10 20 30 40 50 60 70 80 1JK9 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 11-JUL-01 1JK9
TITLE HETERODIMER BETWEEN H48F-YSOD1 AND YCCS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: SOD1; COMPND 5 EC: 1.15.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: COPPER CHAPERONE FOR SUPEROXIDE DISMUTASE; COMPND 10 CHAIN: B, D; COMPND 11 SYNONYM: CCS; COMPND 12 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3D; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 12 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 13 ORGANISM_TAXID: 4932; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET11D
KEYWDS PROTEIN-PROTEIN COMPLEX, HETERODIMER, METALLOCHAPERONE, KEYWDS 2 CHAPERONE, COPPER, AMYOTROPHIC LATERAL SCLEROSIS, LOU KEYWDS 3 GEHRIG'S DISEASE, OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR A.L.LAMB,A.S.TORRES,T.V.O'HALLORAN,A.C.ROSENZWEIG
REVDAT 3 24-FEB-09 1JK9 1 VERSN REVDAT 2 01-APR-03 1JK9 1 JRNL REVDAT 1 05-SEP-01 1JK9 0
JRNL AUTH A.L.LAMB,A.S.TORRES,T.V.O'HALLORAN,A.C.ROSENZWEIG JRNL TITL HETERODIMERIC STRUCTURE OF SUPEROXIDE DISMUTASE IN JRNL TITL 2 COMPLEX WITH ITS METALLOCHAPERONE. JRNL REF NAT.STRUCT.BIOL. V. 8 751 2001 JRNL REFN ISSN 1072-8368 JRNL PMID 11524675 JRNL DOI 10.1038/NSB0901-751
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 30885 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3199 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5954 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 11 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1JK9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUL-01. REMARK 100 THE RCSB ID CODE IS RCSB013872.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-01 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 5ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32933 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 12.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: HETERODIMER REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, AMMONIUM SULFATE, DIOXANE, PH REMARK 280 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 155.80667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.90333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 77.90333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 155.80667 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HETERODIMER COMPRISING ONE REMARK 300 MOLECULE OF YCCS AND ONE MOLECULE OF YSOD1
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -129.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -107.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 52.04500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 90.14458 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -77.90333 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 104.09000 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 389.51667
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASN B 246 REMARK 465 ASN B 247 REMARK 465 ILE B 248 REMARK 465 LYS B 249 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 ASN D 246 REMARK 465 ASN D 247 REMARK 465 ILE D 248 REMARK 465 LYS D 249
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 10 32.76 -67.47 REMARK 500 PHE A 45 88.03 -160.23 REMARK 500 THR A 54 -6.31 -59.07 REMARK 500 ASN A 55 35.42 -151.73 REMARK 500 PHE A 64 104.32 -51.07 REMARK 500 LYS A 68 58.65 39.79 REMARK 500 ASP A 90 -162.39 -70.45 REMARK 500 PRO A 109 -9.85 -49.25 REMARK 500 ASP A 130 -81.28 -81.67 REMARK 500 THR A 131 157.84 -30.48 REMARK 500 PRO A 142 161.99 -49.30 REMARK 500 ASP B 5 44.70 -56.12 REMARK 500 MET B 15 30.18 -148.39 REMARK 500 SER B 50 -175.82 -170.85 REMARK 500 ASN B 112 71.30 -156.10 REMARK 500 LYS B 113 118.46 -177.75 REMARK 500 PRO B 179 37.29 -76.30 REMARK 500 SER B 204 158.35 173.37 REMARK 500 SER B 205 10.73 -59.76 REMARK 500 TRP B 222 13.35 56.13 REMARK 500 LYS C 68 55.64 37.09 REMARK 500 LEU C 126 16.07 57.29 REMARK 500 LYS C 136 -68.34 -106.87 REMARK 500 PRO C 142 170.37 -54.91 REMARK 500 ASN D 4 18.13 -60.59 REMARK 500 ASP D 5 35.78 -74.18 REMARK 500 MET D 15 25.78 -153.23 REMARK 500 HIS D 16 33.05 -94.45 REMARK 500 VAL D 31 106.97 -52.04 REMARK 500 GLN D 44 50.50 37.05 REMARK 500 ASN D 77 14.87 84.49 REMARK 500 ASN D 112 38.25 -147.39 REMARK 500 LYS D 141 41.29 -142.18 REMARK 500 VAL D 143 -3.85 -58.84 REMARK 500 LEU D 165 -145.67 -64.10 REMARK 500 GLU D 202 68.04 -101.62 REMARK 500 SER D 204 42.56 152.22 REMARK 500 SER D 205 19.89 42.72 REMARK 500 GLN D 227 -18.17 -141.11 REMARK 500 THR D 232 -94.32 -144.25 REMARK 500 LEU D 244 67.09 -102.86 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 63 ND1 REMARK 620 2 HIS A 71 ND1 107.5 REMARK 620 3 HIS A 80 ND1 99.5 127.9 REMARK 620 4 ASP A 83 OD1 100.0 94.5 123.8 REMARK 620 5 ASP A 83 OD2 152.7 82.7 93.1 53.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 16 ND1 REMARK 620 2 GLU C 42 OE1 140.7 REMARK 620 3 GLU C 42 OE2 94.9 54.8 REMARK 620 4 HIS D 198 ND1 115.0 92.5 91.8 REMARK 620 5 GLU D 200 OE1 107.0 77.6 123.4 121.8 REMARK 620 6 GLU D 200 OE2 78.1 126.1 167.7 100.3 51.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 71 ND1 REMARK 620 2 ASP C 83 OD1 90.5 REMARK 620 3 ASP C 83 OD2 74.3 52.9 REMARK 620 4 HIS C 80 ND1 125.6 126.4 96.2 REMARK 620 5 HIS C 63 ND1 112.1 97.1 150.0 102.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 16 ND1 REMARK 620 2 GLU A 42 OE2 102.6 REMARK 620 3 GLU B 200 OE2 76.3 102.1 REMARK 620 4 HIS B 198 ND1 135.6 90.9 142.1 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 302 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 303 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 304 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 402
DBREF 1JK9 A 1 153 UNP P00445 SODC_YEAST 1 153 DBREF 1JK9 B 1 249 UNP P40202 CCS1_YEAST 1 249 DBREF 1JK9 C 1 153 UNP P00445 SODC_YEAST 1 153 DBREF 1JK9 D 1 249 UNP P40202 CCS1_YEAST 1 249
SEQADV 1JK9 PHE A 48 UNP P00445 HIS 49 ENGINEERED SEQADV 1JK9 PHE C 48 UNP P00445 HIS 49 ENGINEERED
SEQRES 1 A 153 VAL GLN ALA VAL ALA VAL LEU LYS GLY ASP ALA GLY VAL SEQRES 2 A 153 SER GLY VAL VAL LYS PHE GLU GLN ALA SER GLU SER GLU SEQRES 3 A 153 PRO THR THR VAL SER TYR GLU ILE ALA GLY ASN SER PRO SEQRES 4 A 153 ASN ALA GLU ARG GLY PHE HIS ILE PHE GLU PHE GLY ASP SEQRES 5 A 153 ALA THR ASN GLY CYS VAL SER ALA GLY PRO HIS PHE ASN SEQRES 6 A 153 PRO PHE LYS LYS THR HIS GLY ALA PRO THR ASP GLU VAL SEQRES 7 A 153 ARG HIS VAL GLY ASP MET GLY ASN VAL LYS THR ASP GLU SEQRES 8 A 153 ASN GLY VAL ALA LYS GLY SER PHE LYS ASP SER LEU ILE SEQRES 9 A 153 LYS LEU ILE GLY PRO THR SER VAL VAL GLY ARG SER VAL SEQRES 10 A 153 VAL ILE HIS ALA GLY GLN ASP ASP LEU GLY LYS GLY ASP SEQRES 11 A 153 THR GLU GLU SER LEU LYS THR GLY ASN ALA GLY PRO ARG SEQRES 12 A 153 PRO ALA CYS GLY VAL ILE GLY LEU THR ASN SEQRES 1 B 249 MET THR THR ASN ASP THR TYR GLU ALA THR TYR ALA ILE SEQRES 2 B 249 PRO MET HIS CYS GLU ASN CYS VAL ASN ASP ILE LYS ALA SEQRES 3 B 249 CYS LEU LYS ASN VAL PRO GLY ILE ASN SER LEU ASN PHE SEQRES 4 B 249 ASP ILE GLU GLN GLN ILE MET SER VAL GLU SER SER VAL SEQRES 5 B 249 ALA PRO SER THR ILE ILE ASN THR LEU ARG ASN CYS GLY SEQRES 6 B 249 LYS ASP ALA ILE ILE ARG GLY ALA GLY LYS PRO ASN SER SEQRES 7 B 249 SER ALA VAL ALA ILE LEU GLU THR PHE GLN LYS TYR THR SEQRES 8 B 249 ILE ASP GLN LYS LYS ASP THR ALA VAL ARG GLY LEU ALA SEQRES 9 B 249 ARG ILE VAL GLN VAL GLY GLU ASN LYS THR LEU PHE ASP SEQRES 10 B 249 ILE THR VAL ASN GLY VAL PRO GLU ALA GLY ASN TYR HIS SEQRES 11 B 249 ALA SER ILE HIS GLU LYS GLY ASP VAL SER LYS GLY VAL SEQRES 12 B 249 GLU SER THR GLY LYS VAL TRP HIS LYS PHE ASP GLU PRO SEQRES 13 B 249 ILE GLU CYS PHE ASN GLU SER ASP LEU GLY LYS ASN LEU SEQRES 14 B 249 TYR SER GLY LYS THR PHE LEU SER ALA PRO LEU PRO THR SEQRES 15 B 249 TRP GLN LEU ILE GLY ARG SER PHE VAL ILE SER LYS SER SEQRES 16 B 249 LEU ASN HIS PRO GLU ASN GLU PRO SER SER VAL LYS ASP SEQRES 17 B 249 TYR SER PHE LEU GLY VAL ILE ALA ARG SER ALA GLY VAL SEQRES 18 B 249 TRP GLU ASN ASN LYS GLN VAL CYS ALA CYS THR GLY LYS SEQRES 19 B 249 THR VAL TRP GLU GLU ARG LYS ASP ALA LEU ALA ASN ASN SEQRES 20 B 249 ILE LYS SEQRES 1 C 153 VAL GLN ALA VAL ALA VAL LEU LYS GLY ASP ALA GLY VAL SEQRES 2 C 153 SER GLY VAL VAL LYS PHE GLU GLN ALA SER GLU SER GLU SEQRES 3 C 153 PRO THR THR VAL SER TYR GLU ILE ALA GLY ASN SER PRO SEQRES 4 C 153 ASN ALA GLU ARG GLY PHE HIS ILE PHE GLU PHE GLY ASP SEQRES 5 C 153 ALA THR ASN GLY CYS VAL SER ALA GLY PRO HIS PHE ASN SEQRES 6 C 153 PRO PHE LYS LYS THR HIS GLY ALA PRO THR ASP GLU VAL SEQRES 7 C 153 ARG HIS VAL GLY ASP MET GLY ASN VAL LYS THR ASP GLU SEQRES 8 C 153 ASN GLY VAL ALA LYS GLY SER PHE LYS ASP SER LEU ILE SEQRES 9 C 153 LYS LEU ILE GLY PRO THR SER VAL VAL GLY ARG SER VAL SEQRES 10 C 153 VAL ILE HIS ALA GLY GLN ASP ASP LEU GLY LYS GLY ASP SEQRES 11 C 153 THR GLU GLU SER LEU LYS THR GLY ASN ALA GLY PRO ARG SEQRES 12 C 153 PRO ALA CYS GLY VAL ILE GLY LEU THR ASN SEQRES 1 D 249 MET THR THR ASN ASP THR TYR GLU ALA THR TYR ALA ILE SEQRES 2 D 249 PRO MET HIS CYS GLU ASN CYS VAL ASN ASP ILE LYS ALA SEQRES 3 D 249 CYS LEU LYS ASN VAL PRO GLY ILE ASN SER LEU ASN PHE SEQRES 4 D 249 ASP ILE GLU GLN GLN ILE MET SER VAL GLU SER SER VAL SEQRES 5 D 249 ALA PRO SER THR ILE ILE ASN THR LEU ARG ASN CYS GLY SEQRES 6 D 249 LYS ASP ALA ILE ILE ARG GLY ALA GLY LYS PRO ASN SER SEQRES 7 D 249 SER ALA VAL ALA ILE LEU GLU THR PHE GLN LYS TYR THR SEQRES 8 D 249 ILE ASP GLN LYS LYS ASP THR ALA VAL ARG GLY LEU ALA SEQRES 9 D 249 ARG ILE VAL GLN VAL GLY GLU ASN LYS THR LEU PHE ASP SEQRES 10 D 249 ILE THR VAL ASN GLY VAL PRO GLU ALA GLY ASN TYR HIS SEQRES 11 D 249 ALA SER ILE HIS GLU LYS GLY ASP VAL SER LYS GLY VAL SEQRES 12 D 249 GLU SER THR GLY LYS VAL TRP HIS LYS PHE ASP GLU PRO SEQRES 13 D 249 ILE GLU CYS PHE ASN GLU SER ASP LEU GLY LYS ASN LEU SEQRES 14 D 249 TYR SER GLY LYS THR PHE LEU SER ALA PRO LEU PRO THR SEQRES 15 D 249 TRP GLN LEU ILE GLY ARG SER PHE VAL ILE SER LYS SER SEQRES 16 D 249 LEU ASN HIS PRO GLU ASN GLU PRO SER SER VAL LYS ASP SEQRES 17 D 249 TYR SER PHE LEU GLY VAL ILE ALA ARG SER ALA GLY VAL SEQRES 18 D 249 TRP GLU ASN ASN LYS GLN VAL CYS ALA CYS THR GLY LYS SEQRES 19 D 249 THR VAL TRP GLU GLU ARG LYS ASP ALA LEU ALA ASN ASN SEQRES 20 D 249 ILE LYS
HET ZN A 301 1 HET ZN C 302 1 HET ZN B 303 1 HET ZN D 304 1 HET SO4 A 401 5 HET SO4 C 402 5
HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION
FORMUL 5 ZN 4(ZN 2+) FORMUL 9 SO4 2(O4 S 2-) FORMUL 11 HOH *11(H2 O)
HELIX 1 1 GLY A 56 GLY A 61 1 6 HELIX 2 2 GLU A 132 LYS A 136 5 5 HELIX 3 3 ASN B 19 LYS B 29 1 11 HELIX 4 4 ALA B 53 ASN B 63 1 11 HELIX 5 5 LYS B 141 GLY B 147 5 7 HELIX 6 6 PRO B 181 ILE B 186 1 6 HELIX 7 7 HIS B 198 GLU B 202 5 5 HELIX 8 8 THR B 235 LEU B 244 1 10 HELIX 9 9 ASN C 55 GLY C 61 1 7 HELIX 10 10 CYS D 20 LYS D 29 1 10 HELIX 11 11 ILE D 41 GLN D 43 5 3 HELIX 12 12 ALA D 53 ASN D 63 1 11 HELIX 13 13 LYS D 141 SER D 145 5 5 HELIX 14 14 PRO D 181 LEU D 185 5 5 HELIX 15 15 HIS D 198 GLU D 202 5 5 HELIX 16 16 THR D 235 LEU D 244 1 10
SHEET 1 A 5 ALA A 95 ASP A 101 0 SHEET 2 A 5 THR A 28 ALA A 35 -1 O THR A 28 N ASP A 101 SHEET 3 A 5 SER A 14 GLU A 20 -1 O SER A 14 N ALA A 35 SHEET 4 A 5 GLN A 2 LEU A 7 -1 O ALA A 3 N PHE A 19 SHEET 5 A 5 GLY A 150 THR A 152 -1 N GLY A 150 O VAL A 4 SHEET 1 B 4 ALA A 145 VAL A 148 0 SHEET 2 B 4 SER A 116 ILE A 119 -1 N VAL A 117 O GLY A 147 SHEET 3 B 4 GLU A 42 PHE A 48 -1 O HIS A 46 N VAL A 118 SHEET 4 B 4 ASP A 83 LYS A 88 -1 N MET A 84 O PHE A 45 SHEET 1 C 4 ILE B 69 ALA B 73 0 SHEET 2 C 4 TYR B 7 ALA B 12 -1 O THR B 10 N ARG B 71 SHEET 3 C 4 ILE B 45 SER B 50 -1 N MET B 46 O TYR B 11 SHEET 4 C 4 ILE B 34 ASP B 40 -1 N ASN B 35 O GLU B 49 SHEET 1 D13 ASN B 161 GLU B 162 0 SHEET 2 D13 TYR B 170 ALA B 178 -1 N SER B 171 O ASN B 161 SHEET 3 D13 LYS B 113 VAL B 123 -1 N THR B 114 O ALA B 178 SHEET 4 D13 VAL B 100 GLY B 110 -1 O ARG B 101 N ASN B 121 SHEET 5 D13 SER B 79 THR B 86 -1 O ALA B 80 N ILE B 106 SHEET 6 D13 ALA B 216 ARG B 217 -1 N ALA B 216 O VAL B 81 SHEET 7 D13 SER B 79 THR B 86 -1 O VAL B 81 N ALA B 216 SHEET 8 D13 ASP B 208 VAL B 214 -1 O LEU B 212 N GLU B 85 SHEET 9 D13 SER B 189 SER B 195 -1 N PHE B 190 O GLY B 213 SHEET 10 D13 GLY B 127 HIS B 134 -1 N HIS B 130 O SER B 193 SHEET 11 D13 VAL B 149 LYS B 152 -1 N TRP B 150 O ILE B 133 SHEET 12 D13 GLY B 127 HIS B 134 -1 O ILE B 133 N TRP B 150 SHEET 13 D13 ILE B 157 CYS B 159 -1 N ILE B 157 O TYR B 129 SHEET 1 E 8 ALA C 95 ASP C 101 0 SHEET 2 E 8 THR C 28 ALA C 35 -1 N THR C 28 O ASP C 101 SHEET 3 E 8 SER C 14 GLU C 20 -1 O SER C 14 N ALA C 35 SHEET 4 E 8 GLN C 2 LEU C 7 -1 O ALA C 3 N PHE C 19 SHEET 5 E 8 ALA C 145 LEU C 151 -1 O VAL C 148 N VAL C 6 SHEET 6 E 8 SER C 116 ILE C 119 -1 N VAL C 117 O GLY C 147 SHEET 7 E 8 GLU C 42 PHE C 48 -1 O HIS C 46 N VAL C 118 SHEET 8 E 8 ASP C 83 LYS C 88 -1 N MET C 84 O PHE C 45 SHEET 1 F 4 ILE D 69 ALA D 73 0 SHEET 2 F 4 TYR D 7 ALA D 12 -1 O THR D 10 N ARG D 71 SHEET 3 F 4 ILE D 45 SER D 50 -1 N MET D 46 O TYR D 11 SHEET 4 F 4 ILE D 34 ASP D 40 -1 N ASN D 35 O GLU D 49 SHEET 1 G13 ASP D 208 VAL D 214 0 SHEET 2 G13 SER D 79 THR D 86 -1 N GLU D 85 O LEU D 212 SHEET 3 G13 ALA D 216 ARG D 217 -1 N ALA D 216 O VAL D 81 SHEET 4 G13 SER D 79 THR D 86 -1 O VAL D 81 N ALA D 216 SHEET 5 G13 VAL D 100 GLY D 110 -1 N ARG D 101 O LEU D 84 SHEET 6 G13 LYS D 113 VAL D 123 -1 O LYS D 113 N VAL D 109 SHEET 7 G13 TYR D 170 ALA D 178 -1 N TYR D 170 O VAL D 123 SHEET 8 G13 ILE D 157 GLU D 162 -1 O GLU D 158 N LYS D 173 SHEET 9 G13 GLY D 127 HIS D 134 -1 O GLY D 127 N CYS D 159 SHEET 10 G13 VAL D 149 LYS D 152 -1 N TRP D 150 O ILE D 133 SHEET 11 G13 GLY D 127 HIS D 134 -1 N ILE D 133 O HIS D 151 SHEET 12 G13 SER D 189 SER D 195 -1 O SER D 189 N HIS D 134 SHEET 13 G13 ASP D 208 VAL D 214 -1 N TYR D 209 O LYS D 194
SSBOND 1 CYS A 57 CYS B 229 1555 1555 2.03 SSBOND 2 CYS C 57 CYS D 229 1555 1555 2.04
LINK ZN ZN A 301 ND1 HIS A 63 1555 1555 2.28 LINK ZN ZN A 301 ND1 HIS A 71 1555 1555 2.17 LINK ZN ZN A 301 ND1 HIS A 80 1555 1555 2.20 LINK ZN ZN A 301 OD1 ASP A 83 1555 1555 2.04 LINK ZN ZN A 301 OD2 ASP A 83 1555 1555 2.67 LINK ZN ZN B 303 ND1 HIS B 16 1555 1555 2.16 LINK ZN ZN B 303 OE1 GLU C 42 1555 1555 2.53 LINK ZN ZN B 303 OE2 GLU C 42 1555 1555 2.22 LINK ZN ZN C 302 ND1 HIS C 71 1555 1555 2.21 LINK ZN ZN C 302 OD1 ASP C 83 1555 1555 2.09 LINK ZN ZN C 302 OD2 ASP C 83 1555 1555 2.68 LINK ZN ZN C 302 ND1 HIS C 80 1555 1555 2.08 LINK ZN ZN C 302 ND1 HIS C 63 1555 1555 2.24 LINK ZN ZN D 304 ND1 HIS D 16 1555 1555 2.09 LINK ZN ZN D 304 OE2 GLU A 42 1555 1555 2.16 LINK ZN ZN B 303 ND1 HIS D 198 1555 4457 2.11 LINK ZN ZN B 303 OE1 GLU D 200 1555 4457 2.65 LINK ZN ZN B 303 OE2 GLU D 200 1555 4457 2.38 LINK ZN ZN D 304 OE2 GLU B 200 1555 6656 2.04 LINK ZN ZN D 304 ND1 HIS B 198 1555 6656 2.21
SITE 1 AC1 4 HIS A 63 HIS A 71 HIS A 80 ASP A 83 SITE 1 AC2 4 HIS C 63 HIS C 71 HIS C 80 ASP C 83 SITE 1 AC3 4 HIS B 16 GLU C 42 HIS D 198 GLU D 200 SITE 1 AC4 4 GLU A 42 HIS B 198 GLU B 200 HIS D 16 SITE 1 AC5 6 PHE A 48 HIS A 120 ARG A 143 LYS B 226 SITE 2 AC5 6 CYS B 229 ALA B 230 SITE 1 AC6 5 PHE C 48 ARG C 143 LYS D 226 CYS D 229 SITE 2 AC6 5 ALA D 230
CRYST1 104.090 104.090 233.710 90.00 90.00 120.00 P 32 2 1 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009607 0.005547 0.000000 0.00000
SCALE2 0.000000 0.011093 0.000000 0.00000
SCALE3 0.000000 0.000000 0.004279 0.00000