1JVE - Header Asymmetric Unit

HEADER DNA 29-AUG-01 1JVE

TITLE NMR STRUCTURE OF AN AT-RICH DNA WITH THE GAA-HAIRPIN LOOP

COMPND MOL_ID: 1; COMPND 2 MOLECULE: AT-RICH DNA WITH THE GAA-HAIRPIN LOOP; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: DESIGNED AT-RICH SEQUENCE

KEYWDS DEOXYRIBONUCLEIC ACID, DNA OLIGONUCLEOTIDE, STEM-AND-LOOP, KEYWDS 2 AT-RICH, GAA HAIRPIN LOOP, PRIBNOW BOX

EXPDTA SOLUTION NMR

NUMMDL 10

AUTHOR N.B.ULYANOV,W.R.BAUER,T.L.JAMES

REVDAT 2 24-FEB-09 1JVE 1 VERSN REVDAT 1 22-MAY-02 1JVE 0

JRNL AUTH N.B.ULYANOV,W.R.BAUER,T.L.JAMES JRNL TITL HIGH-RESOLUTION NMR STRUCTURE OF AN AT-RICH DNA JRNL TITL 2 SEQUENCE. JRNL REF J.BIOMOL.NMR V. 22 265 2002 JRNL REFN ISSN 0925-2738 JRNL PMID 11991355 JRNL DOI 10.1023/A:1014987532546

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5, MINICARLO ALPHA VERSION REMARK 3 AUTHORS : GUNTERT, P. (DYANA), ULYANOV, N.B., GORLER, A., REMARK 3 GORIN, A.A., ZHURKIN, V.B. (MINICARLO) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE NMR REFINEMENT WAS BASED ON A REMARK 3 TOTAL OF 434 INTERPROTON DISTANCE RESTRAINTS (16.1 PER REMARK 3 RESIDUE). THE RESTRAINTS INCLUDE 353 MARDIGRAS-DERIVED REMARK 3 QUANTITATIVE RESTRAINTS FOR NONEXCHANGEABLE PROTONS (WITH AN REMARK 3 AVERAGE FLAT-WELL WIDTH OF 1.51 ANGSTROMS), 63 QUALITATIVE REMARK 3 RESTRAINTS FOR EXCHANGEABLE PROTONS, AND 18 H-BOND RESTRAINTS REMARK 3 FOR WATSON-CRICK GC PAIRS.

REMARK 4 REMARK 4 1JVE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-01. REMARK 100 THE RCSB ID CODE IS RCSB014227.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283 REMARK 210 PH : 8.0 REMARK 210 IONIC STRENGTH : 30 MM K+ REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM DNA; PHOSPHATE BUFFER: 30 REMARK 210 MM K+; 1MM EDTA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D-NOESY, DQF-COSY, TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1, NMRPIPE 1.8, SPARKY REMARK 210 3.1, MARDIGRAS 3.2 REMARK 210 METHOD USED : FULL MATRIX RELAXATION REMARK 210 ANALYSIS OF NOE, RANDOM ERROR REMARK 210 ANALYSIS OF NOE, SIMULATED REMARK 210 ANNEALING USING TORSION ANGLE REMARK 210 DYNAMICS, SIMULATED ANNEALING REMARK 210 USING METROPOLIS MONTE CARLO, REMARK 210 RESTRAINED MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST TARGET FUNCTION (A REMARK 210 WEIGHTED SUM OF CONFORMATIONAL REMARK 210 ENERGY AND RESTRAINT ENERGY). REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES.

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

DBREF 1JVE A 1 27 PDB 1JVE 1JVE 1 27

SEQRES 1 A 27 DC DC DT DA DA DT DT DA DT DA DA DC DG SEQRES 2 A 27 DA DA DG DT DT DA DT DA DA DT DT DA DG SEQRES 3 A 27 DG

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000