10 20 30 40 50 60 70 80 1JQN - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LYASE 07-AUG-01 1JQN
TITLE CRYSTAL STRUCTURE OF E.COLI PHOSPHOENOLPYRUVATE CARBOXYLASE TITLE 2 IN COMPLEX WITH MN2+ AND DCDP
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOENOLPYRUVATE CARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEPCASE, PEPC; COMPND 5 EC: 4.1.1.31; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: F15
KEYWDS BETA BARREL, MN2+ AND DCDP COMPLEX, LYASE
EXPDTA X-RAY DIFFRACTION
AUTHOR H.MATSUMURA,Y.KAI
REVDAT 2 24-FEB-09 1JQN 1 VERSN REVDAT 1 14-JAN-03 1JQN 0
JRNL AUTH H.MATSUMURA,Y.XIE,S.SHIRAKATA,T.INOUE,T.YOSHINAGA, JRNL AUTH 2 Y.UENO,K.IZUI,Y.KAI JRNL TITL CRYSTAL STRUCTURES OF C4 FORM MAIZE AND QUATERNARY JRNL TITL 2 COMPLEX OF E. COLI PHOSPHOENOLPYRUVATE JRNL TITL 3 CARBOXYLASES. JRNL REF STRUCTURE V. 10 1721 2002 JRNL REFN ISSN 0969-2126 JRNL PMID 12467579 JRNL DOI 10.1016/S0969-2126(02)00913-9
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.MATSUMURA,M.TERADA,S.SHIRAKATA,T.INOUE, REMARK 1 AUTH 2 T.YOSHINAGA,K.IZUI,Y.KAI REMARK 1 TITL PLAUSIBLE PHOSPHOENOLPYRUVATE BINDING SITE REMARK 1 TITL 2 REVEALED BY 2.6 A STRUCTURE OF MN2+-BOUND REMARK 1 TITL 3 PHOSPHOENOLPYRUVATE CARBOXYLASE FROM ESCHERICHIA REMARK 1 TITL 4 COLI. REMARK 1 REF FEBS LETT. V. 458 93 1999 REMARK 1 REFN ISSN 0014-5793 REMARK 1 REFERENCE 2 REMARK 1 AUTH Y.KAI,H.MATSUMURA,T.INOUE,K.TERADA,Y.NAGARA, REMARK 1 AUTH 2 T.YOSHINAGA,A.KIHARA,K.TSUMURA,K.IZUI REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF PHOSPHOENOLPYRUVATE REMARK 1 TITL 2 CARBOXYLASE: A PROPOSED MECHANISM FOR ALLOSTERIC REMARK 1 TITL 3 INHIBITION REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 96 823 1999 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 3 REMARK 1 AUTH H.MATSUMURA,T.NAGATA,M.TERADA,S.SHIRAKATA,T.INOUE, REMARK 1 AUTH 2 T.YOSHINAGA,Y.UENO,H.SAZE,K.IZUI,Y.KAI REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION REMARK 1 TITL 2 STUDIES OF C4-FORM PHOSPHOENOLPYRUVATE CARBOXYLASE REMARK 1 TITL 3 FROM MAIZE DIFFRACTION STUDIES OF C4-FORM REMARK 1 TITL 4 PHOSPHOENOLPYRUVATE CARBOXYLASE FROM MAIZE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 55 1937 1999 REMARK 1 REFN ISSN 0907-4449
REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 45753 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2292 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.50 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 300 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6881 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.56 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.10 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.79 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1JQN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-AUG-01. REMARK 100 THE RCSB ID CODE IS RCSB014075.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-99 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-18B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : WEISSENBERG REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45789 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 39.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 11.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG300, TRIS-HCL, MNCL2, DCDP, PH REMARK 280 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 58.97500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 124.53000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 41.56000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 58.97500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 124.53000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.56000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 58.97500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 124.53000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.56000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 58.97500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 124.53000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 41.56000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER GENERATED FROM REMARK 300 MONOMER IN THE ASSYMMETRIC UNIT BY D2 SYMMETRY.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 117.95000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 58.97500 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 124.53000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 41.56000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 58.97500 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 124.53000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 41.56000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 701 REMARK 465 LYS A 702 REMARK 465 ARG A 703 REMARK 465 ARG A 704 REMARK 465 PRO A 705 REMARK 465 THR A 706
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 190 CG CD OE1 OE2 REMARK 470 ARG A 443 CG CD NE CZ NH1 NH2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 305 CD GLU A 305 OE1 0.101 REMARK 500 GLU A 305 CD GLU A 305 OE2 0.108 REMARK 500 GLU A 306 CD GLU A 306 OE1 0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 26 -77.38 -44.89 REMARK 500 ASN A 49 97.31 -68.10 REMARK 500 ASP A 165 14.76 55.24 REMARK 500 THR A 188 72.17 -102.66 REMARK 500 SER A 212 -47.05 -145.58 REMARK 500 MET A 292 152.33 -46.06 REMARK 500 GLU A 306 -8.30 70.29 REMARK 500 LEU A 339 139.01 -170.53 REMARK 500 PRO A 342 -172.30 -60.94 REMARK 500 THR A 347 -8.87 -141.18 REMARK 500 CYS A 366 27.71 -70.15 REMARK 500 MET A 368 43.64 -147.24 REMARK 500 LEU A 390 -61.32 78.84 REMARK 500 GLN A 446 72.59 -115.15 REMARK 500 LYS A 478 -36.61 -131.69 REMARK 500 TYR A 621 20.19 -140.37 REMARK 500 PRO A 687 33.04 -86.98 REMARK 500 MET A 727 19.26 58.08 REMARK 500 TRP A 731 -19.94 -154.73 REMARK 500 LEU A 732 -42.38 -22.88 REMARK 500 MET A 819 70.46 42.19 REMARK 500 ARG A 880 -134.85 56.11 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1045 DISTANCE = 5.62 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 902 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 506 OE1 REMARK 620 2 ASP A 543 OD1 84.0 REMARK 620 3 DCO A 901 O2 93.1 73.1 REMARK 620 4 DCO A 901 O3 162.5 111.6 99.0 REMARK 620 5 HOH A1095 O 74.1 77.2 148.7 100.8 REMARK 620 6 HOH A1096 O 84.0 165.6 115.4 79.4 91.9 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 902 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ASP A 884 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCO A 901
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FIY RELATED DB: PDB REMARK 900 1FIY CONTAINS THE NATIVE STRUCTURE OF E.COLI PEPC. REMARK 900 RELATED ID: 1JQO RELATED DB: PDB REMARK 900 1JQO CONTAINS THE STRUCTURE OF C4-FORM PHOSPHOENOLPYRUVATE REMARK 900 CARBOXYLASE FROM MAIZE
DBREF 1JQN A 1 883 UNP P00864 CAPP_ECOLI 1 883
SEQRES 1 A 883 MET ASN GLU GLN TYR SER ALA LEU ARG SER ASN VAL SER SEQRES 2 A 883 MET LEU GLY LYS VAL LEU GLY GLU THR ILE LYS ASP ALA SEQRES 3 A 883 LEU GLY GLU HIS ILE LEU GLU ARG VAL GLU THR ILE ARG SEQRES 4 A 883 LYS LEU SER LYS SER SER ARG ALA GLY ASN ASP ALA ASN SEQRES 5 A 883 ARG GLN GLU LEU LEU THR THR LEU GLN ASN LEU SER ASN SEQRES 6 A 883 ASP GLU LEU LEU PRO VAL ALA ARG ALA PHE SER GLN PHE SEQRES 7 A 883 LEU ASN LEU ALA ASN THR ALA GLU GLN TYR HIS SER ILE SEQRES 8 A 883 SER PRO LYS GLY GLU ALA ALA SER ASN PRO GLU VAL ILE SEQRES 9 A 883 ALA ARG THR LEU ARG LYS LEU LYS ASN GLN PRO GLU LEU SEQRES 10 A 883 SER GLU ASP THR ILE LYS LYS ALA VAL GLU SER LEU SER SEQRES 11 A 883 LEU GLU LEU VAL LEU THR ALA HIS PRO THR GLU ILE THR SEQRES 12 A 883 ARG ARG THR LEU ILE HIS LYS MET VAL GLU VAL ASN ALA SEQRES 13 A 883 CYS LEU LYS GLN LEU ASP ASN LYS ASP ILE ALA ASP TYR SEQRES 14 A 883 GLU HIS ASN GLN LEU MET ARG ARG LEU ARG GLN LEU ILE SEQRES 15 A 883 ALA GLN SER TRP HIS THR ASP GLU ILE ARG LYS LEU ARG SEQRES 16 A 883 PRO SER PRO VAL ASP GLU ALA LYS TRP GLY PHE ALA VAL SEQRES 17 A 883 VAL GLU ASN SER LEU TRP GLN GLY VAL PRO ASN TYR LEU SEQRES 18 A 883 ARG GLU LEU ASN GLU GLN LEU GLU GLU ASN LEU GLY TYR SEQRES 19 A 883 LYS LEU PRO VAL GLU PHE VAL PRO VAL ARG PHE THR SER SEQRES 20 A 883 TRP MET GLY GLY ASP ARG ASP GLY ASN PRO ASN VAL THR SEQRES 21 A 883 ALA ASP ILE THR ARG HIS VAL LEU LEU LEU SER ARG TRP SEQRES 22 A 883 LYS ALA THR ASP LEU PHE LEU LYS ASP ILE GLN VAL LEU SEQRES 23 A 883 VAL SER GLU LEU SER MET VAL GLU ALA THR PRO GLU LEU SEQRES 24 A 883 LEU ALA LEU VAL GLY GLU GLU GLY ALA ALA GLU PRO TYR SEQRES 25 A 883 ARG TYR LEU MET LYS ASN LEU ARG SER ARG LEU MET ALA SEQRES 26 A 883 THR GLN ALA TRP LEU GLU ALA ARG LEU LYS GLY GLU GLU SEQRES 27 A 883 LEU PRO LYS PRO GLU GLY LEU LEU THR GLN ASN GLU GLU SEQRES 28 A 883 LEU TRP GLU PRO LEU TYR ALA CYS TYR GLN SER LEU GLN SEQRES 29 A 883 ALA CYS GLY MET GLY ILE ILE ALA ASN GLY ASP LEU LEU SEQRES 30 A 883 ASP THR LEU ARG ARG VAL LYS CYS PHE GLY VAL PRO LEU SEQRES 31 A 883 VAL ARG ILE ASP ILE ARG GLN GLU SER THR ARG HIS THR SEQRES 32 A 883 GLU ALA LEU GLY GLU LEU THR ARG TYR LEU GLY ILE GLY SEQRES 33 A 883 ASP TYR GLU SER TRP SER GLU ALA ASP LYS GLN ALA PHE SEQRES 34 A 883 LEU ILE ARG GLU LEU ASN SER LYS ARG PRO LEU LEU PRO SEQRES 35 A 883 ARG ASN TRP GLN PRO SER ALA GLU THR ARG GLU VAL LEU SEQRES 36 A 883 ASP THR CYS GLN VAL ILE ALA GLU ALA PRO GLN GLY SER SEQRES 37 A 883 ILE ALA ALA TYR VAL ILE SER MET ALA LYS THR PRO SER SEQRES 38 A 883 ASP VAL LEU ALA VAL HIS LEU LEU LEU LYS GLU ALA GLY SEQRES 39 A 883 ILE GLY PHE ALA MET PRO VAL ALA PRO LEU PHE GLU THR SEQRES 40 A 883 LEU ASP ASP LEU ASN ASN ALA ASN ASP VAL MET THR GLN SEQRES 41 A 883 LEU LEU ASN ILE ASP TRP TYR ARG GLY LEU ILE GLN GLY SEQRES 42 A 883 LYS GLN MET VAL MET ILE GLY TYR SER ASP SER ALA LYS SEQRES 43 A 883 ASP ALA GLY VAL MET ALA ALA SER TRP ALA GLN TYR GLN SEQRES 44 A 883 ALA GLN ASP ALA LEU ILE LYS THR CYS GLU LYS ALA GLY SEQRES 45 A 883 ILE GLU LEU THR LEU PHE HIS GLY ARG GLY GLY SER ILE SEQRES 46 A 883 GLY ARG GLY GLY ALA PRO ALA HIS ALA ALA LEU LEU SER SEQRES 47 A 883 GLN PRO PRO GLY SER LEU LYS GLY GLY LEU ARG VAL THR SEQRES 48 A 883 GLU GLN GLY GLU MET ILE ARG PHE LYS TYR GLY LEU PRO SEQRES 49 A 883 GLU ILE THR VAL SER SER LEU SER LEU TYR THR GLY ALA SEQRES 50 A 883 ILE LEU GLU ALA ASN LEU LEU PRO PRO PRO GLU PRO LYS SEQRES 51 A 883 GLU SER TRP ARG ARG ILE MET ASP GLU LEU SER VAL ILE SEQRES 52 A 883 SER CYS ASP VAL TYR ARG GLY TYR VAL ARG GLU ASN LYS SEQRES 53 A 883 ASP PHE VAL PRO TYR PHE ARG SER ALA THR PRO GLU GLN SEQRES 54 A 883 GLU LEU GLY LYS LEU PRO LEU GLY SER ARG PRO ALA LYS SEQRES 55 A 883 ARG ARG PRO THR GLY GLY VAL GLU SER LEU ARG ALA ILE SEQRES 56 A 883 PRO TRP ILE PHE ALA TRP THR GLN ASN ARG LEU MET LEU SEQRES 57 A 883 PRO ALA TRP LEU GLY ALA GLY THR ALA LEU GLN LYS VAL SEQRES 58 A 883 VAL GLU ASP GLY LYS GLN SER GLU LEU GLU ALA MET CYS SEQRES 59 A 883 ARG ASP TRP PRO PHE PHE SER THR ARG LEU GLY MET LEU SEQRES 60 A 883 GLU MET VAL PHE ALA LYS ALA ASP LEU TRP LEU ALA GLU SEQRES 61 A 883 TYR TYR ASP GLN ARG LEU VAL ASP LYS ALA LEU TRP PRO SEQRES 62 A 883 LEU GLY LYS GLU LEU ARG ASN LEU GLN GLU GLU ASP ILE SEQRES 63 A 883 LYS VAL VAL LEU ALA ILE ALA ASN ASP SER HIS LEU MET SEQRES 64 A 883 ALA ASP LEU PRO TRP ILE ALA GLU SER ILE GLN LEU ARG SEQRES 65 A 883 ASN ILE TYR THR ASP PRO LEU ASN VAL LEU GLN ALA GLU SEQRES 66 A 883 LEU LEU HIS ARG SER ARG GLN ALA GLU LYS GLU GLY GLN SEQRES 67 A 883 GLU PRO ASP PRO ARG VAL GLU GLN ALA LEU MET VAL THR SEQRES 68 A 883 ILE ALA GLY ILE ALA ALA GLY MET ARG ASN THR GLY
HET MN A 902 1 HET ASP A 884 9 HET DCO A 901 12
HETNAM MN MANGANESE (II) ION HETNAM ASP ASPARTIC ACID HETNAM DCO 3,3-DICHLORO-2-PHOSPHONOMETHYL-ACRYLIC ACID
FORMUL 2 MN MN 2+ FORMUL 3 ASP C4 H7 N O4 FORMUL 4 DCO C4 H5 CL2 O5 P FORMUL 5 HOH *194(H2 O)
HELIX 1 1 TYR A 5 LEU A 27 1 23 HELIX 2 2 GLU A 29 ALA A 47 1 19 HELIX 3 3 ASN A 49 ASN A 62 1 14 HELIX 4 4 SER A 64 SER A 92 1 29 HELIX 5 5 PRO A 101 ASN A 113 1 13 HELIX 6 6 SER A 118 SER A 128 1 11 HELIX 7 7 LEU A 147 ASP A 162 1 16 HELIX 8 8 ALA A 167 THR A 188 1 22 HELIX 9 9 SER A 197 LEU A 232 1 36 HELIX 10 10 THR A 260 LEU A 290 1 31 HELIX 11 11 THR A 296 GLY A 304 1 9 HELIX 12 12 GLU A 310 LYS A 335 1 26 HELIX 13 13 GLN A 348 CYS A 366 1 19 HELIX 14 14 MET A 368 ASN A 373 1 6 HELIX 15 15 GLY A 374 PHE A 386 1 13 HELIX 16 16 SER A 399 LEU A 413 1 15 HELIX 17 17 ASP A 417 TRP A 421 5 5 HELIX 18 18 SER A 422 SER A 436 1 15 HELIX 19 19 SER A 448 ALA A 464 1 17 HELIX 20 20 THR A 479 GLU A 492 1 14 HELIX 21 21 THR A 507 ILE A 531 1 25 HELIX 22 22 GLY A 540 GLY A 572 1 33 HELIX 23 23 GLY A 583 ARG A 587 5 5 HELIX 24 24 GLY A 588 SER A 598 1 11 HELIX 25 25 GLN A 613 GLU A 615 5 3 HELIX 26 26 MET A 616 GLY A 622 1 7 HELIX 27 27 LEU A 623 LEU A 644 1 22 HELIX 28 28 LYS A 650 ARG A 673 1 24 HELIX 29 29 ASP A 677 THR A 686 1 10 HELIX 30 30 PRO A 687 LEU A 694 1 8 HELIX 31 31 GLY A 708 LEU A 712 5 5 HELIX 32 32 ARG A 713 ASN A 724 1 12 HELIX 33 33 MET A 727 TRP A 731 5 5 HELIX 34 34 GLY A 733 GLU A 743 1 11 HELIX 35 35 LYS A 746 ALA A 774 1 29 HELIX 36 36 ASP A 775 VAL A 787 1 13 HELIX 37 37 LEU A 791 ALA A 813 1 23 HELIX 38 38 LEU A 822 GLY A 857 1 36 HELIX 39 39 ASP A 861 ARG A 880 1 20
SHEET 1 A 9 LEU A 131 LEU A 135 0 SHEET 2 A 9 VAL A 243 SER A 247 1 O THR A 246 N LEU A 135 SHEET 3 A 9 ARG A 392 GLU A 398 1 O ARG A 392 N SER A 247 SHEET 4 A 9 ILE A 469 SER A 475 1 O VAL A 473 N ILE A 395 SHEET 5 A 9 VAL A 501 PHE A 505 1 O ALA A 502 N ILE A 474 SHEET 6 A 9 LYS A 534 ILE A 539 1 O MET A 538 N PHE A 505 SHEET 7 A 9 GLU A 574 HIS A 579 1 O PHE A 578 N VAL A 537 SHEET 8 A 9 LEU A 608 GLU A 612 1 O ARG A 609 N HIS A 579 SHEET 9 A 9 LEU A 131 LEU A 135 1 N VAL A 134 O VAL A 610
LINK OE1 GLU A 506 MN MN A 902 1555 1555 2.11 LINK OD1 ASP A 543 MN MN A 902 1555 1555 2.16 LINK O2 DCO A 901 MN MN A 902 1555 1555 1.93 LINK O3 DCO A 901 MN MN A 902 1555 1555 2.10 LINK MN MN A 902 O HOH A1095 1555 1555 2.31 LINK MN MN A 902 O HOH A1096 1555 1555 2.06
SITE 1 AC1 5 GLU A 506 ASP A 543 DCO A 901 HOH A1095 SITE 2 AC1 5 HOH A1096 SITE 1 AC2 7 ARG A 587 MET A 769 LYS A 773 ARG A 832 SITE 2 AC2 7 ASN A 881 HOH A 928 HOH A1090 SITE 1 AC3 11 ARG A 396 GLU A 506 MET A 538 GLY A 540 SITE 2 AC3 11 ASP A 543 GLY A 580 ARG A 581 ARG A 699 SITE 3 AC3 11 ARG A 713 MN A 902 HOH A1096
CRYST1 117.950 249.060 83.120 90.00 90.00 90.00 I 2 2 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008478 0.000000 0.000000 0.00000
SCALE2 0.000000 0.004015 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012031 0.00000