A A A G G G C G U SEQRES 42 A 1465 G U A G G C G G C C U G G SEQRES 43 A 1465 G G C G U C C C A U G U G SEQRES 44 A 1465 A A A G A C C A C G G C U SEQRES 45 A 1465 C A A C C G U G G G G G A SEQRES 46 A 1465 G C G U G G G A U A C G C SEQRES 47 A 1465 U C A G G C U A G A C G G SEQRES 48 A 1465 U G G G A G A G G G U G G SEQRES 49 A 1465 U G G A A U U C C C G G A SEQRES 50 A 1465 G U A G C G G U G A A A U SEQRES 51 A 1465 G C G C A G A U A C C G G SEQRES 52 A 1465 G A G G A A C G C C G A U SEQRES 53 A 1465 G G C G A A G G C A G C C SEQRES 54 A 1465 A C C U G G U C C A C C C SEQRES 55 A 1465 G U G A C G C U G A G G C SEQRES 56 A 1465 G C G A A A G C G U G G G SEQRES 57 A 1465 G A G C A A A C C G G A U SEQRES 58 A 1465 U A G A U A C C C G G G U SEQRES 59 A 1465 A G U C C A C G C C C U A SEQRES 60 A 1465 A A C G A U G C G C G C U SEQRES 61 A 1465 A G G U C U C U G G G U C SEQRES 62 A 1465 U C C U G G G G G C C G A SEQRES 63 A 1465 A G C U A A C G C G U U A SEQRES 64 A 1465 A G C G C G C C G C C U G SEQRES 65 A 1465 G G G A G U A C G G C C G SEQRES 66 A 1465 C A A G G C U G A A A C U SEQRES 67 A 1465 C A A A G G A A U U G A C SEQRES 68 A 1465 G G G G G C C C G C A C A SEQRES 69 A 1465 A G C G G U G G A G C A U SEQRES 70 A 1465 G U G G U U U A A U U C G SEQRES 71 A 1465 A A G C A A C G C G A A G SEQRES 72 A 1465 A A C C U U A C C A G G C SEQRES 73 A 1465 C U U G A C A U G C U A G SEQRES 74 A 1465 G G A A C C C G G G U G A SEQRES 75 A 1465 A A G C C U G G G G C C C SEQRES 76 A 1465 U A G C A C A G G U G C U SEQRES 77 A 1465 G C A U G G C C G U C G U SEQRES 78 A 1465 C A G C U C G U G C C G U SEQRES 79 A 1465 G A G G U G U U G G G U U SEQRES 80 A 1465 A A G U C C C G C A A C G SEQRES 81 A 1465 A G C G C A A C C C C C G SEQRES 82 A 1465 C C G U U A G U U G C C A SEQRES 83 A 1465 G C G G U U C G G C C G G SEQRES 84 A 1465 G C A C U C U A A C G G G SEQRES 85 A 1465 A C U G C C C G C G A A A SEQRES 86 A 1465 G C G G G A G G A A G G A SEQRES 87 A 1465 G G G G A C G A C G U C U SEQRES 88 A 1465 G G U C A G C A U G G C C SEQRES 89 A 1465 C U U A C G G C C U G G G SEQRES 90 A 1465 C G A C A C A C G U G C U SEQRES 91 A 1465 A C A A U G C C C A C U A SEQRES 92 A 1465 C A A A G C G A U G C C A SEQRES 93 A 1465 C C C G G C A A C G G G G SEQRES 94 A 1465 A G C U A A U C G C A A A SEQRES 95 A 1465 A A G G U G G G C C C A G SEQRES 96 A 1465 U U C G G A U U G G G G U SEQRES 97 A 1465 C U G C A A C C C G A C C SEQRES 98 A 1465 C C A U G A A G C C G G A SEQRES 99 A 1465 A U C G C U A G U A A U C SEQRES 10 A 1465 G C G G A U C A G C C A U SEQRES 10 A 1465 G C C G C G G U G A A U A SEQRES 10 A 1465 C G U U C C C G G G C C U SEQRES 10 A 1465 U G U A C A C A C C G C C SEQRES 10 A 1465 C G U C A C G C C A U G G SEQRES 10 A 1465 G A G C G G G C U C U A C SEQRES 10 A 1465 C C G A A G U C G C C G G SEQRES 10 A 1465 G A G C C U A C G G G C A SEQRES 10 A 1465 G G C G C C G A G G G U A SEQRES 10 A 1465 G G G C C C G U G A C U G SEQRES 11 A 1465 G G G C G A A G U C G U A SEQRES 11 A 1465 A C A A G G U A G C U G U SEQRES 11 A 1465 A C C G G A A G G U G C G SEQRES 11 A 1465 G C U G G A U C A SEQRES 1 T 74 U C C G U G A U A G U U PSU SEQRES 2 T 74 A A H2U G G H2U C A G A A U M2G SEQRES 3 T 74 C C A G A OMC U G A A YYG A U SEQRES 4 T 74 5MC U G G A G A U 5MC G G G G SEQRES 5 T 74 5MU PSU C A A U U C C C C G U SEQRES 6 T 74 C G C G G A G C C SEQRES 1 U 3 U U U SEQRES 1 B 185 ALA GLN LEU LEU LEU ALA ALA ASN THR HIS LEU GLY ALA SEQRES 2 B 185 ARG ASN VAL GLN VAL HIS GLN GLU PRO TYR VAL PHE ASN SEQRES 3 B 185 ALA ARG PRO ASP GLY VAL HIS VAL ILE ASN VAL GLY LYS SEQRES 4 B 185 THR TRP GLU LYS LEU VAL LEU ALA ALA ARG ILE ILE ALA SEQRES 5 B 185 ALA ILE PRO ASN PRO GLU ASP VAL VAL ALA ILE SER SER SEQRES 6 B 185 ARG THR PHE GLY GLN ARG ALA VAL LEU LYS PHE ALA ALA SEQRES 7 B 185 HIS THR GLY ALA THR PRO ILE ALA GLY ARG PHE THR PRO SEQRES 8 B 185 GLY SER PHE THR ASN TYR ILE THR ARG SER PHE LYS GLU SEQRES 9 B 185 PRO ARG LEU VAL ILE VAL THR ASP PRO ARG SER ASP ALA SEQRES 10 B 185 GLN ALA ILE LYS GLU ALA SER TYR VAL ASN ILE PRO VAL SEQRES 11 B 185 ILE ALA LEU THR ASP LEU ASP SER PRO SER GLU PHE VAL SEQRES 12 B 185 ASP VAL ALA ILE PRO CYS ASN ASN ARG GLY LYS HIS SER SEQRES 13 B 185 ILE GLY LEU ILE TRP TYR LEU LEU ALA ARG GLU VAL LEU SEQRES 14 B 185 ARG LEU ARG GLY ALA LEU VAL ASP ARG THR GLN PRO TRP SEQRES 15 B 185 SER ILE MET SEQRES 1 C 188 SER LYS LYS ARG LYS LEU VAL ALA ASP GLY VAL PHE TYR SEQRES 2 C 188 ALA GLU LEU ASN GLU PHE PHE THR ARG GLU LEU ALA GLU SEQRES 3 C 188 GLU GLY TYR SER GLY VAL GLU VAL ARG VAL THR PRO THR SEQRES 4 C 188 LYS THR GLU VAL ILE ILE ARG ALA THR ARG THR GLN ASP SEQRES 5 C 188 VAL LEU GLY GLU ASN GLY ARG ARG ILE ASN GLU LEU THR SEQRES 6 C 188 LEU LEU VAL GLN LYS ARG PHE LYS TYR ALA PRO GLY THR SEQRES 7 C 188 ILE VAL LEU TYR ALA GLU ARG VAL GLN ASP ARG GLY LEU SEQRES 8 C 188 SER ALA VAL ALA GLN ALA GLU SER MET LYS PHE LYS LEU SEQRES 9 C 188 LEU ASN GLY LEU ALA ILE ARG ARG ALA ALA TYR GLY VAL SEQRES 10 C 188 VAL ARG TYR VAL MET GLU SER GLY ALA LYS GLY CYS GLU SEQRES 11 C 188 VAL VAL VAL SER GLY LYS LEU ARG ALA ALA ARG ALA LYS SEQRES 12 C 188 ALA MET LYS PHE ALA ASP GLY PHE LEU ILE HIS SER GLY SEQRES 13 C 188 GLN PRO VAL ASN ASP PHE ILE ASP THR ALA THR ARG HIS SEQRES 14 C 188 VAL LEU MET ARG GLN GLY VAL LEU GLY ILE LYS VAL LYS SEQRES 15 C 188 ILE MET ARG ASP PRO ALA SEQRES 1 D 178 TYR GLU SER SER ARG LEU ASP ALA GLU LEU LYS LEU ALA SEQRES 2 D 178 GLY GLU PHE GLY LEU LYS ASN LYS LYS GLU ILE TYR ARG SEQRES 3 D 178 ILE SER PHE GLN LEU SER LYS ILE ARG ARG ALA ALA ARG SEQRES 4 D 178 ASP LEU LEU THR ARG ASP GLU LYS ASP PRO LYS ARG LEU SEQRES 5 D 178 PHE GLU GLY ASN ALA LEU ILE ARG ARG LEU VAL ARG VAL SEQRES 6 D 178 GLY VAL LEU SER GLU ASP LYS LYS LYS LEU ASP TYR VAL SEQRES 7 D 178 LEU ALA LEU LYS VAL GLU ASP PHE LEU GLU ARG ARG LEU SEQRES 8 D 178 GLN THR GLN VAL TYR LYS LEU GLY LEU ALA LYS SER VAL SEQRES 9 D 178 HIS HIS ALA ARG VAL LEU ILE THR GLN ARG HIS ILE ALA SEQRES 10 D 178 VAL GLY LYS GLN ILE VAL ASN ILE PRO SER PHE MET VAL SEQRES 11 D 178 ARG LEU ASP SER GLU LYS HIS ILE ASP PHE ALA PRO THR SEQRES 12 D 178 SER PRO PHE GLY GLY ALA ARG PRO GLY ARG VAL ALA ARG SEQRES 13 D 178 ARG ASN ALA ALA ARG LYS ALA GLU ALA SER GLY GLU ALA SEQRES 14 D 178 ALA ASP GLU ALA ASP GLU ALA ASP GLU SEQRES 1 E 149 GLY LEU GLN ASP GLU VAL MET ASN ILE LYS PRO VAL GLN SEQRES 2 E 149 LYS GLN THR ARG ALA GLY GLN ARG THR ARG PHE LYS ALA SEQRES 3 E 149 VAL VAL VAL VAL GLY ASP SER ASN GLY HIS VAL GLY LEU SEQRES 4 E 149 GLY ILE LYS THR ALA LYS GLU VAL ALA GLY ALA ILE ARG SEQRES 5 E 149 ALA GLY ILE ILE ILE ALA LYS LEU SER VAL ILE PRO ILE SEQRES 6 E 149 ARG ARG GLY TYR TRP GLY THR ASN LEU GLY GLN PRO HIS SEQRES 7 E 149 SER LEU ALA THR LYS THR THR GLY LYS CYS GLY SER VAL SEQRES 8 E 149 THR VAL ARG LEU ILE PRO ALA PRO ARG GLY SER GLY ILE SEQRES 9 E 149 VAL ALA SER PRO ALA VAL LYS LYS LEU LEU GLN LEU ALA SEQRES 10 E 149 GLY VAL GLU ASP VAL TYR THR GLN SER ASN GLY LYS THR SEQRES 11 E 149 ARG THR LEU GLU ASN THR LEU LYS ALA ALA PHE VAL ALA SEQRES 12 E 149 ILE GLY ASN THR TYR GLY SEQRES 1 G 150 ARG TYR ALA ASN LYS ARG PHE ARG LYS ALA GLN CYS PRO SEQRES 2 G 150 ILE ILE GLU ARG LEU THR ASN SER LEU MET MET ASN GLY SEQRES 3 G 150 ARG ASN ASN GLY LYS LYS LEU LYS ALA VAL ARG ILE ILE SEQRES 4 G 150 LYS HIS THR LEU ASP ILE ILE ASN VAL LEU THR ASP GLN SEQRES 5 G 150 ASN PRO ILE GLN VAL VAL VAL ASP ALA ILE THR ASN THR SEQRES 6 G 150 GLY PRO ARG GLU ASP THR THR ARG VAL GLY GLY GLY GLY SEQRES 7 G 150 ALA ALA ARG ARG GLN ALA VAL ASP VAL SER PRO LEU ARG SEQRES 8 G 150 ARG VAL ASN GLN ALA ILE ALA LEU LEU THR ILE GLY ALA SEQRES 9 G 150 ARG GLU ALA ALA PHE ARG ASN ILE LYS THR ILE ALA GLU SEQRES 10 G 150 THR LEU ALA GLU GLU LEU ILE ASN ALA ALA LYS GLY SER SEQRES 11 G 150 SER THR SER TYR ALA ILE LYS LYS LYS ASP GLU LEU GLU SEQRES 12 G 150 ARG VAL ALA LYS SER ASN ARG SEQRES 1 H 127 SER SER VAL LEU ALA ASP ALA LEU ASN ALA ILE ASN ASN SEQRES 2 H 127 ALA GLU LYS THR GLY LYS ARG GLN VAL LEU ILE ARG PRO SEQRES 3 H 127 SER SER LYS VAL ILE ILE LYS PHE LEU GLN VAL MET GLN SEQRES 4 H 127 LYS HIS GLY TYR ILE GLY GLU PHE GLU TYR ILE ASP ASP SEQRES 5 H 127 HIS ARG SER GLY LYS ILE VAL VAL GLN LEU ASN GLY ARG SEQRES 6 H 127 LEU ASN LYS CYS GLY VAL ILE SER PRO ARG PHE ASN VAL SEQRES 7 H 127 LYS ILE GLY ASP ILE GLU LYS TRP THR ALA ASN LEU LEU SEQRES 8 H 127 PRO ALA ARG GLN PHE GLY TYR VAL ILE LEU THR THR SER SEQRES 9 H 127 ALA GLY ILE MET ASP HIS GLU GLU ALA ARG ARG LYS HIS SEQRES 10 H 127 VAL SER GLY LYS ILE LEU GLY PHE VAL TYR SEQRES 1 I 139 PRO SER VAL GLN THR PHE GLY LYS LYS LYS SER ALA THR SEQRES 2 I 139 ALA VAL ALA HIS VAL LYS ALA GLY LYS GLY LEU ILE LYS SEQRES 3 I 139 VAL ASN GLY SER PRO ILE THR LEU VAL GLU PRO GLU ILE SEQRES 4 I 139 LEU ARG PHE LYS VAL TYR GLU PRO LEU LEU LEU VAL GLY SEQRES 5 I 139 LEU ASP LYS PHE SER ASN ILE ASP ILE ARG VAL ARG VAL SEQRES 6 I 139 THR GLY GLY GLY HIS VAL SER GLN VAL TYR ALA ILE ARG SEQRES 7 I 139 GLN ALA ILE ALA LYS GLY LEU VAL ALA TYR HIS GLN LYS SEQRES 8 I 139 TYR VAL ASP GLU GLN SER LYS ASN GLU LEU LYS LYS ALA SEQRES 9 I 139 PHE THR SER TYR ASP ARG THR LEU LEU ILE ALA ASP SER SEQRES 10 I 139 ARG ARG PRO GLU PRO LYS LYS PHE GLY GLY LYS GLY ALA SEQRES 11 I 139 ARG SER ARG PHE GLN LYS SER TYR ARG SEQRES 1 J 97 LYS ILE ARG ILE THR LEU THR SER THR LYS VAL LYS GLN SEQRES 2 J 97 LEU GLU ASN VAL SER SER ASN ILE VAL LYS ASN ALA GLU SEQRES 3 J 97 GLN HIS ASN LEU VAL LYS LYS GLY PRO VAL ARG LEU PRO SEQRES 4 J 97 THR LYS VAL LEU LYS ILE SER THR ARG LYS THR PRO ASN SEQRES 5 J 97 GLY GLU GLY SER LYS THR TRP GLU THR TYR GLU MET ARG SEQRES 6 J 97 ILE HIS LYS ARG TYR ILE ASP LEU GLU ALA PRO VAL GLN SEQRES 7 J 97 ILE VAL LYS ARG ILE THR GLN ILE THR ILE GLU PRO GLY SEQRES 8 J 97 VAL ASP VAL GLU VAL VAL SEQRES 1 K 125 ASP ASN SER GLN VAL PHE GLY VAL ALA ARG ILE TYR ALA SEQRES 2 K 125 SER PHE ASN ASP THR PHE VAL HIS VAL THR ASP LEU SER SEQRES 3 K 125 GLY LYS GLU THR ILE ALA ARG VAL THR GLY GLY MET LYS SEQRES 4 K 125 VAL LYS ALA ASP ARG ASP GLU SER SER PRO TYR ALA ALA SEQRES 5 K 125 MET LEU ALA ALA GLN ASP VAL ALA ALA LYS CYS ARG GLU SEQRES 6 K 125 VAL GLY ILE THR ALA VAL HIS VAL LYS ILE ARG ALA THR SEQRES 7 K 125 GLY GLY THR ARG THR LYS THR PRO GLY PRO GLY GLY GLN SEQRES 8 K 125 ALA ALA LEU ARG ALA LEU ALA ARG SER GLY LEU ARG ILE SEQRES 9 K 125 GLY ARG ILE GLU ASP VAL THR PRO VAL PRO SER ASP SER SEQRES 10 K 125 THR ARG LYS LYS GLY GLY ARG ARG SEQRES 1 L 118 ASN TYR LYS LYS ARG LEU LEU GLY THR ALA PHE LYS SER SEQRES 2 L 118 SER PRO PHE GLY GLY SER SER HIS ALA LYS GLY ILE VAL SEQRES 3 L 118 LEU GLU LYS LEU GLY ILE GLU SER LYS GLN PRO ASN SER SEQRES 4 L 118 ALA ILE ARG LYS CYS VAL ARG VAL GLN LEU ILE LYS ASN SEQRES 5 L 118 GLY LYS LYS VAL THR ALA PHE VAL PRO ASN ASP GLY CYS SEQRES 6 L 118 LEU ASN PHE VAL ASP GLU ASN ASP GLU VAL LEU LEU ALA SEQRES 7 L 118 GLY PHE GLY ARG LYS GLY LYS ALA LYS GLY ASP ILE PRO SEQRES 8 L 118 GLY VAL ARG PHE LYS VAL VAL LYS VAL SER GLY VAL SER SEQRES 9 L 118 LEU LEU ALA LEU TRP LYS GLU LYS LYS GLU LYS PRO ARG SEQRES 10 L 118 SER SEQRES 1 M 131 LEU ARG LEU LEU ASN THR ASN VAL ASP GLY ASN ILE LYS SEQRES 2 M 131 ILE VAL TYR ALA LEU THR THR ILE LYS GLY VAL GLY ARG SEQRES 3 M 131 ARG TYR SER ASN LEU VAL CYS LYS LYS ALA ASP VAL ASP SEQRES 4 M 131 LEU HIS LYS ARG ALA GLY GLU LEU THR GLN GLU GLU LEU SEQRES 5 M 131 GLU ARG ILE VAL GLN ILE MET GLN ASN PRO THR HIS TYR SEQRES 6 M 131 LYS ILE PRO ALA TRP PHE LEU ASN ARG GLN ASN ASP ILE SEQRES 7 M 131 THR ASP GLY LYS ASP TYR HIS THR LEU ALA ASN ASN VAL SEQRES 8 M 131 GLU SER LYS LEU ARG ASP ASP LEU GLU ARG LEU LYS LYS SEQRES 9 M 131 ILE ARG ALA HIS ARG GLY ILE ARG HIS PHE TRP GLY LEU SEQRES 10 M 131 ARG VAL ARG GLY GLN HIS THR LYS THR THR GLY ARG ARG SEQRES 11 M 131 ARG SEQRES 1 N 29 CYS ARG VAL CYS SER SER HIS THR GLY LEU VAL ARG LYS SEQRES 2 N 29 TYR ASP LEU ASN ILE CYS ARG GLN CYS PHE ARG GLU LYS SEQRES 3 N 29 ALA ASN ASP SEQRES 1 O 65 ILE THR GLY ASN LYS ILE MET ARG ILE LEU LYS SER ASN SEQRES 2 O 65 GLY LEU ALA PRO GLU ILE PRO GLU ASP LEU TYR TYR LEU SEQRES 3 O 65 ILE LYS LYS ALA VAL SER VAL ARG LYS HIS LEU GLU ARG SEQRES 4 O 65 ASN ARG LYS ASP LYS ASP ALA LYS PHE ARG LEU ILE LEU SEQRES 5 O 65 ILE GLU SER ARG ILE HIS ARG LEU ALA ARG TYR TYR ARG SEQRES 1 Q 76 LYS ILE LEU THR GLY THR VAL VAL SER THR LYS MET HIS SEQRES 2 Q 76 ARG THR ILE VAL ILE ARG ARG ALA TYR LEU HIS TYR ILE SEQRES 3 Q 76 PRO LYS TYR ASN ARG TYR GLU LYS ARG HIS LYS ASN VAL SEQRES 4 Q 76 PRO VAL HIS VAL SER PRO ALA PHE ARG VAL GLN VAL GLY SEQRES 5 Q 76 ASP ILE VAL THR VAL GLY GLN CYS ARG PRO ILE SER LYS SEQRES 6 Q 76 THR VAL ARG PHE ASN VAL VAL LYS VAL SER ALA SEQRES 1 S 80 ARG GLY MET THR SER LYS PRO ALA GLY PHE MET LYS LYS SEQRES 2 S 80 LEU ARG ALA ALA LYS LEU ALA ALA PRO GLU ASN GLU LYS SEQRES 3 S 80 PRO ALA PRO VAL ARG THR HIS MET ARG ASN MET ILE ILE SEQRES 4 S 80 VAL PRO GLU MET ILE GLY SER VAL VAL GLY ILE TYR ASN SEQRES 5 S 80 GLY LYS ALA PHE ASN GLN VAL GLU ILE ARG PRO GLU MET SEQRES 6 S 80 LEU GLY HIS TYR LEU GLY GLU PHE SER ILE THR TYR THR SEQRES 7 S 80 PRO VAL

MODRES 1K5X PSU T 13 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1K5X H2U T 16 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1K5X H2U T 19 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1K5X M2G T 26 G N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1K5X OMC T 32 C O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE MODRES 1K5X YYG T 37 G MODRES 1K5X 5MC T 40 C 5-METHYLCYTIDINE-5'-MONOPHOSPHATE MODRES 1K5X 5MC T 48 C 5-METHYLCYTIDINE-5'-MONOPHOSPHATE MODRES 1K5X 5MU T 53 U 5-METHYLURIDINE 5'-MONOPHOSPHATE MODRES 1K5X PSU T 54 U PSEUDOURIDINE-5'-MONOPHOSPHATE

HET PSU T 13 20 HET H2U T 16 20 HET H2U T 19 20 HET M2G T 26 25 HET OMC T 32 21 HET YYG T 37 39 HET 5MC T 40 21 HET 5MC T 48 21 HET 5MU T 53 21 HET PSU T 54 20

HETNAM PSU PSEUDOURIDINE-5'-MONOPHOSPHATE HETNAM H2U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE HETNAM M2G N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE HETNAM OMC O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE HETNAM YYG 4-(3-[5-O-PHOSPHONORIBOFURANOSYL]-4,6-DIMETHYL-8-OXO- HETNAM 2 YYG 4,8-DIHYDRO-3H-1,3,4,5,7A-PENTAAZA-S-INDACEN-YLAMINO- HETNAM 3 YYG BUTYRIC ACID METHYL ESTER HETNAM 5MC 5-METHYLCYTIDINE-5'-MONOPHOSPHATE HETNAM 5MU 5-METHYLURIDINE 5'-MONOPHOSPHATE

HETSYN YYG MODIFIED GUANOSINE-5'-PHOSPHATE

FORMUL 2 PSU 2(C9 H13 N2 O9 P) FORMUL 2 H2U 2(C9 H15 N2 O9 P) FORMUL 2 M2G C12 H18 N5 O8 P FORMUL 2 OMC C10 H16 N3 O8 P FORMUL 2 YYG C21 H29 N6 O12 P FORMUL 2 5MC 2(C10 H16 N3 O8 P) FORMUL 2 5MU C10 H15 N2 O9 P

LINK O3* U T 12 P PSU T 13 LINK O3* PSU T 13 P A T 14 LINK O3* A T 15 P H2U T 16 LINK O3* H2U T 16 P G T 17 LINK O3* G T 18 P H2U T 19 LINK O3* H2U T 19 P C T 20 LINK O3* M2G T 26 P C T 27 LINK O3* A T 31 P OMC T 32 LINK O3* OMC T 32 P U T 33 LINK O3* U T 39 P 5MC T 40 LINK O3* 5MC T 40 P U T 41 LINK O3* U T 47 P 5MC T 48 LINK O3* 5MC T 48 P G T 49 LINK O3* G T 52 P 5MU T 53 LINK O3* 5MU T 53 P PSU T 54 LINK O3* PSU T 54 P C T 55

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000