10 20 30 40 50 60 70 80 1JP0 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA 31-JUL-01 1JP0
TITLE NMR STRUCTURE OF THE LP5.1 HAIRPIN FROM BACILLUS RNASE P TITLE 2 RNA REFINED WITHOUT RESIDUAL DIPOLAR COUPLINGS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'- COMPND 3 R(*GP*GP*CP*GP*GP*UP*GP*CP*UP*GP*AP*GP*AP*UP*GP*CP*CP*CP*GP COMPND 4 *UP*C)-3'; COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: PL5.1 HAIRPIN FROM RNASE P RNA
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: IN VITRO TRANSCRIPTION
KEYWDS RIBONUCLEIC ACID, RNASE P, HAIRPIN, RESIDUAL DIPOLAR KEYWDS 2 COUPLING REFINEMENT, UGNRAU
EXPDTA SOLUTION NMR
NUMMDL 28
AUTHOR T.C.LEEPER,F.J.SCHMIDT,S.R.VAN DOREN
REVDAT 3 24-FEB-09 1JP0 1 VERSN REVDAT 2 01-APR-03 1JP0 1 JRNL REVDAT 1 01-MAY-02 1JP0 0
JRNL AUTH T.C.LEEPER,M.B.MARTIN,H.KIM,S.COX,V.SEMENCHENKO, JRNL AUTH 2 F.J.SCHMIDT,S.R.VAN DOREN JRNL TITL STRUCTURE OF THE UGAGAU HEXALOOP THAT BRACES JRNL TITL 2 BACILLUS RNASE P FOR ACTION. JRNL REF NAT.STRUCT.BIOL. V. 9 397 2002 JRNL REFN ISSN 1072-8368 JRNL PMID 11927952
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER ET. AL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUAL DIPOLAR COUPLING REFINEMENT REMARK 3 WERE NOT USED FOR THIS STRUCTURE, SEE 1JOX.
REMARK 4 REMARK 4 1JP0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-01. REMARK 100 THE RCSB ID CODE IS RCSB014018.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 277; 298; 298; 277 REMARK 210 PH : 5.5; 5.5; 5.5; 5.5; 5.5 REMARK 210 IONIC STRENGTH : 20 MM SODIUM PHOSPHATE; 20 MM REMARK 210 SODIUM PHOSPHATE; 20 MM SODIUM REMARK 210 PHOSPHATE; 20 MM SODIUM REMARK 210 PHOSPHATE; 20 MM SODIUM REMARK 210 PHOSPHATE REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT; REMARK 210 AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM PL5.1 HAIRPIN RNA U- REMARK 210 15N,13C, 20MM PHOSPHATE BUFFER REMARK 210 NA, 100% D2O; 1.0 MM PL5.1 REMARK 210 HAIRPIN RNA U-15N,13C, 20MM REMARK 210 PHOSPHATE BUFFER NA, 8% H2O REMARK 210 92% D2O; 2.5 MM PL5.1 HAIRPIN REMARK 210 RNA U-15N,13C U AND A RESIDUES REMARK 210 ONLY, 20MM PHOSPHATE BUFFER REMARK 210 NA, 100% D2O; 1.8 MM PL5.1 REMARK 210 HAIRPIN RNA U-15N,13C A, C, REMARK 210 AND G RESIDUES ONLY, 20MM REMARK 210 PHOSPHATE BUFFER NA, 100% D2O; REMARK 210 1.8 MM PL5.1 HAIRPIN RNA U- REMARK 210 15N,13C A, C, AND G RESIDUES REMARK 210 ONLY, 20MM PHOSPHATE BUFFER REMARK 210 NA, 8% H2O 92% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 13C-SEPARATED-NOESY (MIXING REMARK 210 TIMES OF 200 AND 250 MS), REMARK 210 NOESY (MIXING TIMES OF 80 AND REMARK 210 140 MS), HCCH-TOCSY, HCCH- REMARK 210 COSY, 13C-HETERO-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX, INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER, VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 28 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 26 A A 13 N9 - C1' - C2' ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 20 C A 21 0.07 SIDE_CHAIN REMARK 500 21 C A 21 0.06 SIDE_CHAIN REMARK 500 25 G A 5 0.06 SIDE_CHAIN REMARK 500 28 U A 9 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JOX RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE LP5.1 HAIRPIN FROM BACILLUS RNASE P REMARK 900 RNA REFINED WITH RESIDUAL DIPOLAR COUPLINGS.
DBREF 1JP0 A 1 21 PDB 1JP0 1JP0 1 21
SEQRES 1 A 21 G G C G G U G C U G A G A SEQRES 2 A 21 U G C C C G U C
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000