10 20 30 40 50 60 70 80 1JYD - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSPORT PROTEIN 12-SEP-01 1JYD
TITLE CRYSTAL STRUCTURE OF RECOMBINANT HUMAN SERUM RETINOL-BINDING PROTEIN TITLE 2 AT 1.7 A RESOLUTION
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMA RETINOL-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PRBP; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS RETINOL BINDING PROTEIN, LIPOCALIN SUPERFAMILY, BETA BARREL, KEYWDS 2 TRANSPORT PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR L.H.GREENE,E.D.CHRYSINA,L.I.IRONS,A.C.PAPAGEORGIOU,K.R.ACHARYA,K.BREW
REVDAT 3 13-JUL-11 1JYD 1 VERSN REVDAT 2 24-FEB-09 1JYD 1 VERSN REVDAT 1 01-JUL-03 1JYD 0
JRNL AUTH L.H.GREENE,E.D.CHRYSINA,L.I.IRONS,A.C.PAPAGEORGIOU, JRNL AUTH 2 K.R.ACHARYA,K.BREW JRNL TITL ROLE OF CONSERVED RESIDUES IN STRUCTURE AND STABILITY: JRNL TITL 2 TRYPTOPHANS OF HUMAN SERUM RETINOL-BINDING PROTEIN, A MODEL JRNL TITL 3 FOR THE LIPOCALIN SUPERFAMILY JRNL REF PROTEIN SCI. V. 10 2301 2001 JRNL REFN ISSN 0961-8368 JRNL PMID 11604536 JRNL DOI 10.1110/PS.22901
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.W.COWAN,M.E.NEWCOMER,T.A.JONES REMARK 1 TITL CRYSTALLOGRAPHIC REFINEMENT OF HUMAN SERUM RETINOL-BINDING REMARK 1 TITL 2 PROTEIN AT 2 A RESOLUTION REMARK 1 REF PROTEINS V. 8 44 1990 REMARK 1 REFN ISSN 0887-3585 REMARK 1 REFERENCE 2 REMARK 1 AUTH G.ZANNOTTI,S.OTTONELLO,R.BERNI,H.L.MONACO REMARK 1 TITL CRYSTAL STRUCTURE OF THE TRIGONAL FORM OF HUMAN PLASMA REMARK 1 TITL 2 RETINOL-BINDING PROTEIN AT 2.5 A RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 230 613 1993 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1993.1173
REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2348999.040 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.3 REMARK 3 NUMBER OF REFLECTIONS : 28189 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1380 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4513 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 232 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1407 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 205 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.02000 REMARK 3 B22 (A**2) : 1.02000 REMARK 3 B33 (A**2) : -2.03000 REMARK 3 B12 (A**2) : 1.35000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.20 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.19 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.50 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.73 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.43 REMARK 3 BSOL : 52.51 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PA REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : PARAM.GLYCEROL REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : TOP.GLYCEROL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1JYD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-01. REMARK 100 THE RCSB ID CODE IS RCSB014329.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28189 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.40500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.590 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1RBP REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CACODYLATE, SODIUM CHLORIDE, PH REMARK 280 6.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.66800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.25318 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.99267 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 50.66800 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 29.25318 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 23.99267 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 50.66800 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 29.25318 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.99267 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.50637 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 47.98533 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 58.50637 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 47.98533 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 58.50637 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 47.98533 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ASP A 175 REMARK 465 GLY A 176 REMARK 465 ARG A 177 REMARK 465 SER A 178 REMARK 465 GLU A 179 REMARK 465 ARG A 180 REMARK 465 ASN A 181 REMARK 465 LEU A 182
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 158 O HOH A 798 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 147 CD GLU A 147 OE2 0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 68 -160.35 -110.86 REMARK 500 TYR A 111 -39.77 69.07 REMARK 500 THR A 113 -58.03 -136.92 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 737 DISTANCE = 5.28 ANGSTROMS REMARK 525 HOH A 767 DISTANCE = 5.11 ANGSTROMS REMARK 525 HOH A 779 DISTANCE = 5.67 ANGSTROMS REMARK 525 HOH A 806 DISTANCE = 6.39 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 608
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RBP RELATED DB: PDB REMARK 900 RETINOL TRANSPORT. RETINOL BINDING PROTEIN (HOLO FORM) REMARK 900 RELATED ID: 1BRP RELATED DB: PDB REMARK 900 RETINOL TRANSPORT. HUMAN RBP (HOLO FORM) REMARK 900 RELATED ID: 1BRQ RELATED DB: PDB REMARK 900 RETINOL TRANSPORT. HUMAN RBP (APO FORM) REMARK 900 RELATED ID: 1JYJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A DOUBLE VARIANT (W67L/W91H) OF REMARK 900 RECOMBINANT HUMAN SERUM RETINOL-BINDING PROTEIN AT 2.0 A REMARK 900 RESOLUTION
DBREF 1JYD A 1 182 UNP P02753 RETBP_HUMAN 17 198
SEQADV 1JYD MET A 0 UNP P02753 CLONING ARTIFACT
SEQRES 1 A 183 MET GLU ARG ASP CYS ARG VAL SER SER PHE ARG VAL LYS SEQRES 2 A 183 GLU ASN PHE ASP LYS ALA ARG PHE SER GLY THR TRP TYR SEQRES 3 A 183 ALA MET ALA LYS LYS ASP PRO GLU GLY LEU PHE LEU GLN SEQRES 4 A 183 ASP ASN ILE VAL ALA GLU PHE SER VAL ASP GLU THR GLY SEQRES 5 A 183 GLN MET SER ALA THR ALA LYS GLY ARG VAL ARG LEU LEU SEQRES 6 A 183 ASN ASN TRP ASP VAL CYS ALA ASP MET VAL GLY THR PHE SEQRES 7 A 183 THR ASP THR GLU ASP PRO ALA LYS PHE LYS MET LYS TYR SEQRES 8 A 183 TRP GLY VAL ALA SER PHE LEU GLN LYS GLY ASN ASP ASP SEQRES 9 A 183 HIS TRP ILE VAL ASP THR ASP TYR ASP THR TYR ALA VAL SEQRES 10 A 183 GLN TYR SER CYS ARG LEU LEU ASN LEU ASP GLY THR CYS SEQRES 11 A 183 ALA ASP SER TYR SER PHE VAL PHE SER ARG ASP PRO ASN SEQRES 12 A 183 GLY LEU PRO PRO GLU ALA GLN LYS ILE VAL ARG GLN ARG SEQRES 13 A 183 GLN GLU GLU LEU CYS LEU ALA ARG GLN TYR ARG LEU ILE SEQRES 14 A 183 VAL HIS ASN GLY TYR CYS ASP GLY ARG SER GLU ARG ASN SEQRES 15 A 183 LEU
HET GOL A 600 6 HET GOL A 601 6 HET GOL A 602 6 HET GOL A 603 6 HET GOL A 607 6 HET GOL A 608 6
HETNAM GOL GLYCEROL
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 2 GOL 6(C3 H8 O3) FORMUL 8 HOH *205(H2 O)
HELIX 1 1 ARG A 5 PHE A 9 5 5 HELIX 2 2 ASP A 16 SER A 21 1 6 HELIX 3 3 PRO A 145 LEU A 159 1 15
SHEET 1 A 9 ARG A 166 LEU A 167 0 SHEET 2 A 9 GLY A 22 LYS A 30 -1 N LYS A 29 O ARG A 166 SHEET 3 A 9 CYS A 129 SER A 138 -1 O SER A 134 N LYS A 30 SHEET 4 A 9 TYR A 114 LEU A 123 -1 O ALA A 115 N PHE A 137 SHEET 5 A 9 GLY A 100 THR A 109 -1 N TRP A 105 O TYR A 118 SHEET 6 A 9 LYS A 85 GLY A 92 -1 O PHE A 86 N HIS A 104 SHEET 7 A 9 ASP A 68 THR A 78 -1 N VAL A 74 O TRP A 91 SHEET 8 A 9 MET A 53 ARG A 62 -1 O MET A 53 N PHE A 77 SHEET 9 A 9 LEU A 37 VAL A 47 -1 N GLN A 38 O ARG A 60
SSBOND 1 CYS A 4 CYS A 160 1555 1555 2.03 SSBOND 2 CYS A 70 CYS A 174 1555 1555 2.03 SSBOND 3 CYS A 120 CYS A 129 1555 1555 2.03
SITE 1 AC1 10 LYS A 29 PRO A 32 LEU A 35 PHE A 36 SITE 2 AC1 10 LEU A 37 ARG A 121 TYR A 133 PHE A 135 SITE 3 AC1 10 GOL A 601 HOH A 641 SITE 1 AC2 6 LEU A 37 MET A 73 MET A 88 TYR A 90 SITE 2 AC2 6 GOL A 600 HOH A 780 SITE 1 AC3 5 PHE A 45 HIS A 104 PHE A 135 PHE A 137 SITE 2 AC3 5 HOH A 780 SITE 1 AC4 2 THR A 23 HOH A 634 SITE 1 AC5 10 ASP A 126 THR A 128 HOH A 618 HOH A 619 SITE 2 AC5 10 HOH A 705 HOH A 720 HOH A 727 HOH A 746 SITE 3 AC5 10 HOH A 750 HOH A 758 SITE 1 AC6 2 HOH A 673 HOH A 728
CRYST1 101.336 101.336 71.978 90.00 90.00 120.00 H 3 9
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009868 0.005697 0.000000 0.00000
SCALE2 0.000000 0.011395 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013893 0.00000