10 20 30 40 50 60 70 80 1JX9 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 06-SEP-01 1JX9
TITLE PENICILLIN ACYLASE, MUTANT
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN G ACYLASE ALPHA SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ALPHA SUBUNIT OF PENICILLIN ACYLASE; COMPND 5 SYNONYM: PENICILLIN G AMIDASE, PENICILLIN G AMIDOHYDROLASE; COMPND 6 EC: 3.5.1.11; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PENICILLIN G ACYLASE BETA SUBUNIT; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: BETA SUBUNIT OF PENICILLIN ACYLASE; COMPND 12 SYNONYM: PENICILLIN G AMIDASE, PENICILLIN G AMIDOHYDROLASE; COMPND 13 EC: 3.5.1.11; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: PAC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HB101; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PEC; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PEC; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 12 ORGANISM_TAXID: 562; SOURCE 13 GENE: PAC; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: HB101; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PEC; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PEC
KEYWDS NTN-HYDROLASE FOLD, HELICES, BETA-STRANDS
EXPDTA X-RAY DIFFRACTION
AUTHOR C.M.H.HENSGENS,E.KEIZER,H.J.SNIJDER,B.W.DIJKSTRA
REVDAT 3 24-FEB-09 1JX9 1 VERSN REVDAT 2 30-AUG-05 1JX9 1 JRNL REMARK REVDAT 1 02-SEP-03 1JX9 0
JRNL AUTH W.B.ALKEMA,C.M.HENSGENS,H.J.SNIJDER,E.KEIZER, JRNL AUTH 2 B.W.DIJKSTRA,D.B.JANSSEN JRNL TITL STRUCTURAL AND KINETIC STUDIES ON LIGAND BINDING JRNL TITL 2 IN WILD-TYPE AND ACTIVE-SITE MUTANTS OF PENICILLIN JRNL TITL 3 ACYLASE. JRNL REF PROTEIN ENG.DES.SEL. V. 17 473 2004 JRNL REFN ISSN 1741-0126 JRNL PMID 15254299 JRNL DOI 10.1093/PROTEIN/GZH057
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29743 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1612 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.28 REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1760 REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : 0.2220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6067 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 416 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : 0.10000 REMARK 3 B12 (A**2) : 0.19000 REMARK 3 B13 (A**2) : -0.27000 REMARK 3 B23 (A**2) : -0.24000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.502 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.241 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.179 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.099 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.887 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6234 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8491 ; 1.329 ; 1.920 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 761 ; 3.146 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1058 ;16.063 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 897 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4869 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3271 ; 0.229 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 680 ; 0.145 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.112 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 54 ; 0.238 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.204 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3798 ; 0.597 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6114 ; 1.122 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2436 ; 1.982 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2377 ; 3.173 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1JX9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-01. REMARK 100 THE RCSB ID CODE IS RCSB014292.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAC SCIENCE DIP-2020 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31355 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.16300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1PNK REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MOPS BUFFER, PEG MME 2K, PH 7.2, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE UNIT CELL AND ASYMETRIC UNIT CONTAIN THE ALPHA AND REMARK 300 BETA SUBUNIT OF PA WHICH TOGETHER FORM THE BIOLOGICAL RELEVANT REMARK 300 STRUCTURE
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -100.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 0 REMARK 465 GLU A 1 REMARK 465 GLN A 2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 815 O HOH B 829 2.16 REMARK 500 NZ LYS B 519 O HOH B 894 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 74 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 523 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 542 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 141 -73.86 -97.42 REMARK 500 SER A 151 30.15 -144.49 REMARK 500 ASP B 43 83.09 -162.52 REMARK 500 TRP B 240 51.06 -144.43 REMARK 500 THR B 358 -89.14 -110.96 REMARK 500 ALA B 415 59.76 37.91 REMARK 500 GLU B 522 22.68 -146.87 REMARK 500 LEU B 538 -61.25 -125.60 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 73 OD1 REMARK 620 2 ASP B 73 OD2 48.3 REMARK 620 3 GLU A 152 OE2 165.9 145.8 REMARK 620 4 PRO B 205 O 114.6 66.6 79.5 REMARK 620 5 VAL B 75 O 72.7 120.9 93.2 171.5 REMARK 620 6 ASP B 76 OD1 91.9 106.4 84.3 103.0 71.6 REMARK 620 7 ASP B 252 OD2 90.2 92.4 88.0 97.3 86.7 156.4 REMARK 620 N 1 2 3 4 5 6
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 601
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PNK RELATED DB: PDB REMARK 900 WILD-TYPE PA REMARK 900 RELATED ID: 1PNL RELATED DB: PDB REMARK 900 WILD-TYPE PA WITH PHENYL ACETIC ACID REMARK 900 RELATED ID: 1AI4 RELATED DB: PDB REMARK 900 RELATED ID: 1AI5 RELATED DB: PDB REMARK 900 RELATED ID: 1FXV RELATED DB: PDB REMARK 900 WILD-TYPE PA WITH PENICILLIN G REMARK 900 RELATED ID: 1AI6 RELATED DB: PDB REMARK 900 RELATED ID: 1AI7 RELATED DB: PDB
DBREF 1JX9 A 0 208 UNP P06875 PAC_ECOLI 26 234 DBREF 1JX9 B 1 557 UNP P06875 PAC_ECOLI 290 846
SEQADV 1JX9 ALA B 24 UNP P06875 PHE 313 ENGINEERED SEQADV 1JX9 LEU B 148 UNP P06875 VAL 437 ENGINEERED
SEQRES 1 A 209 ALA GLU GLN SER SER SER GLU ILE LYS ILE VAL ARG ASP SEQRES 2 A 209 GLU TYR GLY MET PRO HIS ILE TYR ALA ASN ASP THR TRP SEQRES 3 A 209 HIS LEU PHE TYR GLY TYR GLY TYR VAL VAL ALA GLN ASP SEQRES 4 A 209 ARG LEU PHE GLN MET GLU MET ALA ARG ARG SER THR GLN SEQRES 5 A 209 GLY THR VAL ALA GLU VAL LEU GLY LYS ASP PHE VAL LYS SEQRES 6 A 209 PHE ASP LYS ASP ILE ARG ARG ASN TYR TRP PRO ASP ALA SEQRES 7 A 209 ILE ARG ALA GLN ILE ALA ALA LEU SER PRO GLU ASP MET SEQRES 8 A 209 SER ILE LEU GLN GLY TYR ALA ASP GLY MET ASN ALA TRP SEQRES 9 A 209 ILE ASP LYS VAL ASN THR ASN PRO GLU THR LEU LEU PRO SEQRES 10 A 209 LYS GLN PHE ASN THR PHE GLY PHE THR PRO LYS ARG TRP SEQRES 11 A 209 GLU PRO PHE ASP VAL ALA MET ILE PHE VAL GLY THR MET SEQRES 12 A 209 ALA ASN ARG PHE SER ASP SER THR SER GLU ILE ASP ASN SEQRES 13 A 209 LEU ALA LEU LEU THR ALA LEU LYS ASP LYS TYR GLY VAL SEQRES 14 A 209 SER GLN GLY MET ALA VAL PHE ASN GLN LEU LYS TRP LEU SEQRES 15 A 209 VAL ASN PRO SER ALA PRO THR THR ILE ALA VAL GLN GLU SEQRES 16 A 209 SER ASN TYR PRO LEU LYS PHE ASN GLN GLN ASN SER GLN SEQRES 17 A 209 THR SEQRES 1 B 557 SER ASN MET TRP VAL ILE GLY LYS SER LYS ALA GLN ASP SEQRES 2 B 557 ALA LYS ALA ILE MET VAL ASN GLY PRO GLN ALA GLY TRP SEQRES 3 B 557 TYR ALA PRO ALA TYR THR TYR GLY ILE GLY LEU HIS GLY SEQRES 4 B 557 ALA GLY TYR ASP VAL THR GLY ASN THR PRO PHE ALA TYR SEQRES 5 B 557 PRO GLY LEU VAL PHE GLY HIS ASN GLY VAL ILE SER TRP SEQRES 6 B 557 GLY SER THR ALA GLY PHE GLY ASP ASP VAL ASP ILE PHE SEQRES 7 B 557 ALA GLU ARG LEU SER ALA GLU LYS PRO GLY TYR TYR LEU SEQRES 8 B 557 HIS ASN GLY LYS TRP VAL LYS MET LEU SER ARG GLU GLU SEQRES 9 B 557 THR ILE THR VAL LYS ASN GLY GLN ALA GLU THR PHE THR SEQRES 10 B 557 VAL TRP ARG THR VAL HIS GLY ASN ILE LEU GLN THR ASP SEQRES 11 B 557 GLN THR THR GLN THR ALA TYR ALA LYS SER ARG ALA TRP SEQRES 12 B 557 ASP GLY LYS GLU LEU ALA SER LEU LEU ALA TRP THR HIS SEQRES 13 B 557 GLN MET LYS ALA LYS ASN TRP GLN GLU TRP THR GLN GLN SEQRES 14 B 557 ALA ALA LYS GLN ALA LEU THR ILE ASN TRP TYR TYR ALA SEQRES 15 B 557 ASP VAL ASN GLY ASN ILE GLY TYR VAL HIS THR GLY ALA SEQRES 16 B 557 TYR PRO ASP ARG GLN SER GLY HIS ASP PRO ARG LEU PRO SEQRES 17 B 557 VAL PRO GLY THR GLY LYS TRP ASP TRP LYS GLY LEU LEU SEQRES 18 B 557 PRO PHE GLU MET ASN PRO LYS VAL TYR ASN PRO GLN SER SEQRES 19 B 557 GLY TYR ILE ALA ASN TRP ASN ASN SER PRO GLN LYS ASP SEQRES 20 B 557 TYR PRO ALA SER ASP LEU PHE ALA PHE LEU TRP GLY GLY SEQRES 21 B 557 ALA ASP ARG VAL THR GLU ILE ASP ARG LEU LEU GLU GLN SEQRES 22 B 557 LYS PRO ARG LEU THR ALA ASP GLN ALA TRP ASP VAL ILE SEQRES 23 B 557 ARG GLN THR SER ARG GLN ASP LEU ASN LEU ARG LEU PHE SEQRES 24 B 557 LEU PRO THR LEU GLN ALA ALA THR SER GLY LEU THR GLN SEQRES 25 B 557 SER ASP PRO ARG ARG GLN LEU VAL GLU THR LEU THR ARG SEQRES 26 B 557 TRP ASP GLY ILE ASN LEU LEU ASN ASP ASP GLY LYS THR SEQRES 27 B 557 TRP GLN GLN PRO GLY SER ALA ILE LEU ASN VAL TRP LEU SEQRES 28 B 557 THR SER MET LEU LYS ARG THR VAL VAL ALA ALA VAL PRO SEQRES 29 B 557 MET PRO PHE ASP LYS TRP TYR SER ALA SER GLY TYR GLU SEQRES 30 B 557 THR THR GLN ASP GLY PRO THR GLY SER LEU ASN ILE SER SEQRES 31 B 557 VAL GLY ALA LYS ILE LEU TYR GLU ALA VAL GLN GLY ASP SEQRES 32 B 557 LYS SER PRO ILE PRO GLN ALA VAL ASP LEU PHE ALA GLY SEQRES 33 B 557 LYS PRO GLN GLN GLU VAL VAL LEU ALA ALA LEU GLU ASP SEQRES 34 B 557 THR TRP GLU THR LEU SER LYS ARG TYR GLY ASN ASN VAL SEQRES 35 B 557 SER ASN TRP LYS THR PRO ALA MET ALA LEU THR PHE ARG SEQRES 36 B 557 ALA ASN ASN PHE PHE GLY VAL PRO GLN ALA ALA ALA GLU SEQRES 37 B 557 GLU THR ARG HIS GLN ALA GLU TYR GLN ASN ARG GLY THR SEQRES 38 B 557 GLU ASN ASP MET ILE VAL PHE SER PRO THR THR SER ASP SEQRES 39 B 557 ARG PRO VAL LEU ALA TRP ASP VAL VAL ALA PRO GLY GLN SEQRES 40 B 557 SER GLY PHE ILE ALA PRO ASP GLY THR VAL ASP LYS HIS SEQRES 41 B 557 TYR GLU ASP GLN LEU LYS MET TYR GLU ASN PHE GLY ARG SEQRES 42 B 557 LYS SER LEU TRP LEU THR LYS GLN ASP VAL GLU ALA HIS SEQRES 43 B 557 LYS GLU SER GLN GLU VAL LEU HIS VAL GLN ARG
HET CA B 601 1
HETNAM CA CALCIUM ION
FORMUL 3 CA CA 2+ FORMUL 4 HOH *416(H2 O)
HELIX 1 1 ASP A 23 GLY A 52 1 30 HELIX 2 2 VAL A 54 GLY A 59 1 6 HELIX 3 3 PHE A 62 ASN A 72 1 11 HELIX 4 4 TRP A 74 ALA A 84 1 11 HELIX 5 5 SER A 86 ASN A 110 1 25 HELIX 6 6 ASN A 110 LEU A 115 1 6 HELIX 7 7 PRO A 116 GLY A 123 1 8 HELIX 8 8 GLU A 130 MET A 142 1 13 HELIX 9 9 SER A 151 GLY A 167 1 17 HELIX 10 10 GLY A 167 LYS A 179 1 13 HELIX 11 11 LYS B 146 GLN B 157 1 12 HELIX 12 12 MET B 158 ALA B 160 5 3 HELIX 13 13 ASN B 162 ALA B 171 1 10 HELIX 14 14 PRO B 222 ASN B 226 5 5 HELIX 15 15 VAL B 264 LYS B 274 1 11 HELIX 16 16 THR B 278 GLN B 292 1 15 HELIX 17 17 ASN B 295 SER B 308 1 14 HELIX 18 18 ASP B 314 ARG B 325 1 12 HELIX 19 19 PRO B 342 THR B 358 1 17 HELIX 20 20 THR B 358 VAL B 363 1 6 HELIX 21 21 PRO B 366 SER B 372 5 7 HELIX 22 22 SER B 390 GLN B 401 1 12 HELIX 23 23 GLY B 402 SER B 405 5 4 HELIX 24 24 PRO B 418 GLY B 439 1 22 HELIX 25 25 ASN B 441 TRP B 445 5 5 HELIX 26 26 ALA B 466 THR B 470 5 5 HELIX 27 27 GLN B 524 ASN B 530 1 7 HELIX 28 28 THR B 539 HIS B 546 1 8
SHEET 1 A10 LYS B 228 TYR B 230 0 SHEET 2 A10 ILE B 188 HIS B 192 -1 N TYR B 190 O VAL B 229 SHEET 3 A10 ILE B 177 ASP B 183 -1 N TRP B 179 O VAL B 191 SHEET 4 A10 ILE B 63 ALA B 69 -1 N THR B 68 O ASN B 178 SHEET 5 A10 PHE B 57 HIS B 59 -1 N GLY B 58 O TRP B 65 SHEET 6 A10 TYR B 42 PRO B 49 -1 N ASN B 47 O PHE B 57 SHEET 7 A10 THR B 32 GLY B 39 -1 N LEU B 37 O VAL B 44 SHEET 8 A10 PRO A 17 TYR A 20 1 N ILE A 19 O GLY B 36 SHEET 9 A10 GLU A 6 ARG A 11 -1 N LYS A 8 O TYR A 20 SHEET 10 A10 SER B 549 HIS B 554 -1 O LEU B 553 N ILE A 7 SHEET 1 B 6 TYR B 236 ASN B 239 0 SHEET 2 B 6 ASN B 2 ILE B 6 -1 N VAL B 5 O ILE B 237 SHEET 3 B 6 ALA B 16 GLY B 21 -1 O GLY B 21 N ASN B 2 SHEET 4 B 6 ASN B 483 PHE B 488 -1 O PHE B 488 N ALA B 16 SHEET 5 B 6 VAL B 497 VAL B 502 -1 O LEU B 498 N VAL B 487 SHEET 6 B 6 LYS B 534 SER B 535 -1 O LYS B 534 N ASP B 501 SHEET 1 C 3 THR B 135 ARG B 141 0 SHEET 2 C 3 VAL B 75 ARG B 81 -1 N ASP B 76 O SER B 140 SHEET 3 C 3 VAL B 209 PRO B 210 1 O VAL B 209 N ALA B 79 SHEET 1 D 2 TYR B 89 HIS B 92 0 SHEET 2 D 2 LYS B 95 LYS B 98 -1 O VAL B 97 N TYR B 90 SHEET 1 E 2 LEU B 100 ILE B 106 0 SHEET 2 E 2 GLU B 114 ARG B 120 -1 O GLU B 114 N ILE B 106 SHEET 1 F 2 PRO B 197 ASP B 198 0 SHEET 2 F 2 GLY B 219 LEU B 220 -1 O GLY B 219 N ASP B 198 SHEET 1 G 2 LEU B 452 PHE B 454 0 SHEET 2 G 2 ARG B 471 GLN B 473 -1 O GLN B 473 N LEU B 452
LINK CA CA B 601 OD1 ASP B 73 1555 1555 2.61 LINK CA CA B 601 OD2 ASP B 73 1555 1555 2.64 LINK CA CA B 601 OE2 GLU A 152 1555 1555 2.25 LINK CA CA B 601 O PRO B 205 1555 1555 2.59 LINK CA CA B 601 O VAL B 75 1555 1555 2.35 LINK CA CA B 601 OD1 ASP B 76 1555 1555 2.46 LINK CA CA B 601 OD2 ASP B 252 1555 1555 2.36
CISPEP 1 ALA B 28 PRO B 29 0 -5.06 CISPEP 2 MET B 365 PRO B 366 0 -2.71 CISPEP 3 ALA B 504 PRO B 505 0 1.19
SITE 1 AC1 6 GLU A 152 ASP B 73 VAL B 75 ASP B 76 SITE 2 AC1 6 PRO B 205 ASP B 252
CRYST1 50.586 63.965 64.020 72.61 74.09 73.68 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.019768 -0.005788 -0.004372 0.00000
SCALE2 0.000000 0.016290 -0.004034 0.00000
SCALE3 0.000000 0.000000 0.016733 0.00000