10 20 30 40 50 60 70 80 1K0C - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER GENE REGULATION 19-SEP-01 1K0C
TITLE URE2P IN COMPLEX WITH S-P-NITROBENZYLGLUTATHIONE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: URE2 PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS NITRATE ASSIMILATION, STRUCTURAL GENOMICS, GENE REGULATION
EXPDTA X-RAY DIFFRACTION
AUTHOR L.BOUSSET,H.BELRHALI,R.MELKI,S.MORERA
REVDAT 3 21-DEC-11 1K0C 1 HETATM HETNAM VERSN REVDAT 2 24-FEB-09 1K0C 1 VERSN REVDAT 1 21-DEC-01 1K0C 0
JRNL AUTH L.BOUSSET,H.BELRHALI,R.MELKI,S.MORERA JRNL TITL CRYSTAL STRUCTURES OF THE YEAST PRION URE2P FUNCTIONAL JRNL TITL 2 REGION IN COMPLEX WITH GLUTATHIONE AND RELATED COMPOUNDS. JRNL REF BIOCHEMISTRY V. 40 13564 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11695904 JRNL DOI 10.1021/BI011007B
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.BOUSSET,H.BELRHALI,J.JANIN,R.MELKI,S.MORERA REMARK 1 TITL STRUCTURE OF THE GLOBULAR REGION OF THE PRION PROTEIN URE2 REMARK 1 TITL 2 FROM THE YEAST SACCHAROMYCES CEREVISIAE REMARK 1 REF STRUCTURE V. 9 39 2001 REMARK 1 REFN ISSN 0969-2126 REMARK 1 DOI 10.1016/S0969-2126(00)00553-0
REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 37263 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1857 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7628 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 110 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.62500 REMARK 3 B22 (A**2) : -3.84500 REMARK 3 B33 (A**2) : -5.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.23 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.288 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.158 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.996 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.975 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : GTT_XPLOR.PARAM REMARK 3 PARAMETER FILE 5 : GTB_XPLOR.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1K0C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-SEP-01. REMARK 100 THE RCSB ID CODE IS RCSB014400.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-SEP-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38381 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, PH 8.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.36800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.09100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.60700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.09100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.36800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 61.60700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 95 REMARK 465 HIS A 96 REMARK 465 VAL A 97 REMARK 465 GLU A 98 REMARK 465 TYR A 99 REMARK 465 SER A 100 REMARK 465 ARG A 101 REMARK 465 GLU A 273 REMARK 465 LEU A 274 REMARK 465 ASP A 275 REMARK 465 THR A 276 REMARK 465 GLU A 277 REMARK 465 ASN A 278 REMARK 465 ALA A 279 REMARK 465 ALA A 280 REMARK 465 ALA A 281 REMARK 465 TYR A 282 REMARK 465 SER A 283 REMARK 465 ALA A 284 REMARK 465 GLY A 285 REMARK 465 THR A 286 REMARK 465 THR A 287 REMARK 465 PRO A 288 REMARK 465 MET A 289 REMARK 465 SER A 290 REMARK 465 GLN A 291 REMARK 465 SER A 292 REMARK 465 ARG A 293 REMARK 465 PHE A 294 REMARK 465 ARG A 352 REMARK 465 GLY A 353 REMARK 465 GLU A 354 REMARK 465 SER B 95 REMARK 465 HIS B 96 REMARK 465 VAL B 97 REMARK 465 GLU B 98 REMARK 465 TYR B 99 REMARK 465 GLU B 273 REMARK 465 LEU B 274 REMARK 465 ASP B 275 REMARK 465 THR B 276 REMARK 465 GLU B 277 REMARK 465 ASN B 278 REMARK 465 ALA B 279 REMARK 465 ALA B 280 REMARK 465 ALA B 281 REMARK 465 TYR B 282 REMARK 465 SER B 283 REMARK 465 ALA B 284 REMARK 465 GLY B 285 REMARK 465 THR B 286 REMARK 465 THR B 287 REMARK 465 PRO B 288 REMARK 465 MET B 289 REMARK 465 SER B 290 REMARK 465 GLN B 291 REMARK 465 SER B 292 REMARK 465 ARG B 293 REMARK 465 PHE B 294 REMARK 465 PHE B 295 REMARK 465 GLU B 354 REMARK 465 SER C 95 REMARK 465 HIS C 96 REMARK 465 VAL C 97 REMARK 465 GLU C 98 REMARK 465 TYR C 99 REMARK 465 ASP C 275 REMARK 465 THR C 276 REMARK 465 GLU C 277 REMARK 465 ASN C 278 REMARK 465 ALA C 279 REMARK 465 ALA C 280 REMARK 465 ALA C 281 REMARK 465 TYR C 282 REMARK 465 SER C 283 REMARK 465 ALA C 284 REMARK 465 GLY C 285 REMARK 465 THR C 286 REMARK 465 THR C 287 REMARK 465 PRO C 288 REMARK 465 MET C 289 REMARK 465 SER C 290 REMARK 465 SER D 95 REMARK 465 HIS D 96 REMARK 465 VAL D 97 REMARK 465 GLU D 98 REMARK 465 TYR D 99 REMARK 465 THR D 276 REMARK 465 GLU D 277 REMARK 465 ASN D 278 REMARK 465 ALA D 279 REMARK 465 ALA D 280 REMARK 465 ALA D 281 REMARK 465 TYR D 282 REMARK 465 SER D 283 REMARK 465 ALA D 284 REMARK 465 GLY D 285 REMARK 465 THR D 286 REMARK 465 THR D 287 REMARK 465 PRO D 288 REMARK 465 MET D 289 REMARK 465 SER D 290 REMARK 465 GLN D 291 REMARK 465 SER D 292 REMARK 465 ARG D 293 REMARK 465 GLU D 354
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 148 1.74 -63.13 REMARK 500 MET A 173 51.71 -102.05 REMARK 500 GLU A 180 112.45 77.69 REMARK 500 TRP A 202 -148.19 -135.61 REMARK 500 SER A 203 149.69 -172.74 REMARK 500 HIS A 223 -68.84 -103.40 REMARK 500 VAL A 271 57.42 -69.04 REMARK 500 SER B 118 -159.66 -147.55 REMARK 500 GLU B 180 116.97 82.16 REMARK 500 TRP B 202 -148.60 -137.46 REMARK 500 HIS B 223 -71.79 -88.38 REMARK 500 ARG C 101 -56.10 65.94 REMARK 500 MET C 173 52.28 -99.59 REMARK 500 GLU C 180 116.37 81.17 REMARK 500 TRP C 202 -149.08 -132.10 REMARK 500 HIS C 223 -68.64 -106.70 REMARK 500 PHE C 294 1.05 -69.66 REMARK 500 ASP C 304 36.24 39.63 REMARK 500 GLU D 108 78.87 -166.21 REMARK 500 ALA D 122 101.31 -43.03 REMARK 500 MET D 173 45.82 -88.01 REMARK 500 GLU D 180 117.72 72.42 REMARK 500 HIS D 223 -74.03 -101.86 REMARK 500 SER D 238 -6.68 -59.17 REMARK 500 GLU D 273 28.37 -71.35 REMARK 500 LEU D 274 36.22 -149.95 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 376 DISTANCE = 6.03 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTB A 355 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTB B 356 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTB C 357 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH D 358
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G6W RELATED DB: PDB REMARK 900 URE2P STRUCTURE REMARK 900 RELATED ID: 1JZR RELATED DB: PDB REMARK 900 URE2P IN COMPLEX WITH GLUTATHIONE REMARK 900 RELATED ID: 1K0A RELATED DB: PDB REMARK 900 URE2P IN COMPLEX WITH S-HEXYLGLUTATHIONE REMARK 900 RELATED ID: 1K0B RELATED DB: PDB REMARK 900 URE2P IN COMPLEX WITH GLUTATHIONE REMARK 900 RELATED ID: 1K0D RELATED DB: PDB REMARK 900 URE2P IN COMPLEX WITH GLUTATHIONE
DBREF 1K0C A 95 354 UNP P23202 URE2_YEAST 95 354 DBREF 1K0C B 95 354 UNP P23202 URE2_YEAST 95 354 DBREF 1K0C C 95 354 UNP P23202 URE2_YEAST 95 354 DBREF 1K0C D 95 354 UNP P23202 URE2_YEAST 95 354
SEQRES 1 A 260 SER HIS VAL GLU TYR SER ARG ILE THR LYS PHE PHE GLN SEQRES 2 A 260 GLU GLN PRO LEU GLU GLY TYR THR LEU PHE SER HIS ARG SEQRES 3 A 260 SER ALA PRO ASN GLY PHE LYS VAL ALA ILE VAL LEU SER SEQRES 4 A 260 GLU LEU GLY PHE HIS TYR ASN THR ILE PHE LEU ASP PHE SEQRES 5 A 260 ASN LEU GLY GLU HIS ARG ALA PRO GLU PHE VAL SER VAL SEQRES 6 A 260 ASN PRO ASN ALA ARG VAL PRO ALA LEU ILE ASP HIS GLY SEQRES 7 A 260 MET ASP ASN LEU SER ILE TRP GLU SER GLY ALA ILE LEU SEQRES 8 A 260 LEU HIS LEU VAL ASN LYS TYR TYR LYS GLU THR GLY ASN SEQRES 9 A 260 PRO LEU LEU TRP SER ASP ASP LEU ALA ASP GLN SER GLN SEQRES 10 A 260 ILE ASN ALA TRP LEU PHE PHE GLN THR SER GLY HIS ALA SEQRES 11 A 260 PRO MET ILE GLY GLN ALA LEU HIS PHE ARG TYR PHE HIS SEQRES 12 A 260 SER GLN LYS ILE ALA SER ALA VAL GLU ARG TYR THR ASP SEQRES 13 A 260 GLU VAL ARG ARG VAL TYR GLY VAL VAL GLU MET ALA LEU SEQRES 14 A 260 ALA GLU ARG ARG GLU ALA LEU VAL MET GLU LEU ASP THR SEQRES 15 A 260 GLU ASN ALA ALA ALA TYR SER ALA GLY THR THR PRO MET SEQRES 16 A 260 SER GLN SER ARG PHE PHE ASP TYR PRO VAL TRP LEU VAL SEQRES 17 A 260 GLY ASP LYS LEU THR ILE ALA ASP LEU ALA PHE VAL PRO SEQRES 18 A 260 TRP ASN ASN VAL VAL ASP ARG ILE GLY ILE ASN ILE LYS SEQRES 19 A 260 ILE GLU PHE PRO GLU VAL TYR LYS TRP THR LYS HIS MET SEQRES 20 A 260 MET ARG ARG PRO ALA VAL ILE LYS ALA LEU ARG GLY GLU SEQRES 1 B 260 SER HIS VAL GLU TYR SER ARG ILE THR LYS PHE PHE GLN SEQRES 2 B 260 GLU GLN PRO LEU GLU GLY TYR THR LEU PHE SER HIS ARG SEQRES 3 B 260 SER ALA PRO ASN GLY PHE LYS VAL ALA ILE VAL LEU SER SEQRES 4 B 260 GLU LEU GLY PHE HIS TYR ASN THR ILE PHE LEU ASP PHE SEQRES 5 B 260 ASN LEU GLY GLU HIS ARG ALA PRO GLU PHE VAL SER VAL SEQRES 6 B 260 ASN PRO ASN ALA ARG VAL PRO ALA LEU ILE ASP HIS GLY SEQRES 7 B 260 MET ASP ASN LEU SER ILE TRP GLU SER GLY ALA ILE LEU SEQRES 8 B 260 LEU HIS LEU VAL ASN LYS TYR TYR LYS GLU THR GLY ASN SEQRES 9 B 260 PRO LEU LEU TRP SER ASP ASP LEU ALA ASP GLN SER GLN SEQRES 10 B 260 ILE ASN ALA TRP LEU PHE PHE GLN THR SER GLY HIS ALA SEQRES 11 B 260 PRO MET ILE GLY GLN ALA LEU HIS PHE ARG TYR PHE HIS SEQRES 12 B 260 SER GLN LYS ILE ALA SER ALA VAL GLU ARG TYR THR ASP SEQRES 13 B 260 GLU VAL ARG ARG VAL TYR GLY VAL VAL GLU MET ALA LEU SEQRES 14 B 260 ALA GLU ARG ARG GLU ALA LEU VAL MET GLU LEU ASP THR SEQRES 15 B 260 GLU ASN ALA ALA ALA TYR SER ALA GLY THR THR PRO MET SEQRES 16 B 260 SER GLN SER ARG PHE PHE ASP TYR PRO VAL TRP LEU VAL SEQRES 17 B 260 GLY ASP LYS LEU THR ILE ALA ASP LEU ALA PHE VAL PRO SEQRES 18 B 260 TRP ASN ASN VAL VAL ASP ARG ILE GLY ILE ASN ILE LYS SEQRES 19 B 260 ILE GLU PHE PRO GLU VAL TYR LYS TRP THR LYS HIS MET SEQRES 20 B 260 MET ARG ARG PRO ALA VAL ILE LYS ALA LEU ARG GLY GLU SEQRES 1 C 260 SER HIS VAL GLU TYR SER ARG ILE THR LYS PHE PHE GLN SEQRES 2 C 260 GLU GLN PRO LEU GLU GLY TYR THR LEU PHE SER HIS ARG SEQRES 3 C 260 SER ALA PRO ASN GLY PHE LYS VAL ALA ILE VAL LEU SER SEQRES 4 C 260 GLU LEU GLY PHE HIS TYR ASN THR ILE PHE LEU ASP PHE SEQRES 5 C 260 ASN LEU GLY GLU HIS ARG ALA PRO GLU PHE VAL SER VAL SEQRES 6 C 260 ASN PRO ASN ALA ARG VAL PRO ALA LEU ILE ASP HIS GLY SEQRES 7 C 260 MET ASP ASN LEU SER ILE TRP GLU SER GLY ALA ILE LEU SEQRES 8 C 260 LEU HIS LEU VAL ASN LYS TYR TYR LYS GLU THR GLY ASN SEQRES 9 C 260 PRO LEU LEU TRP SER ASP ASP LEU ALA ASP GLN SER GLN SEQRES 10 C 260 ILE ASN ALA TRP LEU PHE PHE GLN THR SER GLY HIS ALA SEQRES 11 C 260 PRO MET ILE GLY GLN ALA LEU HIS PHE ARG TYR PHE HIS SEQRES 12 C 260 SER GLN LYS ILE ALA SER ALA VAL GLU ARG TYR THR ASP SEQRES 13 C 260 GLU VAL ARG ARG VAL TYR GLY VAL VAL GLU MET ALA LEU SEQRES 14 C 260 ALA GLU ARG ARG GLU ALA LEU VAL MET GLU LEU ASP THR SEQRES 15 C 260 GLU ASN ALA ALA ALA TYR SER ALA GLY THR THR PRO MET SEQRES 16 C 260 SER GLN SER ARG PHE PHE ASP TYR PRO VAL TRP LEU VAL SEQRES 17 C 260 GLY ASP LYS LEU THR ILE ALA ASP LEU ALA PHE VAL PRO SEQRES 18 C 260 TRP ASN ASN VAL VAL ASP ARG ILE GLY ILE ASN ILE LYS SEQRES 19 C 260 ILE GLU PHE PRO GLU VAL TYR LYS TRP THR LYS HIS MET SEQRES 20 C 260 MET ARG ARG PRO ALA VAL ILE LYS ALA LEU ARG GLY GLU SEQRES 1 D 260 SER HIS VAL GLU TYR SER ARG ILE THR LYS PHE PHE GLN SEQRES 2 D 260 GLU GLN PRO LEU GLU GLY TYR THR LEU PHE SER HIS ARG SEQRES 3 D 260 SER ALA PRO ASN GLY PHE LYS VAL ALA ILE VAL LEU SER SEQRES 4 D 260 GLU LEU GLY PHE HIS TYR ASN THR ILE PHE LEU ASP PHE SEQRES 5 D 260 ASN LEU GLY GLU HIS ARG ALA PRO GLU PHE VAL SER VAL SEQRES 6 D 260 ASN PRO ASN ALA ARG VAL PRO ALA LEU ILE ASP HIS GLY SEQRES 7 D 260 MET ASP ASN LEU SER ILE TRP GLU SER GLY ALA ILE LEU SEQRES 8 D 260 LEU HIS LEU VAL ASN LYS TYR TYR LYS GLU THR GLY ASN SEQRES 9 D 260 PRO LEU LEU TRP SER ASP ASP LEU ALA ASP GLN SER GLN SEQRES 10 D 260 ILE ASN ALA TRP LEU PHE PHE GLN THR SER GLY HIS ALA SEQRES 11 D 260 PRO MET ILE GLY GLN ALA LEU HIS PHE ARG TYR PHE HIS SEQRES 12 D 260 SER GLN LYS ILE ALA SER ALA VAL GLU ARG TYR THR ASP SEQRES 13 D 260 GLU VAL ARG ARG VAL TYR GLY VAL VAL GLU MET ALA LEU SEQRES 14 D 260 ALA GLU ARG ARG GLU ALA LEU VAL MET GLU LEU ASP THR SEQRES 15 D 260 GLU ASN ALA ALA ALA TYR SER ALA GLY THR THR PRO MET SEQRES 16 D 260 SER GLN SER ARG PHE PHE ASP TYR PRO VAL TRP LEU VAL SEQRES 17 D 260 GLY ASP LYS LEU THR ILE ALA ASP LEU ALA PHE VAL PRO SEQRES 18 D 260 TRP ASN ASN VAL VAL ASP ARG ILE GLY ILE ASN ILE LYS SEQRES 19 D 260 ILE GLU PHE PRO GLU VAL TYR LYS TRP THR LYS HIS MET SEQRES 20 D 260 MET ARG ARG PRO ALA VAL ILE LYS ALA LEU ARG GLY GLU
HET GTB A 355 30 HET GTB B 356 30 HET GTB C 357 30 HET GSH D 358 20
HETNAM GTB S-(P-NITROBENZYL)GLUTATHIONE HETNAM GSH GLUTATHIONE
FORMUL 5 GTB 3(C17 H22 N4 O8 S) FORMUL 8 GSH C10 H17 N3 O6 S FORMUL 9 HOH *161(H2 O)
HELIX 1 1 ILE A 102 GLU A 108 1 7 HELIX 2 2 ALA A 122 LEU A 135 1 14 HELIX 3 3 GLY A 149 ARG A 152 5 4 HELIX 4 4 ALA A 153 ASN A 160 1 8 HELIX 5 5 GLY A 172 ASP A 174 5 3 HELIX 6 6 GLU A 180 GLY A 197 1 18 HELIX 7 7 ASP A 205 HIS A 223 1 19 HELIX 8 8 HIS A 223 PHE A 236 1 14 HELIX 9 9 ILE A 241 VAL A 271 1 31 HELIX 10 10 THR A 307 ALA A 312 1 6 HELIX 11 11 PHE A 313 ASN A 318 1 6 HELIX 12 12 VAL A 319 GLY A 324 5 6 HELIX 13 13 ASN A 326 PHE A 331 1 6 HELIX 14 14 PHE A 331 ARG A 343 1 13 HELIX 15 15 ARG A 344 LEU A 351 1 8 HELIX 16 16 SER B 100 GLU B 108 1 9 HELIX 17 17 ALA B 122 LEU B 135 1 14 HELIX 18 18 GLY B 149 ARG B 152 5 4 HELIX 19 19 ALA B 153 ASN B 160 1 8 HELIX 20 20 GLY B 172 ASP B 174 5 3 HELIX 21 21 GLU B 180 GLY B 197 1 18 HELIX 22 22 ASP B 205 HIS B 223 1 19 HELIX 23 23 HIS B 223 PHE B 236 1 14 HELIX 24 24 ILE B 241 VAL B 271 1 31 HELIX 25 25 THR B 307 ALA B 312 1 6 HELIX 26 26 PHE B 313 ASN B 318 1 6 HELIX 27 27 VAL B 319 GLY B 324 5 6 HELIX 28 28 ASN B 326 PHE B 331 1 6 HELIX 29 29 PHE B 331 ARG B 343 1 13 HELIX 30 30 ARG B 344 GLY B 353 1 10 HELIX 31 31 ARG C 101 GLU C 108 1 8 HELIX 32 32 ALA C 122 LEU C 135 1 14 HELIX 33 33 ASP C 145 ARG C 152 5 8 HELIX 34 34 ALA C 153 SER C 158 1 6 HELIX 35 35 GLY C 172 ASP C 174 5 3 HELIX 36 36 GLU C 180 GLY C 197 1 18 HELIX 37 37 ASP C 205 HIS C 223 1 19 HELIX 38 38 HIS C 223 PHE C 236 1 14 HELIX 39 39 ILE C 241 GLU C 273 1 33 HELIX 40 40 ARG C 293 TYR C 297 5 5 HELIX 41 41 THR C 307 ALA C 312 1 6 HELIX 42 42 PHE C 313 ASN C 318 1 6 HELIX 43 43 VAL C 319 GLY C 324 5 6 HELIX 44 44 ASN C 326 PHE C 331 1 6 HELIX 45 45 PHE C 331 ARG C 343 1 13 HELIX 46 46 ARG C 344 ARG C 352 1 9 HELIX 47 47 SER D 100 GLN D 107 1 8 HELIX 48 48 ALA D 122 LEU D 135 1 14 HELIX 49 49 GLY D 149 ARG D 152 5 4 HELIX 50 50 ALA D 153 SER D 158 1 6 HELIX 51 51 GLY D 172 ASP D 174 5 3 HELIX 52 52 GLU D 180 GLY D 197 1 18 HELIX 53 53 ASP D 205 HIS D 223 1 19 HELIX 54 54 HIS D 223 PHE D 236 1 14 HELIX 55 55 ILE D 241 GLU D 273 1 33 HELIX 56 56 THR D 307 ALA D 312 1 6 HELIX 57 57 PHE D 313 ASN D 318 1 6 HELIX 58 58 VAL D 319 GLY D 324 5 6 HELIX 59 59 ASN D 326 PHE D 331 1 6 HELIX 60 60 PHE D 331 ARG D 344 1 14 HELIX 61 61 ARG D 344 LEU D 351 1 8
SHEET 1 A 4 TYR A 139 PHE A 143 0 SHEET 2 A 4 TYR A 114 SER A 118 1 N LEU A 116 O ASN A 140 SHEET 3 A 4 ALA A 167 ASP A 170 -1 O ALA A 167 N PHE A 117 SHEET 4 A 4 LEU A 176 TRP A 179 -1 O LEU A 176 N ASP A 170 SHEET 1 B 4 TYR B 139 PHE B 143 0 SHEET 2 B 4 TYR B 114 SER B 118 1 N LEU B 116 O ASN B 140 SHEET 3 B 4 ALA B 167 ASP B 170 -1 O ALA B 167 N PHE B 117 SHEET 4 B 4 LEU B 176 TRP B 179 -1 O ILE B 178 N LEU B 168 SHEET 1 C 4 TYR C 139 PHE C 143 0 SHEET 2 C 4 TYR C 114 SER C 118 1 N LEU C 116 O ASN C 140 SHEET 3 C 4 ALA C 167 ASP C 170 -1 O ALA C 167 N PHE C 117 SHEET 4 C 4 LEU C 176 TRP C 179 -1 O LEU C 176 N ASP C 170 SHEET 1 D 4 TYR D 139 PHE D 143 0 SHEET 2 D 4 TYR D 114 SER D 118 1 N LEU D 116 O ILE D 142 SHEET 3 D 4 ALA D 167 ASP D 170 -1 O ALA D 167 N PHE D 117 SHEET 4 D 4 LEU D 176 TRP D 179 -1 O LEU D 176 N ASP D 170
CISPEP 1 VAL A 165 PRO A 166 0 0.48 CISPEP 2 VAL B 165 PRO B 166 0 0.35 CISPEP 3 VAL C 165 PRO C 166 0 -0.08 CISPEP 4 VAL D 165 PRO D 166 0 0.32
SITE 1 AC1 16 SER A 121 PRO A 123 ASN A 124 PHE A 146 SITE 2 AC1 16 ARG A 164 VAL A 165 GLU A 180 SER A 181 SITE 3 AC1 16 LEU A 231 TRP A 316 VAL A 319 ARG A 322 SITE 4 AC1 16 HOH A 362 HOH A 372 HOH A 379 SER B 221 SITE 1 AC2 16 SER A 221 SER B 121 PRO B 123 ASN B 124 SITE 2 AC2 16 PHE B 146 ARG B 164 VAL B 165 PRO B 166 SITE 3 AC2 16 GLU B 180 SER B 181 LEU B 231 VAL B 319 SITE 4 AC2 16 ARG B 322 HOH B 358 HOH B 372 HOH B 378 SITE 1 AC3 19 SER C 121 ASN C 124 PHE C 146 HIS C 151 SITE 2 AC3 19 ARG C 164 VAL C 165 PRO C 166 GLU C 180 SITE 3 AC3 19 SER C 181 LEU C 231 TRP C 316 VAL C 319 SITE 4 AC3 19 ARG C 322 HOH C 366 HOH C 369 HOH C 375 SITE 5 AC3 19 HOH C 377 HOH C 398 SER D 221 SITE 1 AC4 9 SER C 221 ALA D 122 ASN D 124 ARG D 164 SITE 2 AC4 9 VAL D 165 PRO D 166 GLU D 180 SER D 181 SITE 3 AC4 9 HOH D 364
CRYST1 54.736 123.214 168.182 90.00 90.00 90.00 P 21 21 21 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.018270 0.000000 0.000000 0.00000
SCALE2 0.000000 0.008116 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005946 0.00000