10 20 30 40 50 60 70 80 1JWE - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 22-JAN-99 1JWE
TITLE NMR STRUCTURE OF THE N-TERMINAL DOMAIN OF E. COLI DNAB TITLE 2 HELICASE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (DNAB HELICASE); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 EC: 3.6.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: N-TERMINAL MET (23) NOT CLEAVED OFF DURING COMPND 8 EXPRESSION
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)
KEYWDS HELICASE, HYDROLASE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR J.WEIGELT,S.E.BROWN,C.S.MILES,N.E.DIXON,G.OTTING
REVDAT 4 24-FEB-09 1JWE 1 VERSN REVDAT 3 01-APR-03 1JWE 1 JRNL REVDAT 2 29-DEC-99 1JWE 4 HEADER COMPND REMARK JRNL REVDAT 2 2 4 ATOM SOURCE SEQRES REVDAT 1 27-JAN-99 1JWE 0
JRNL AUTH J.WEIGELT,S.E.BROWN,C.S.MILES,N.E.DIXON,G.OTTING JRNL TITL NMR STRUCTURE OF THE N-TERMINAL DOMAIN OF E. COLI JRNL TITL 2 DNAB HELICASE: IMPLICATIONS FOR STRUCTURE JRNL TITL 3 REARRANGEMENTS IN THE HELICASE HEXAMER. JRNL REF STRUCTURE FOLD.DES. V. 7 681 1999 JRNL REFN ISSN 0969-2126 JRNL PMID 10404597 JRNL DOI 10.1016/S0969-2126(99)80089-6
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : OPAL REMARK 3 AUTHORS : LUGINBUHL,GUNTERT,BILLETER,WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN REMARK 3 THE JRNL CITATION ABOVE
REMARK 4 REMARK 4 1JWE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-99. REMARK 100 THE RCSB ID CODE IS RCSB000348.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 305 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 20 MM REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX, DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA REMARK 210 METHOD USED : SIMULATED ANNEALING IN REMARK 210 TORSION ANGLE SPACE REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 73 CD - NE - CZ ANGL. DEV. = 8.9 DEGREES REMARK 500 1 ARG A 128 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 6 ARG A 46 CD - NE - CZ ANGL. DEV. = 9.5 DEGREES REMARK 500 6 ARG A 46 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 14 ARG A 62 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 15 ARG A 65 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 17 ARG A 46 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 17 ARG A 126 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 18 ARG A 126 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 30 -65.38 -27.83 REMARK 500 1 ALA A 115 4.34 55.10 REMARK 500 2 HIS A 28 -26.84 -162.62 REMARK 500 2 SER A 29 72.78 52.61 REMARK 500 2 ILE A 81 30.06 -94.45 REMARK 500 2 SER A 114 177.23 60.53 REMARK 500 2 ASN A 117 34.50 -145.66 REMARK 500 3 ILE A 30 -65.61 -28.07 REMARK 500 3 ASP A 43 78.34 -152.30 REMARK 500 3 SER A 114 -30.36 -176.47 REMARK 500 3 ASN A 117 21.24 -76.82 REMARK 500 4 LYS A 24 166.14 59.67 REMARK 500 4 VAL A 25 134.04 69.15 REMARK 500 4 LYS A 110 34.90 -92.76 REMARK 500 4 ASN A 111 36.59 -145.28 REMARK 500 4 SER A 114 170.88 61.19 REMARK 500 5 SER A 114 55.45 39.02 REMARK 500 5 ALA A 115 -38.71 64.81 REMARK 500 5 ALA A 116 -101.70 45.23 REMARK 500 6 PRO A 27 36.52 -68.24 REMARK 500 6 TYR A 60 -33.31 -131.78 REMARK 500 6 ALA A 115 5.44 54.24 REMARK 500 6 MET A 134 65.04 -111.50 REMARK 500 7 VAL A 25 142.89 71.55 REMARK 500 7 HIS A 28 -172.23 46.15 REMARK 500 7 SER A 29 82.56 -160.33 REMARK 500 7 SER A 114 10.69 55.71 REMARK 500 7 ALA A 115 10.23 56.10 REMARK 500 8 SER A 29 66.09 64.70 REMARK 500 8 ALA A 115 -65.35 66.09 REMARK 500 8 ALA A 116 -112.12 44.23 REMARK 500 8 ASN A 117 27.21 -73.56 REMARK 500 9 HIS A 28 168.60 61.00 REMARK 500 9 SER A 29 40.69 -151.32 REMARK 500 9 SER A 114 -95.90 46.78 REMARK 500 9 ASN A 117 49.64 -144.57 REMARK 500 9 ILE A 135 109.64 -47.55 REMARK 500 10 HIS A 28 177.88 55.25 REMARK 500 10 SER A 29 16.36 -155.20 REMARK 500 10 ASP A 43 93.23 -161.47 REMARK 500 10 PRO A 113 49.78 -82.04 REMARK 500 10 SER A 114 27.64 48.42 REMARK 500 10 ASN A 117 54.65 -150.51 REMARK 500 10 MET A 134 39.62 -76.75 REMARK 500 11 HIS A 28 -171.82 59.66 REMARK 500 11 SER A 29 25.40 -142.95 REMARK 500 11 TYR A 60 -33.49 -140.12 REMARK 500 11 SER A 114 -172.74 60.12 REMARK 500 11 ALA A 115 12.31 -65.69 REMARK 500 12 ASP A 43 100.06 -161.51 REMARK 500 12 SER A 98 0.78 -69.61 REMARK 500 12 ASN A 111 39.14 -89.28 REMARK 500 12 SER A 114 -157.84 51.39 REMARK 500 13 HIS A 28 174.85 49.92 REMARK 500 13 SER A 29 30.88 -148.09 REMARK 500 13 PHE A 102 -49.94 68.75 REMARK 500 13 SER A 109 0.53 -67.81 REMARK 500 13 PRO A 113 40.24 -74.69 REMARK 500 13 ALA A 115 17.09 57.60 REMARK 500 13 ILE A 135 -17.46 67.55 REMARK 500 14 ALA A 103 -55.67 -137.90 REMARK 500 14 ALA A 115 10.05 56.37 REMARK 500 14 ASN A 117 26.41 -157.32 REMARK 500 14 MET A 134 45.93 -83.60 REMARK 500 15 SER A 29 49.18 -81.31 REMARK 500 15 SER A 114 -99.18 55.72 REMARK 500 15 MET A 134 26.04 -73.98 REMARK 500 16 HIS A 28 -55.50 -163.16 REMARK 500 16 PHE A 102 -47.03 82.50 REMARK 500 16 SER A 114 177.96 63.18 REMARK 500 16 ALA A 115 70.96 -69.41 REMARK 500 16 ASN A 117 9.49 -164.71 REMARK 500 16 ILE A 135 103.44 60.29 REMARK 500 17 HIS A 28 177.52 56.73 REMARK 500 17 SER A 29 60.43 -150.93 REMARK 500 17 ASN A 111 30.09 -84.22 REMARK 500 17 PRO A 113 91.25 -67.64 REMARK 500 17 ALA A 115 19.33 52.59 REMARK 500 17 MET A 134 44.86 -79.99 REMARK 500 17 ILE A 135 99.90 -56.77 REMARK 500 18 PRO A 27 26.97 -74.83 REMARK 500 18 SER A 114 -179.90 52.48 REMARK 500 18 ALA A 116 -45.61 -136.80 REMARK 500 18 ASN A 117 28.10 -141.46 REMARK 500 18 ILE A 135 155.06 -46.75 REMARK 500 19 LYS A 24 87.91 45.63 REMARK 500 19 VAL A 25 109.01 72.97 REMARK 500 19 HIS A 28 -179.79 179.59 REMARK 500 19 PHE A 102 -54.65 65.04 REMARK 500 19 SER A 114 -85.49 53.39 REMARK 500 19 ALA A 115 16.64 -140.66 REMARK 500 19 ALA A 116 103.87 -46.97 REMARK 500 20 LYS A 24 179.23 55.12 REMARK 500 20 VAL A 25 146.91 72.73 REMARK 500 20 ASN A 111 36.53 -83.77 REMARK 500 20 PRO A 113 37.07 -78.72 REMARK 500 20 SER A 114 179.89 70.43 REMARK 500 20 ALA A 115 98.66 -69.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 23 LYS A 24 1 148.20 REMARK 500 MET A 23 LYS A 24 4 -141.87 REMARK 500 MET A 23 LYS A 24 20 -149.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 ARG A 46 0.11 SIDE_CHAIN REMARK 500 2 ARG A 73 0.10 SIDE_CHAIN REMARK 500 2 ARG A 126 0.12 SIDE_CHAIN REMARK 500 4 ARG A 73 0.12 SIDE_CHAIN REMARK 500 4 TYR A 104 0.07 SIDE_CHAIN REMARK 500 4 ARG A 132 0.10 SIDE_CHAIN REMARK 500 5 ARG A 53 0.12 SIDE_CHAIN REMARK 500 7 TYR A 60 0.10 SIDE_CHAIN REMARK 500 8 ARG A 126 0.09 SIDE_CHAIN REMARK 500 9 ARG A 46 0.16 SIDE_CHAIN REMARK 500 9 ARG A 73 0.10 SIDE_CHAIN REMARK 500 10 TYR A 104 0.07 SIDE_CHAIN REMARK 500 12 ARG A 92 0.09 SIDE_CHAIN REMARK 500 13 ARG A 62 0.08 SIDE_CHAIN REMARK 500 14 TYR A 60 0.12 SIDE_CHAIN REMARK 500 16 ARG A 62 0.08 SIDE_CHAIN REMARK 500 17 ARG A 92 0.08 SIDE_CHAIN REMARK 500 17 ARG A 126 0.08 SIDE_CHAIN REMARK 500 18 TYR A 60 0.06 SIDE_CHAIN REMARK 500 18 ARG A 128 0.09 SIDE_CHAIN REMARK 500 19 ARG A 53 0.10 SIDE_CHAIN REMARK 500 19 TYR A 60 0.09 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1JWE A 23 136 UNP P0ACB0 DNAB_ECOLI 24 137
SEQADV 1JWE MET A 23 UNP P0ACB0 LEU 24 SEE REMARK 999
SEQRES 1 A 114 MET LYS VAL PRO PRO HIS SER ILE GLU ALA GLU GLN SER SEQRES 2 A 114 VAL LEU GLY GLY LEU MET LEU ASP ASN GLU ARG TRP ASP SEQRES 3 A 114 ASP VAL ALA GLU ARG VAL VAL ALA ASP ASP PHE TYR THR SEQRES 4 A 114 ARG PRO HIS ARG HIS ILE PHE THR GLU MET ALA ARG LEU SEQRES 5 A 114 GLN GLU SER GLY SER PRO ILE ASP LEU ILE THR LEU ALA SEQRES 6 A 114 GLU SER LEU GLU ARG GLN GLY GLN LEU ASP SER VAL GLY SEQRES 7 A 114 GLY PHE ALA TYR LEU ALA GLU LEU SER LYS ASN THR PRO SEQRES 8 A 114 SER ALA ALA ASN ILE SER ALA TYR ALA ASP ILE VAL ARG SEQRES 9 A 114 GLU ARG ALA VAL VAL ARG GLU MET ILE SER
HELIX 1 1 ILE A 30 LEU A 42 1 13 HELIX 2 2 ASN A 44 ALA A 51 5 8 HELIX 3 3 ALA A 56 ASP A 58 5 3 HELIX 4 4 ARG A 62 GLU A 76 1 15 HELIX 5 5 LEU A 83 GLN A 93 1 11 HELIX 6 6 ASP A 97 VAL A 99 5 3 HELIX 7 7 GLY A 101 LYS A 110 1 10 HELIX 8 8 ILE A 118 GLU A 133 1 16
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000