10 20 30 40 50 60 70 80 1JNS - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ISOMERASE 25-JUL-01 1JNS
TITLE NMR STRUCTURE OF THE E. COLI PEPTIDYL-PROLYL CIS/TRANS- TITLE 2 ISOMERASE PARVULIN 10
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PARVULIN, PPIASE C, ROTAMASE C; COMPND 5 EC: 5.2.1.8; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: PARA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: M15[PREP4]; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSEP612
KEYWDS ALPHA-BETA SANDWICH, CIS PEPTIDE BOND, ISOMERASE
EXPDTA SOLUTION NMR
NUMMDL 18
AUTHOR A.KUEHLEWEIN,G.VOLL,B.SCHELBERT,H.KESSLER,G.FISCHER, AUTHOR 2 J.U.RAHFELD,G.GEMMECKER
REVDAT 3 24-FEB-09 1JNS 1 VERSN REVDAT 2 05-APR-05 1JNS 1 JRNL REVDAT 1 17-JUN-03 1JNS 0
JRNL AUTH A.KUEHLEWEIN,G.VOLL,B.H.ALVAREZ,H.KESSLER, JRNL AUTH 2 G.FISCHER,J.U.RAHFELD,G.GEMMECKER JRNL TITL SOLUTION STRUCTURE OF ESCHERICHIA COLI PAR10: THE JRNL TITL 2 PROTOTYPIC MEMBER OF THE PARVULIN FAMILY OF JRNL TITL 3 PEPTIDYL-PROLYL CIS/TRANS ISOMERASES. JRNL REF PROTEIN SCI. V. 13 2378 2004 JRNL REFN ISSN 0961-8368 JRNL PMID 15322281 JRNL DOI 10.1110/PS.04756704
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 1097 NOE REMARK 3 -DERIVED DISTANCE CONSTRAINTS, 68 DIHEDRAL RESTRAINTS FOR CSI- REMARK 3 DERIVED HELICAL REGIONS, 42 3J(HN,HA) RESTRAINTS, 30 DISTANCE REMARK 3 CONSTRAINTS FOR HYDROGEN BONDS BASED ON CSI AND MEXICO DATA.
REMARK 4 REMARK 4 1JNS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-01. REMARK 100 THE RCSB ID CODE IS RCSB013982.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 297.6 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 100 MM KCL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-15N] PARVULIN 10, REMARK 210 10 MM PHOSPHATE BUFFER, PH REMARK 210 6.0, 100 MM KCL, 1 MM EDTA, 1 REMARK 210 MM DTE; 0.8 MM [U-13C, 15N] REMARK 210 PARVULIN 10, 10 MM PHOSPHATE REMARK 210 BUFFER, PH 6.0, 100 MM KCL, 1 REMARK 210 MM EDTA, 1 MM DTE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNHA, 3D_15N-SEPARATED_NOESY, REMARK 210 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 13C/13C-SEPARATED_NOESY, 3D_ REMARK 210 13C/15N-SEPARATED_NOESY, 2D_ REMARK 210 MEXICO REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 750 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, TRIAD 6.6, ARIA REMARK 210 0.53, CNS 0.5, X-PLOR 3.851 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 18 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST RAMACHANDRAN ENERGY REMARK 210 AND NOE VIOLATIONS IN REMARK 210 STRUCTURED REGIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 28 104.65 83.92 REMARK 500 1 ASP A 29 70.48 -175.08 REMARK 500 1 ILE A 39 31.57 38.02 REMARK 500 1 ASP A 48 71.96 -170.82 REMARK 500 1 MET A 57 -77.75 -103.61 REMARK 500 1 SER A 67 -66.21 -93.43 REMARK 500 1 PRO A 73 109.60 -51.07 REMARK 500 1 TYR A 90 -55.35 62.66 REMARK 500 2 ALA A 28 105.49 77.46 REMARK 500 2 ASP A 29 73.17 -175.37 REMARK 500 2 ILE A 39 39.28 38.46 REMARK 500 2 ASP A 48 62.45 -167.93 REMARK 500 2 ARG A 53 -138.60 -63.60 REMARK 500 2 SER A 67 -62.04 -93.95 REMARK 500 2 VAL A 70 47.19 20.19 REMARK 500 2 LEU A 71 -40.25 -167.17 REMARK 500 2 PRO A 73 95.49 -67.48 REMARK 500 2 TYR A 90 -76.93 54.07 REMARK 500 3 LYS A 12 -17.26 80.61 REMARK 500 3 ALA A 28 170.33 79.71 REMARK 500 3 ASP A 29 85.91 109.48 REMARK 500 3 ILE A 39 29.75 38.86 REMARK 500 3 GLN A 54 -41.89 83.50 REMARK 500 3 GLN A 56 -89.24 35.25 REMARK 500 3 MET A 57 -71.74 -1.22 REMARK 500 3 PRO A 69 -179.65 -61.73 REMARK 500 3 TYR A 90 -24.68 82.33 REMARK 500 3 ARG A 91 164.80 55.99 REMARK 500 4 ALA A 28 172.24 79.83 REMARK 500 4 ASP A 29 78.09 114.73 REMARK 500 4 ILE A 39 46.18 32.04 REMARK 500 4 ASP A 48 70.31 -173.83 REMARK 500 4 ARG A 53 -84.19 -50.43 REMARK 500 4 GLN A 54 133.40 -177.35 REMARK 500 4 VAL A 58 133.85 -173.04 REMARK 500 4 SER A 67 -67.42 -96.58 REMARK 500 4 TYR A 90 -85.63 30.41 REMARK 500 5 ALA A 28 102.56 81.19 REMARK 500 5 ASP A 29 67.05 -175.74 REMARK 500 5 ILE A 39 49.06 31.98 REMARK 500 5 ASP A 48 70.96 -173.95 REMARK 500 5 ARG A 53 57.20 -69.25 REMARK 500 5 GLN A 54 39.32 27.48 REMARK 500 5 GLN A 56 -62.48 -155.72 REMARK 500 5 SER A 67 -80.06 -99.61 REMARK 500 5 VAL A 70 -174.89 29.40 REMARK 500 5 LEU A 71 41.67 23.60 REMARK 500 5 PRO A 73 103.84 -47.42 REMARK 500 5 LEU A 89 -155.25 -139.71 REMARK 500 5 TYR A 90 -89.00 32.82 REMARK 500 6 LEU A 20 -80.69 -64.17 REMARK 500 6 ALA A 28 -153.52 82.99 REMARK 500 6 ASP A 29 75.66 61.38 REMARK 500 6 ILE A 39 31.20 38.34 REMARK 500 6 ASP A 48 76.25 -169.65 REMARK 500 6 ARG A 53 -169.03 -108.70 REMARK 500 6 GLN A 56 -93.94 -167.52 REMARK 500 6 MET A 57 -166.66 40.14 REMARK 500 6 VAL A 70 171.41 -57.69 REMARK 500 6 LEU A 71 39.71 38.85 REMARK 500 6 TYR A 90 -87.28 33.37 REMARK 500 6 ARG A 91 -159.90 59.98 REMARK 500 7 ALA A 28 -147.05 87.09 REMARK 500 7 ASP A 29 65.35 75.91 REMARK 500 7 ILE A 39 32.04 38.26 REMARK 500 7 ASP A 48 68.29 -171.89 REMARK 500 7 ARG A 53 -65.18 -163.06 REMARK 500 7 GLN A 56 -64.05 -124.22 REMARK 500 7 MET A 57 -107.13 45.60 REMARK 500 7 VAL A 58 127.51 45.41 REMARK 500 7 SER A 67 -74.58 -94.03 REMARK 500 7 PRO A 69 81.98 -56.47 REMARK 500 7 VAL A 70 65.80 13.41 REMARK 500 7 LEU A 71 -47.41 -166.95 REMARK 500 7 TYR A 90 -61.01 67.49 REMARK 500 8 ALA A 28 -156.91 85.37 REMARK 500 8 ASP A 29 71.59 78.70 REMARK 500 8 ILE A 39 28.95 39.02 REMARK 500 8 ASP A 48 62.75 -170.15 REMARK 500 8 GLN A 54 30.14 -178.10 REMARK 500 8 GLN A 56 -56.27 68.93 REMARK 500 8 TYR A 90 -63.42 65.31 REMARK 500 9 ALA A 28 95.37 34.10 REMARK 500 9 ASP A 29 86.35 -171.68 REMARK 500 9 ILE A 39 45.76 34.14 REMARK 500 9 ASP A 48 63.34 -168.76 REMARK 500 9 GLN A 54 -84.16 27.18 REMARK 500 9 GLN A 56 -65.40 65.99 REMARK 500 9 MET A 57 -56.47 65.29 REMARK 500 9 TYR A 90 -55.29 65.29 REMARK 500 10 ALA A 28 95.51 85.58 REMARK 500 10 ASP A 29 80.01 -177.10 REMARK 500 10 ILE A 39 25.93 44.69 REMARK 500 10 ASP A 48 70.29 -173.06 REMARK 500 10 GLN A 54 47.09 24.98 REMARK 500 10 GLN A 56 -113.56 173.54 REMARK 500 10 MET A 57 -174.48 55.89 REMARK 500 10 SER A 67 -69.23 -91.08 REMARK 500 10 VAL A 70 173.48 -58.71 REMARK 500 10 LEU A 71 19.70 58.70 REMARK 500 10 TYR A 90 -61.45 62.45 REMARK 500 11 LYS A 2 -79.92 -90.03 REMARK 500 11 ALA A 28 99.40 80.19 REMARK 500 11 ASP A 29 82.82 -175.70 REMARK 500 11 ILE A 39 31.63 36.31 REMARK 500 11 ASP A 48 67.25 -165.76 REMARK 500 11 ARG A 53 -46.86 -171.29 REMARK 500 11 GLN A 56 -69.32 64.94 REMARK 500 11 MET A 57 -58.92 62.91 REMARK 500 11 PRO A 69 76.52 -64.98 REMARK 500 11 VAL A 70 45.89 21.29 REMARK 500 11 LEU A 71 46.86 -166.55 REMARK 500 11 GLU A 72 123.97 -170.66 REMARK 500 11 TYR A 90 -24.99 81.27 REMARK 500 11 ARG A 91 -160.13 59.74 REMARK 500 12 ALA A 28 95.03 79.19 REMARK 500 12 ASP A 29 80.42 -177.60 REMARK 500 12 ILE A 39 30.04 36.02 REMARK 500 12 ASP A 48 72.16 -172.67 REMARK 500 12 GLN A 56 -32.96 -178.08 REMARK 500 12 SER A 67 -61.65 -93.38 REMARK 500 12 GLU A 72 89.65 -150.57 REMARK 500 12 TYR A 90 -58.90 72.55 REMARK 500 13 ALA A 28 93.04 81.79 REMARK 500 13 ASP A 29 78.32 179.74 REMARK 500 13 ILE A 39 34.18 38.73 REMARK 500 13 ARG A 45 -68.91 -94.16 REMARK 500 13 ASP A 48 71.12 -172.34 REMARK 500 13 GLN A 54 -88.71 31.35 REMARK 500 13 VAL A 58 137.58 -171.29 REMARK 500 13 VAL A 70 172.63 -58.03 REMARK 500 13 TYR A 90 -43.37 81.91 REMARK 500 13 ARG A 91 -159.52 59.90 REMARK 500 14 THR A 3 -164.76 47.40 REMARK 500 14 ALA A 28 -176.79 81.47 REMARK 500 14 ASP A 29 71.84 115.11 REMARK 500 14 ILE A 39 32.24 38.33 REMARK 500 14 ASP A 48 66.85 -171.01 REMARK 500 14 GLN A 56 -63.70 -128.89 REMARK 500 14 ALA A 60 -28.98 -39.76 REMARK 500 14 LEU A 71 16.02 59.45 REMARK 500 14 TYR A 90 -58.58 64.19 REMARK 500 14 ARG A 91 178.75 60.44 REMARK 500 15 ALA A 28 89.89 83.23 REMARK 500 15 ASP A 29 78.79 -176.92 REMARK 500 15 ILE A 39 48.59 33.39 REMARK 500 15 PRO A 41 66.26 -68.87 REMARK 500 15 SER A 42 -41.95 165.44 REMARK 500 15 ASP A 48 64.71 -169.84 REMARK 500 15 GLN A 54 64.06 -63.44 REMARK 500 15 ALA A 60 -33.32 -39.81 REMARK 500 15 SER A 67 -64.66 -96.44 REMARK 500 15 PRO A 69 79.28 -67.64 REMARK 500 15 VAL A 70 177.86 37.17 REMARK 500 15 LEU A 71 40.92 24.39 REMARK 500 15 TYR A 90 -57.97 80.71 REMARK 500 16 ALA A 28 158.69 80.16 REMARK 500 16 ASP A 29 81.24 118.26 REMARK 500 16 ILE A 39 29.87 37.99 REMARK 500 16 ASP A 48 76.17 -170.38 REMARK 500 16 GLN A 54 -87.47 32.08 REMARK 500 16 VAL A 58 132.75 -39.35 REMARK 500 16 TYR A 90 -86.46 32.85 REMARK 500 17 ALA A 28 96.03 81.81 REMARK 500 17 ASP A 29 84.61 -176.00 REMARK 500 17 ILE A 39 32.72 37.95 REMARK 500 17 ASP A 48 69.37 -171.32 REMARK 500 17 GLN A 56 -53.26 -134.83 REMARK 500 17 MET A 57 -150.73 -119.40 REMARK 500 17 ALA A 60 -29.22 -37.50 REMARK 500 17 TYR A 90 -85.98 34.68 REMARK 500 18 THR A 3 123.98 58.48 REMARK 500 18 ALA A 28 94.48 34.18 REMARK 500 18 ASP A 29 76.41 -177.30 REMARK 500 18 ILE A 39 30.05 36.69 REMARK 500 18 ASP A 48 73.13 -172.51 REMARK 500 18 GLN A 56 -64.43 -129.47 REMARK 500 18 ALA A 60 -33.10 -38.35 REMARK 500 18 PRO A 69 67.10 -68.05 REMARK 500 18 VAL A 70 -169.93 27.68 REMARK 500 18 LEU A 71 30.39 38.65 REMARK 500 18 PRO A 73 107.75 -48.32 REMARK 500 18 TYR A 90 -2.04 70.75 REMARK 500 18 ARG A 91 -163.14 40.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 16 GLN A 56 10.07 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JNT RELATED DB: PDB REMARK 900 SAME PROTEIN, MINIMIZED AVERAGE STRUCTURE
DBREF 1JNS A 1 92 UNP P0A9L5 PPIC_ECOLI 1 92
SEQRES 1 A 92 ALA LYS THR ALA ALA ALA LEU HIS ILE LEU VAL LYS GLU SEQRES 2 A 92 GLU LYS LEU ALA LEU ASP LEU LEU GLU GLN ILE LYS ASN SEQRES 3 A 92 GLY ALA ASP PHE GLY LYS LEU ALA LYS LYS HIS SER ILE SEQRES 4 A 92 CYS PRO SER GLY LYS ARG GLY GLY ASP LEU GLY GLU PHE SEQRES 5 A 92 ARG GLN GLY GLN MET VAL PRO ALA PHE ASP LYS VAL VAL SEQRES 6 A 92 PHE SER CYS PRO VAL LEU GLU PRO THR GLY PRO LEU HIS SEQRES 7 A 92 THR GLN PHE GLY TYR HIS ILE ILE LYS VAL LEU TYR ARG SEQRES 8 A 92 ASN
HELIX 1 1 GLU A 14 GLY A 27 1 14 HELIX 2 2 PHE A 30 LYS A 36 1 7 HELIX 3 3 GLY A 43 GLY A 47 5 5 HELIX 4 4 ALA A 60 SER A 67 1 8
SHEET 1 A 4 GLY A 50 ARG A 53 0 SHEET 2 A 4 THR A 3 VAL A 11 -1 N ALA A 4 O PHE A 52 SHEET 3 A 4 GLY A 82 LEU A 89 -1 N TYR A 83 O VAL A 11 SHEET 4 A 4 THR A 74 THR A 79 -1 O THR A 74 N ILE A 86
CISPEP 1 GLY A 75 PRO A 76 1 -0.23 CISPEP 2 GLY A 75 PRO A 76 2 0.06 CISPEP 3 GLY A 75 PRO A 76 3 1.85 CISPEP 4 GLY A 75 PRO A 76 4 1.70 CISPEP 5 GLY A 75 PRO A 76 5 2.07 CISPEP 6 GLY A 75 PRO A 76 6 -0.22 CISPEP 7 GLY A 75 PRO A 76 7 1.64 CISPEP 8 GLY A 75 PRO A 76 8 0.16 CISPEP 9 GLY A 75 PRO A 76 9 -1.70 CISPEP 10 GLY A 75 PRO A 76 10 -1.43 CISPEP 11 GLY A 75 PRO A 76 11 -0.28 CISPEP 12 GLY A 75 PRO A 76 12 3.44 CISPEP 13 GLY A 75 PRO A 76 13 -0.78 CISPEP 14 GLY A 75 PRO A 76 14 -0.85 CISPEP 15 GLY A 75 PRO A 76 15 0.98 CISPEP 16 GLY A 75 PRO A 76 16 -0.41 CISPEP 17 GLY A 75 PRO A 76 17 -0.35 CISPEP 18 GLY A 75 PRO A 76 18 1.11
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000