1JWC - Header Asymmetric Unit

HEADER RNA 03-SEP-01 1JWC

TITLE NMR SOLUTION STRUCTURE OF THE RNA HAIRPIN BINDING SITE FOR TITLE 2 THE HISTONE STEM-LOOP BINDING PROTEIN

COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'- COMPND 3 R(*GP*GP*CP*CP*AP*AP*AP*GP*GP*CP*CP*CP*UP*UP*UP*UP*CP*AP*GP COMPND 4 *GP*GP*CP*CP*AP*CP*CP*CP*A)-3'; COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: HISTONE MRNA 3' STEM LOOP

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY AT THE 3' SOURCE 4 END OF THE REPLICATION-DEPENDENT HISTONE MRNAS OF SOURCE 5 VERTEBRATES. THIS SEQUENCE CORRESPONDS TO THE MOUSE H4-12 SOURCE 6 GENE.

KEYWDS HAIRPIN, TETRALOOP, 3' STACK, RNA

EXPDTA SOLUTION NMR

MDLTYP MINIMIZED AVERAGE

AUTHOR E.S.DEJONG,W.F.MARZLUFF,E.P.NIKONOWICZ

REVDAT 3 24-FEB-09 1JWC 1 VERSN REVDAT 2 01-APR-03 1JWC 1 JRNL REVDAT 1 20-MAR-02 1JWC 0

JRNL AUTH E.S.DEJONG,W.F.MARZLUFF,E.P.NIKONOWICZ JRNL TITL NMR STRUCTURE AND DYNAMICS OF THE RNA-BINDING SITE JRNL TITL 2 FOR THE HISTONE MRNA STEM-LOOP BINDING PROTEIN. JRNL REF RNA V. 8 83 2002 JRNL REFN ISSN 1355-8382 JRNL PMID 11871662 JRNL DOI 10.1017/S1355838202013869

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER, A. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CALCULATIONS WERE PERFORMED USING REMARK 3 232 CONFORMATIONALLY RESTRICTIVE NOE DERIVED DISTANCE REMARK 3 CONSTRAINTS AND 55 BACKBONE AND 15 RIBOSE TORSION ANGLE REMARK 3 CONSTRAINTS. BASE PAIR CONSTRAINTS WERE INTRODUCED FOR SIX REMARK 3 BASE PAIRS USING HEAVY ATOM-HEAVY ATOM CONSTRAINTS. REMARK 3 COORDINATES ARE FOR THE HAIRPIN DOMAIN ONLY. 5' FLANKING REMARK 3 (GGCCAAA) AND 3' FLANKING (ACCCA) COORDINATES ARE NOT INCLUDED REMARK 3 WITH THIS DEPOSITION. FEW CONSTRAINTS WERE OBTAINED FOR THESE REMARK 3 VERY DYNAMIC REGIONS AND ALTHOUGH THEY WERE INCLUDED AS PART REMARK 3 OF THE STRUCTURE CALCULATION, THEIR CONFORMATIONS APPEAR TO BE REMARK 3 RANDOMLY DISTRIBUTED.

REMARK 4 REMARK 4 1JWC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-SEP-01. REMARK 100 THE RCSB ID CODE IS RCSB014260.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 301; 278 REMARK 210 PH : 6.8; 6.8 REMARK 210 IONIC STRENGTH : 100 MM; 100 MM REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 2.3 MM U-13C; 20 MM KPI, 20 REMARK 210 MM KCL, 0.02 MM EDTA; 2.5 MM REMARK 210 15N-LABELED; 20 MM KPI, 20 MM REMARK 210 KCL, 0.02 MM EDTA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY, 3D_13C-SEPARATED_ REMARK 210 NOESY, 3D_15N-SEPARATED_NOESY, REMARK 210 DQF-COSY, HETCOR REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 980 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING A VARIETY OF 2D AND REMARK 210 3D HOMO- AND HETERO-NUCLEAR NMR METHODS.

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 G A -6 REMARK 465 G A -5 REMARK 465 C A -4 REMARK 465 C A -3 REMARK 465 A A -2 REMARK 465 A A -1 REMARK 465 A A 0 REMARK 465 A A 17 REMARK 465 C A 18 REMARK 465 C A 19 REMARK 465 C A 20 REMARK 465 A A 21

REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 RES CSSEQI ATOMS REMARK 470 G A 1 P OP1 OP2

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.9 DEGREES REMARK 500 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 A A 11 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 A A 11 C8 - N9 - C4 ANGL. DEV. = -2.4 DEGREES REMARK 500 G A 12 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 G A 12 C8 - N9 - C4 ANGL. DEV. = -2.9 DEGREES REMARK 500 G A 13 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 G A 13 C8 - N9 - C4 ANGL. DEV. = -2.9 DEGREES REMARK 500 G A 14 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 G A 14 C8 - N9 - C4 ANGL. DEV. = -2.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JU7 RELATED DB: PDB REMARK 900 1JU7 IS THE OVERLAY OF 10 CONVERGED STRUCTURES FROM WHICH REMARK 900 THIS AVERAGE STRUCTURE WAS PRODUCED.

DBREF 1JWC A -6 21 GB 51308 X13235 573 600

SEQADV 1JWC G A -6 GB 51308 A 573 SEE REMARK 999 SEQADV 1JWC G A -5 GB 51308 A 574 SEE REMARK 999 SEQADV 1JWC C A -3 GB 51308 A 576 SEE REMARK 999

SEQRES 1 A 28 G G C C A A A G G C C C U SEQRES 2 A 28 U U U C A G G G C C A C C SEQRES 3 A 28 C A

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000