10 20 30 40 50 60 70 80 1JJS - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION 09-JUL-01 1JJS
TITLE NMR STRUCTURE OF IBID, A DOMAIN OF CBP/P300
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CREB-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CBP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS TRANSCRIPTION REGULATION, COACTIVATOR
EXPDTA SOLUTION NMR
NUMMDL 12
AUTHOR C.H.LIN,B.J.HARE,G.WAGNER,S.C.HARRISON,T.MANIATIS,E.FRAENKEL
REVDAT 2 24-FEB-09 1JJS 1 VERSN REVDAT 1 03-OCT-01 1JJS 0
JRNL AUTH C.H.LIN,B.J.HARE,G.WAGNER,S.C.HARRISON,T.MANIATIS, JRNL AUTH 2 E.FRAENKEL JRNL TITL A SMALL DOMAIN OF CBP/P300 BINDS DIVERSE PROTEINS: JRNL TITL 2 SOLUTION STRUCTURE AND FUNCTIONAL STUDIES. JRNL REF MOL.CELL V. 8 581 2001 JRNL REFN ISSN 1097-2765 JRNL PMID 11583620 JRNL DOI 10.1016/S1097-2765(01)00333-1
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.0 REMARK 3 AUTHORS : JENS LINGE, MICHAEL NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1JJS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-01. REMARK 100 THE RCSB ID CODE IS RCSB013855.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ, 750 MHZ REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY, TALOS, ARIA, CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 12 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-12 REMARK 465 RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ALA A 2 REMARK 465 HIS A 3 REMARK 465 MET A 4 REMARK 465 GLN A 21 REMARK 465 GLN A 22 REMARK 465 GLN A 23 REMARK 465 GLN A 24
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 9 TYR A 47 CE1 TYR A 47 CZ 0.231 REMARK 500 9 TYR A 47 CZ TYR A 47 CE2 -0.205 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 9 TYR A 47 CD1 - CE1 - CZ ANGL. DEV. = -5.9 DEGREES REMARK 500 9 TYR A 47 CE1 - CZ - OH ANGL. DEV. = -18.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 14 -86.07 49.07 REMARK 500 1 SER A 17 -62.92 -175.48 REMARK 500 1 SER A 18 54.63 73.04 REMARK 500 1 ASN A 32 -21.70 99.21 REMARK 500 1 ALA A 45 -59.25 73.73 REMARK 500 2 LYS A 14 62.76 30.26 REMARK 500 2 SER A 15 71.35 55.01 REMARK 500 2 SER A 17 -81.29 -139.46 REMARK 500 2 SER A 18 -64.24 -169.03 REMARK 500 2 PRO A 19 101.92 -54.28 REMARK 500 2 ASN A 32 -11.88 92.85 REMARK 500 2 THR A 44 -52.05 -121.29 REMARK 500 2 ALA A 45 -55.19 101.85 REMARK 500 3 LYS A 14 -86.44 46.13 REMARK 500 3 ASN A 32 -15.29 95.63 REMARK 500 3 ALA A 45 -61.11 90.68 REMARK 500 3 LYS A 46 32.93 -84.85 REMARK 500 3 ALA A 49 58.32 -106.06 REMARK 500 4 LYS A 14 -86.21 47.09 REMARK 500 4 SER A 17 167.02 60.90 REMARK 500 4 PRO A 19 -77.73 -85.48 REMARK 500 4 ASN A 32 -13.56 95.12 REMARK 500 4 THR A 44 -63.16 -124.47 REMARK 500 4 ALA A 45 -65.18 124.62 REMARK 500 4 ALA A 49 43.05 -141.27 REMARK 500 5 LYS A 14 35.70 32.15 REMARK 500 5 SER A 15 67.78 77.67 REMARK 500 5 PRO A 16 30.65 -96.18 REMARK 500 5 SER A 17 -43.28 -174.24 REMARK 500 5 SER A 18 50.63 70.26 REMARK 500 5 ASN A 32 -23.61 98.85 REMARK 500 5 ALA A 45 -62.16 71.40 REMARK 500 5 LYS A 46 11.60 -142.45 REMARK 500 6 LYS A 14 71.09 26.68 REMARK 500 6 SER A 18 62.63 65.07 REMARK 500 6 ASN A 32 -17.26 96.82 REMARK 500 6 ALA A 45 -67.02 83.98 REMARK 500 7 LYS A 14 69.14 21.09 REMARK 500 7 SER A 18 94.66 -37.44 REMARK 500 7 ASN A 32 -10.58 92.56 REMARK 500 7 ALA A 45 -45.39 88.21 REMARK 500 7 TYR A 47 62.98 -104.16 REMARK 500 7 ALA A 49 40.75 -105.62 REMARK 500 8 LYS A 14 54.96 20.94 REMARK 500 8 SER A 15 66.52 73.46 REMARK 500 8 SER A 17 -74.10 -61.27 REMARK 500 8 SER A 18 -61.17 173.94 REMARK 500 8 PRO A 19 96.36 -42.94 REMARK 500 8 ASN A 32 -37.94 108.78 REMARK 500 8 ARG A 43 -28.07 -142.52 REMARK 500 8 ALA A 45 -57.40 73.43 REMARK 500 8 TYR A 47 134.53 -36.08 REMARK 500 8 ALA A 49 -43.53 -151.24 REMARK 500 9 LYS A 14 -83.98 49.71 REMARK 500 9 PRO A 19 94.22 -47.44 REMARK 500 9 ASN A 32 -3.61 89.68 REMARK 500 9 ARG A 43 -32.93 -143.71 REMARK 500 9 ALA A 45 -42.23 88.08 REMARK 500 9 TYR A 47 64.86 64.97 REMARK 500 9 ALA A 49 -49.28 -178.14 REMARK 500 10 LYS A 14 -85.91 47.60 REMARK 500 10 SER A 17 -175.04 -178.99 REMARK 500 10 ASN A 32 -15.45 94.82 REMARK 500 10 ARG A 43 -38.88 -156.39 REMARK 500 10 ALA A 45 -65.20 103.54 REMARK 500 10 TYR A 47 43.71 31.41 REMARK 500 11 LYS A 14 70.53 26.24 REMARK 500 11 ASN A 32 -20.35 98.43 REMARK 500 11 THR A 44 -21.45 -145.46 REMARK 500 11 ALA A 45 -9.53 81.52 REMARK 500 11 ALA A 49 78.63 -108.65 REMARK 500 12 LYS A 14 -81.27 51.44 REMARK 500 12 SER A 17 130.28 70.04 REMARK 500 12 SER A 18 104.22 -48.28 REMARK 500 12 ASN A 32 -15.39 95.49 REMARK 500 12 ALA A 45 -63.62 85.78 REMARK 500 12 LYS A 46 -107.18 -57.16 REMARK 500 12 TYR A 47 62.90 30.97 REMARK 500 12 ALA A 49 21.92 -141.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 PHE A 39 0.07 SIDE_CHAIN REMARK 500 5 PHE A 39 0.07 SIDE_CHAIN REMARK 500 6 PHE A 39 0.07 SIDE_CHAIN REMARK 500 9 PHE A 39 0.06 SIDE_CHAIN REMARK 500 9 TYR A 47 0.08 SIDE_CHAIN REMARK 500 10 PHE A 39 0.07 SIDE_CHAIN REMARK 500 11 PHE A 39 0.08 SIDE_CHAIN REMARK 500 12 PHE A 39 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1JJS A 5 50 UNP P45481 CBP_MOUSE 2067 2112
SEQADV 1JJS GLY A 1 UNP P45481 CLONING ARTIFACT SEQADV 1JJS ALA A 2 UNP P45481 CLONING ARTIFACT SEQADV 1JJS HIS A 3 UNP P45481 CLONING ARTIFACT SEQADV 1JJS MET A 4 UNP P45481 CLONING ARTIFACT
SEQRES 1 A 50 GLY ALA HIS MET ALA LEU GLN ASP LEU LEU ARG THR LEU SEQRES 2 A 50 LYS SER PRO SER SER PRO GLN GLN GLN GLN GLN VAL LEU SEQRES 3 A 50 ASN ILE LEU LYS SER ASN PRO GLN LEU MET ALA ALA PHE SEQRES 4 A 50 ILE LYS GLN ARG THR ALA LYS TYR VAL ALA ASN
HELIX 1 1 ALA A 5 LYS A 14 1 10 HELIX 2 2 VAL A 25 LYS A 30 1 6 HELIX 3 3 GLN A 34 PHE A 39 1 6 HELIX 4 4 ILE A 40 ARG A 43 5 4
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000