1JZC - Header Asymmetric Unit

HEADER RNA 14-SEP-01 1JZC

TITLE THE SOLUTION STRUCTURE OF THE MUTANT 5'AUG3' TRILOOP IN THE TITLE 2 RNA PROMOTER REGION OF THE BROME MOSAIC VIRUS GENOMIC (+)- TITLE 3 RNA

COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-R(*GP*GP*UP*GP*CP*AP*UP*GP*GP*CP*AP*CP*C)-3'; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: MUTANT RNA TRILOOP 5'AUG3'OF THE RNA COMPND 6 PROMOTER REGION

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE IS A MUTANT TRILOOP OF WHICH SOURCE 4 THE WILD TYPE IS NATURALLY OCCURING IN BROME MOSAIC VIRUS SOURCE 5 GENOMIC RNA

KEYWDS RNA, BROME MOSAIC VIRUS, BMV, TRILOOP, NMR, REPLICATION, KEYWDS 2 PROMOTER, RNA POLYMERASE

EXPDTA SOLUTION NMR

MDLTYP MINIMIZED AVERAGE

AUTHOR C.-H.KIM,C.C.KAO

REVDAT 2 24-FEB-09 1JZC 1 VERSN REVDAT 1 07-OCT-03 1JZC 0

JRNL AUTH C.-H.KIM,C.C.KAO JRNL TITL A MUTANT VIRAL RNA PROMOTER WITH AN ALTERED JRNL TITL 2 CONFORMATION RETAINS EFFICIENT RECOGNITION BY A JRNL TITL 3 VIRAL RNA REPLICASE THROUGH A SOLUTION-EXPOSED JRNL TITL 4 ADENINE JRNL REF RNA V. 7 1476 2001 JRNL REFN ISSN 1355-8382 JRNL PMID 11680852

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.-H.KIM,C.C.KAO,I.TINOCO JR. REMARK 1 TITL RNA MOTIFS THAT DETERMINE SPECIFICITY BETWEEN A REMARK 1 TITL 2 VIRAL REPLICASE AND ITS PROMOTER REMARK 1 REF NAT.STRUCT.BIOL. V. 7 415 2000 REMARK 1 REFN ISSN 1072-8368 REMARK 1 DOI 10.1038/75202 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.-H.KIM,I.TINOCO JR. REMARK 1 TITL STRUCTURAL AND THERMODYNAMIC STUDIES ON MUTANT RNA REMARK 1 TITL 2 MOTIFS THAT IMPAIR THE SPECIFICITY BETWEEN A VIRAL REMARK 1 TITL 3 REPLICASE AND ITS PROMOTER REMARK 1 REF J.MOL.BIOL. V. 307 827 2001 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.2001.4497

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : AXEL BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1JZC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-01. REMARK 100 THE RCSB ID CODE IS RCSB014364.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293; 283 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 10 MM NACL; 10 MM NACL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM RNA TRILOOP 13MER, 10MM REMARK 210 NA PHOSPHATE, PH=6.5; 2 MM RNA REMARK 210 TRILOOP 13MER, 10MM NA REMARK 210 PHOSPHATE, PH=6.5 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX, AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.1, XWINNMR, UXNMR, REMARK 210 FELIX REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 17 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : A STRUCUTRE AVERAGED OVER REMARK 210 THESE 17 CALCULATED STRUCTURES. REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ESH RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF THE STEM-TRILOOP IN THE RNA REMARK 900 PROMOTER REGION OF THE BROME MOSAIC VIRUS GENOMIC (+)-RNA REMARK 900 RELATED ID: 1I46 RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF THE MUTANT STEM-TRILOOP IN THE REMARK 900 RNA PROMOTER REGION OF THE BROME MOSAIC VIRUS GENOMIC (+)- REMARK 900 RNA REMARK 900 RELATED ID: 1I4B RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF THE MUTANT STEM-TRILOOP IN THE REMARK 900 RNA PROMOTER REGION OF THE BROME MOSAIC VIRUS GENOMIC (+)- REMARK 900 RNA REMARK 900 RELATED ID: 1I4C RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF THE MUTANT STEM-TRILOOP IN THE REMARK 900 RNA PROMOTER REGION OF THE BROME MOSAIC VIRUS GENOMIC (+)- REMARK 900 RNA

DBREF 1JZC A 1 13 PDB 1JZC 1JZC 1 13

SEQRES 1 A 13 G G U G C A U G G C A C C

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000