10 20 30 40 50 60 70 80 1JPC - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LECTIN 30-JUL-96 1JPC
TITLE MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM SNOWDROP (GALANTHUS NIVALIS) TITLE 2 BULBS IN COMPLEX WITH MANNOSE-ALPHA1,6-(MANNOSE-ALPHA1,3)-MANNOSE- TITLE 3 ALPHA1,6-(MANNOSE-ALPHA1,3)-MANNOSE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: AGGLUTININ; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SNOWDROP LECTIN; COMPND 5 OTHER_DETAILS: FROM GALANTHUS NIVALIS PLANT FAMILY OF AMARYLLIDACEAE
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALANTHUS NIVALIS; SOURCE 3 ORGANISM_COMMON: COMMON SNOWDROP; SOURCE 4 ORGANISM_TAXID: 4670; SOURCE 5 OTHER_DETAILS: THE SNOWDROP IS A REPRESENTATIVE OF THE PLANT FAMILY SOURCE 6 OF AMARYLLIDACEAE. THE PROTEIN IS ISOLATED FROM THE BULBS.
KEYWDS LECTIN, AGGLUTININ, MANNOPENTAOSE, (MANNOSE-ALPHA1,6-(MANNOSE-ALPHA1, KEYWDS 2 3-MANNOSE- ALPHA1,6-(MANNOSE-ALPHA1,3)-MANNOSE), SNOWDROP
EXPDTA X-RAY DIFFRACTION
AUTHOR C.S.WRIGHT,G.HESTER
REVDAT 3 13-JUL-11 1JPC 1 VERSN REVDAT 2 24-FEB-09 1JPC 1 VERSN REVDAT 1 27-JAN-97 1JPC 0
JRNL AUTH C.S.WRIGHT,G.HESTER JRNL TITL THE 2.0 A STRUCTURE OF A CROSS-LINKED COMPLEX BETWEEN JRNL TITL 2 SNOWDROP LECTIN AND A BRANCHED MANNOPENTAOSE: EVIDENCE FOR JRNL TITL 3 TWO UNIQUE BINDING MODES. JRNL REF STRUCTURE V. 4 1339 1996 JRNL REFN ISSN 0969-2126 JRNL PMID 8939757 JRNL DOI 10.1016/S0969-2126(96)00141-4
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.HESTER,C.S.WRIGHT REMARK 1 TITL THE MANNOSE-SPECIFIC BULB LECTIN FROM GALANTHUS NIVALIS REMARK 1 TITL 2 (SNOWDROP) BINDS MONO-AND DIMANNOSIDES AT DISTINCT SITES. REMARK 1 TITL 3 STRUCTURE ANALYSIS OF REFINED COMPLEXES AT 2.3 A AND 3.0 A REMARK 1 TITL 4 RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 262 516 1996 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH G.HESTER,H.KAKU,I.J.GOLDSTEIN,C.S.WRIGHT REMARK 1 TITL STRUCTURE OF MANNOSE-SPECIFIC SNOWDROP (GALANTHUS NIVALIS) REMARK 1 TITL 2 LECTIN IS REPRESENTATIVE OF A NEW PLANT LECTIN FAMILY REMARK 1 REF NAT.STRUCT.BIOL. V. 2 472 1995 REMARK 1 REFN ISSN 1072-8368
REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 11166 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 843 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 91 REMARK 3 SOLVENT ATOMS : 55 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.43 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.36 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.12 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1JPC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-95 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM V. 5.23 REMARK 200 DATA SCALING SOFTWARE : CCP4 (AGROVATA, SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11166 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 48.16950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 48.16950 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.31750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.16950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.15875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.16950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 51.47625 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.16950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.47625 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.16950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 17.15875 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 48.16950 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 48.16950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 34.31750 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 48.16950 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 48.16950 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 34.31750 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 48.16950 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 51.47625 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 48.16950 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 17.15875 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 48.16950 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 17.15875 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 48.16950 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 51.47625 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 48.16950 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 48.16950 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 34.31750 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 96.33900 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -48.16950 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 17.15875 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 48.16950 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 17.15875 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 96.33900 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 96.33900 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 96.33900 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 96.33900 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 96.33900 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 96.33900 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 132 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 109
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 1 O HOH A 142 8665 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 36 -114.29 67.62 REMARK 500 SER A 49 -176.34 -174.72 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A 110 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A 111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A 112 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A 116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A 117
DBREF 1JPC A 1 109 UNP P30617 LEC_GALNI 24 132
SEQRES 1 A 109 ASP ASN ILE LEU TYR SER GLY GLU THR LEU SER THR GLY SEQRES 2 A 109 GLU PHE LEU ASN TYR GLY SER PHE VAL PHE ILE MET GLN SEQRES 3 A 109 GLU ASP CYS ASN LEU VAL LEU TYR ASP VAL ASP LYS PRO SEQRES 4 A 109 ILE TRP ALA THR ASN THR GLY GLY LEU SER ARG SER CYS SEQRES 5 A 109 PHE LEU SER MET GLN THR ASP GLY ASN LEU VAL VAL TYR SEQRES 6 A 109 ASN PRO SER ASN LYS PRO ILE TRP ALA SER ASN THR GLY SEQRES 7 A 109 GLY GLN ASN GLY ASN TYR VAL CYS ILE LEU GLN LYS ASP SEQRES 8 A 109 ARG ASN VAL VAL ILE TYR GLY THR ASP ARG TRP ALA THR SEQRES 9 A 109 GLY THR HIS THR GLY
HET MAN A 110 12 HET MAN A 111 11 HET MAN A 112 11 HET MAN A 113 12 HET MAN A 114 11 HET MAN A 115 12 HET MAN A 116 11 HET MAN A 117 11
HETNAM MAN ALPHA-D-MANNOSE
FORMUL 2 MAN 8(C6 H12 O6) FORMUL 5 HOH *55(H2 O)
SHEET 1 A 3 ILE A 3 TYR A 5 0 SHEET 2 A 3 VAL A 85 LEU A 88 -1 N CYS A 86 O LEU A 4 SHEET 3 A 3 VAL A 94 TYR A 97 -1 N TYR A 97 O VAL A 85 SHEET 1 B 3 PHE A 15 TYR A 18 0 SHEET 2 B 3 PHE A 21 MET A 25 -1 N PHE A 23 O LEU A 16 SHEET 3 B 3 LEU A 31 ASP A 35 -1 N TYR A 34 O VAL A 22 SHEET 1 C 3 PHE A 53 SER A 55 0 SHEET 2 C 3 VAL A 63 TYR A 65 -1 N TYR A 65 O PHE A 53 SHEET 3 C 3 PRO A 71 ALA A 74 -1 N TRP A 73 O VAL A 64
SSBOND 1 CYS A 29 CYS A 52 1555 1555 2.03
LINK O3 MAN A 110 C1 MAN A 111 1555 1555 1.40 LINK O6 MAN A 110 C1 MAN A 112 1555 1555 1.40 LINK O6 MAN A 113 C1 MAN A 114 1555 1555 1.40 LINK O3 MAN A 115 C1 MAN A 116 1555 1555 1.40 LINK O6 MAN A 115 C1 MAN A 117 1555 1555 1.40 LINK O3 MAN A 110 C1 MAN A 112 1555 6555 1.43 LINK O6 MAN A 110 C1 MAN A 111 1555 6555 1.46 LINK O6 MAN A 110 C1 MAN A 111 6555 1555 1.46 LINK O3 MAN A 110 C1 MAN A 112 6555 1555 1.43 LINK C2 MAN A 111 C1 MAN A 112 1555 6555 1.29 LINK C2 MAN A 111 C3 MAN A 112 1555 6555 1.57 LINK C2 MAN A 111 O2 MAN A 112 1555 6555 1.63 LINK C3 MAN A 111 O3 MAN A 112 1555 6555 1.66 LINK C3 MAN A 111 C2 MAN A 112 1555 6555 1.54 LINK C3 MAN A 111 C4 MAN A 112 1555 6555 1.48 LINK C4 MAN A 111 C3 MAN A 112 1555 6555 1.59 LINK C4 MAN A 111 C5 MAN A 112 1555 6555 1.43 LINK C4 MAN A 111 O4 MAN A 112 1555 6555 1.43 LINK C5 MAN A 111 C6 MAN A 112 1555 6555 1.32 LINK C5 MAN A 111 O5 MAN A 112 1555 6555 1.42 LINK C5 MAN A 111 C4 MAN A 112 1555 6555 1.63 LINK C6 MAN A 111 C5 MAN A 112 1555 6555 1.74 LINK C6 MAN A 111 O6 MAN A 112 1555 6555 1.45 LINK O2 MAN A 111 C2 MAN A 112 1555 6555 1.21 LINK O3 MAN A 111 C3 MAN A 112 1555 6555 1.19 LINK O4 MAN A 111 C4 MAN A 112 1555 6555 1.42 LINK O5 MAN A 111 C1 MAN A 112 1555 6555 1.61 LINK O5 MAN A 111 C5 MAN A 112 1555 6555 1.52 LINK O6 MAN A 111 C6 MAN A 112 1555 6555 1.55 LINK C6 MAN A 111 O6 MAN A 112 6555 1555 1.45 LINK C5 MAN A 111 O5 MAN A 112 6555 1555 1.42 LINK C2 MAN A 111 C1 MAN A 112 6555 1555 1.29 LINK O5 MAN A 111 C1 MAN A 112 6555 1555 1.61 LINK C1 MAN A 111 C2 MAN A 112 6555 1555 1.76 LINK C3 MAN A 111 C2 MAN A 112 6555 1555 1.54 LINK O2 MAN A 111 C2 MAN A 112 6555 1555 1.21 LINK C2 MAN A 111 C3 MAN A 112 6555 1555 1.57 LINK O3 MAN A 111 C3 MAN A 112 6555 1555 1.19 LINK C4 MAN A 111 C3 MAN A 112 6555 1555 1.59 LINK C3 MAN A 111 C4 MAN A 112 6555 1555 1.48 LINK C5 MAN A 111 C4 MAN A 112 6555 1555 1.63 LINK O4 MAN A 111 C4 MAN A 112 6555 1555 1.42 LINK C4 MAN A 111 C5 MAN A 112 6555 1555 1.43 LINK C6 MAN A 111 C5 MAN A 112 6555 1555 1.74 LINK O5 MAN A 111 C5 MAN A 112 6555 1555 1.52 LINK C5 MAN A 111 C6 MAN A 112 6555 1555 1.32 LINK O6 MAN A 111 C6 MAN A 112 6555 1555 1.55 LINK C2 MAN A 111 O2 MAN A 112 6555 1555 1.63 LINK C3 MAN A 111 O3 MAN A 112 6555 1555 1.66 LINK C4 MAN A 111 O4 MAN A 112 6555 1555 1.43 LINK C1 MAN A 111 O5 MAN A 112 6555 1555 1.23 LINK C1 MAN A 111 O5 MAN A 112 1555 6555 1.23 LINK C1 MAN A 111 C2 MAN A 112 1555 6555 1.76
CISPEP 1 GLY A 98 THR A 99 0 -0.33
SITE 1 AC1 4 ASN A 83 HIS A 107 MAN A 111 MAN A 112 SITE 1 AC2 10 ASN A 83 GLN A 89 ASP A 91 ASN A 93 SITE 2 AC2 10 TYR A 97 ASP A 100 ALA A 103 MAN A 110 SITE 3 AC2 10 MAN A 112 HOH A 135 SITE 1 AC3 8 ASN A 83 GLN A 89 ASP A 91 ASN A 93 SITE 2 AC3 8 TYR A 97 ASP A 100 MAN A 110 MAN A 111 SITE 1 AC4 7 GLN A 57 ASP A 59 ASN A 61 TYR A 65 SITE 2 AC4 7 MAN A 114 HOH A 158 HOH A 170 SITE 1 AC5 6 PRO A 71 TRP A 73 ALA A 74 ASN A 76 SITE 2 AC5 6 MAN A 113 HOH A 162 SITE 1 AC6 8 GLN A 26 ASP A 28 ASN A 30 TYR A 34 SITE 2 AC6 8 PRO A 39 MAN A 116 MAN A 117 HOH A 172 SITE 1 AC7 7 GLN A 26 TYR A 34 ASP A 37 LYS A 38 SITE 2 AC7 7 MAN A 115 HOH A 125 HOH A 134 SITE 1 AC8 3 PRO A 39 ASN A 44 MAN A 115
CRYST1 96.339 96.339 68.635 90.00 90.00 90.00 I 41 2 2 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010380 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010380 0.000000 0.00000
SCALE3 0.000000 0.000000 0.014570 0.00000