10 20 30 40 50 60 70 80 1JJR - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA BINDING PROTEIN 09-JUL-01 1JJR
TITLE THE THREE-DIMENSIONAL STRUCTURE OF THE C-TERMINAL DNA TITLE 2 BINDING DOMAIN OF HUMAN KU70
COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYROID AUTOANTIGEN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 SYNONYM: KU70; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KU70; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A
KEYWDS DNA REPAIR PROTEIN, PROTEIN-DNA INTERACTION, KU70, SOLUTION KEYWDS 2 STRUCTURE, DNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR Z.ZHANG,Y.CHEN
REVDAT 3 24-FEB-09 1JJR 1 VERSN REVDAT 2 24-OCT-01 1JJR 1 JRNL REVDAT 1 03-OCT-01 1JJR 0
JRNL AUTH Z.ZHANG,L.ZHU,D.LIN,F.CHEN,D.J.CHEN,Y.CHEN JRNL TITL THE THREE-DIMENSIONAL STRUCTURE OF THE C-TERMINAL JRNL TITL 2 DNA-BINDING DOMAIN OF HUMAN KU70. JRNL REF J.BIOL.CHEM. V. 276 38231 2001 JRNL REFN ISSN 0021-9258 JRNL PMID 11457852
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR CNS 1.0 REMARK 3 AUTHORS : A.T.BRUNGER, P.D.ADAMS, G.M.CLORE, W.L.DELANO, REMARK 3 P.GROS, R.W.GROSSE-KUNSTLEVE, REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1JJR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-01. REMARK 100 THE RCSB ID CODE IS RCSB013854.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 100 MM NA PHOSPHATE REMARK 210 PRESSURE : 1ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM KU70_CTD 15N,13C: REMARK 210 100MM PHOSPHATE BUFFER PH6.0; REMARK 210 1.0 MM KU70_CTD 15N,13C; 100MM REMARK 210 PHOSPHATE BUFFER PH6.0; 0.8 MM REMARK 210 KU70_CTD 15N; 100MM PHOSPHATE REMARK 210 BUFFER PH6.0 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 98, VNMR 6.1B, DYANA REMARK 210 1.5, X-PLOR CNS 1.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 47 44.45 70.81 REMARK 500 1 GLU A 49 -42.84 163.11 REMARK 500 1 SER A 57 -77.01 -53.26 REMARK 500 1 PHE A 64 158.27 -49.42 REMARK 500 1 THR A 65 -168.00 -73.89 REMARK 500 1 SER A 80 176.58 68.23 REMARK 500 1 LYS A 83 -73.38 -157.39 REMARK 500 1 LYS A 84 -83.77 168.90 REMARK 500 1 PHE A 95 27.66 -148.50 REMARK 500 2 VAL A 45 34.71 -78.43 REMARK 500 2 TYR A 47 50.99 70.42 REMARK 500 2 GLU A 49 -42.16 167.39 REMARK 500 2 SER A 57 -74.37 -53.70 REMARK 500 2 LYS A 58 -74.77 -61.79 REMARK 500 2 PHE A 64 155.80 -49.92 REMARK 500 2 THR A 65 -169.53 -74.40 REMARK 500 2 LYS A 79 24.40 -141.64 REMARK 500 2 SER A 80 -166.99 -77.83 REMARK 500 2 LEU A 82 -86.17 -158.86 REMARK 500 2 LYS A 84 -65.63 169.13 REMARK 500 3 GLU A 49 -43.43 168.16 REMARK 500 3 THR A 65 -168.20 -74.13 REMARK 500 3 SER A 80 -166.89 45.29 REMARK 500 3 LEU A 82 13.09 -153.31 REMARK 500 3 LYS A 84 -79.35 71.39 REMARK 500 3 PHE A 95 34.84 -147.19 REMARK 500 4 VAL A 45 -54.16 -160.52 REMARK 500 4 GLU A 46 -70.49 -164.25 REMARK 500 4 TYR A 47 75.50 -156.17 REMARK 500 4 GLU A 49 -37.22 168.66 REMARK 500 4 SER A 57 -72.75 -54.48 REMARK 500 4 LYS A 58 -74.34 -61.53 REMARK 500 4 PHE A 64 151.79 -49.82 REMARK 500 4 THR A 65 -165.49 -73.87 REMARK 500 4 LYS A 79 75.58 -100.29 REMARK 500 4 SER A 80 -169.07 -75.85 REMARK 500 4 LEU A 82 11.23 -155.40 REMARK 500 4 LYS A 84 -76.82 69.43 REMARK 500 4 PHE A 95 27.96 -147.65 REMARK 500 5 TYR A 47 83.05 64.42 REMARK 500 5 GLU A 49 -39.47 164.83 REMARK 500 5 SER A 57 -76.11 -52.78 REMARK 500 5 PHE A 64 157.26 -49.84 REMARK 500 5 THR A 65 -169.40 -73.86 REMARK 500 5 SER A 80 169.30 65.63 REMARK 500 5 LYS A 83 8.33 -155.88 REMARK 500 5 LYS A 84 -76.48 65.99 REMARK 500 5 PHE A 95 19.75 -147.64 REMARK 500 6 GLU A 49 -39.46 168.24 REMARK 500 6 SER A 57 -75.70 -53.54 REMARK 500 6 LYS A 58 -72.28 -61.74 REMARK 500 6 PHE A 64 161.95 -48.62 REMARK 500 6 SER A 80 -166.15 45.44 REMARK 500 6 LEU A 82 118.62 76.51 REMARK 500 6 LYS A 83 -79.43 62.53 REMARK 500 6 LYS A 84 -46.71 163.68 REMARK 500 6 PHE A 95 -6.09 -145.44 REMARK 500 7 GLU A 49 -45.89 165.22 REMARK 500 7 SER A 57 -73.13 -52.93 REMARK 500 7 PHE A 64 154.17 -48.43 REMARK 500 7 THR A 65 -163.05 -73.09 REMARK 500 7 LEU A 82 -80.19 -159.76 REMARK 500 7 LYS A 84 -81.25 173.97 REMARK 500 7 PHE A 95 43.21 -147.46 REMARK 500 8 GLU A 49 -41.72 166.18 REMARK 500 8 SER A 57 -76.65 -54.29 REMARK 500 8 PHE A 64 152.15 -47.95 REMARK 500 8 THR A 65 -166.66 -73.56 REMARK 500 8 LYS A 79 35.68 -141.60 REMARK 500 8 SER A 80 -162.50 -77.21 REMARK 500 8 LEU A 82 -39.16 -160.26 REMARK 500 8 LYS A 83 -52.96 -157.74 REMARK 500 8 LYS A 84 -76.67 175.24 REMARK 500 8 PHE A 95 17.29 -147.47 REMARK 500 9 VAL A 45 35.37 -78.65 REMARK 500 9 TYR A 47 66.86 -156.78 REMARK 500 9 GLU A 49 -46.20 166.06 REMARK 500 9 SER A 57 -74.90 -55.08 REMARK 500 9 PHE A 64 154.79 -48.68 REMARK 500 9 SER A 80 -176.62 50.04 REMARK 500 9 LYS A 84 -73.98 66.85 REMARK 500 9 PHE A 95 33.11 -147.19 REMARK 500 10 GLU A 46 69.27 76.66 REMARK 500 10 GLU A 49 -35.04 168.11 REMARK 500 10 LYS A 63 -46.11 -139.56 REMARK 500 10 PHE A 64 152.85 -47.07 REMARK 500 10 THR A 65 -169.56 -74.12 REMARK 500 10 LYS A 79 38.44 -142.90 REMARK 500 10 LYS A 83 -6.08 -158.49 REMARK 500 10 LYS A 84 -85.25 61.75 REMARK 500 10 PHE A 95 37.90 -146.30 REMARK 500 11 TYR A 47 75.85 50.27 REMARK 500 11 GLU A 49 -36.23 167.49 REMARK 500 11 SER A 80 -166.78 46.21 REMARK 500 11 LEU A 82 72.79 -159.30 REMARK 500 11 LYS A 83 11.43 -156.03 REMARK 500 11 LYS A 84 -83.87 67.43 REMARK 500 11 PHE A 95 33.47 -147.36 REMARK 500 11 GLN A 96 112.28 -167.40 REMARK 500 12 TYR A 47 72.07 -158.11 REMARK 500 12 GLU A 49 -39.07 167.54 REMARK 500 12 SER A 57 -70.80 -53.49 REMARK 500 12 LYS A 58 -77.12 -61.01 REMARK 500 12 THR A 65 -166.02 -73.35 REMARK 500 12 LYS A 79 76.74 -102.34 REMARK 500 12 SER A 80 -163.06 -161.35 REMARK 500 12 LEU A 82 -73.18 -80.60 REMARK 500 12 PHE A 95 11.31 -146.14 REMARK 500 13 GLU A 46 -69.72 -165.42 REMARK 500 13 TYR A 47 73.89 -157.42 REMARK 500 13 GLU A 49 -40.63 170.25 REMARK 500 13 SER A 57 -73.91 -52.45 REMARK 500 13 THR A 65 -162.86 -73.71 REMARK 500 13 LYS A 84 -78.34 72.13 REMARK 500 14 TYR A 47 120.60 65.70 REMARK 500 14 SER A 48 -33.11 -163.61 REMARK 500 14 GLU A 49 -56.64 169.07 REMARK 500 14 SER A 57 -75.21 -52.31 REMARK 500 14 LYS A 58 -70.48 -61.52 REMARK 500 14 PHE A 64 152.66 -47.08 REMARK 500 14 LEU A 82 -67.77 68.30 REMARK 500 14 LYS A 83 -95.63 -83.73 REMARK 500 14 LYS A 84 -61.34 -177.44 REMARK 500 14 PHE A 95 22.40 -148.75 REMARK 500 15 TYR A 47 83.34 52.82 REMARK 500 15 GLU A 49 -36.45 164.31 REMARK 500 15 SER A 57 -73.76 -53.08 REMARK 500 15 LYS A 58 -70.81 -60.83 REMARK 500 15 PHE A 64 153.41 -48.17 REMARK 500 15 THR A 65 -81.62 -74.94 REMARK 500 15 VAL A 66 -64.84 -160.42 REMARK 500 15 LYS A 83 -75.54 -79.07 REMARK 500 15 LYS A 84 -71.41 166.82 REMARK 500 15 PHE A 95 29.98 -147.21 REMARK 500 16 VAL A 45 76.34 -159.97 REMARK 500 16 GLU A 49 -43.02 166.91 REMARK 500 16 PHE A 64 158.11 -46.78 REMARK 500 16 THR A 65 -167.83 -72.84 REMARK 500 16 SER A 80 -164.90 45.99 REMARK 500 16 LEU A 82 -31.35 -160.49 REMARK 500 16 LYS A 84 -64.57 173.36 REMARK 500 16 PHE A 95 45.13 -148.06 REMARK 500 16 GLN A 96 98.91 -167.36 REMARK 500 17 VAL A 45 -53.51 -160.15 REMARK 500 17 GLU A 49 -34.68 165.40 REMARK 500 17 SER A 57 -70.74 -52.94 REMARK 500 17 LYS A 58 -79.75 -61.56 REMARK 500 17 THR A 65 -169.84 -73.71 REMARK 500 17 LEU A 82 19.24 -158.51 REMARK 500 17 LYS A 83 6.49 -159.15 REMARK 500 17 LYS A 84 -82.40 69.13 REMARK 500 17 PHE A 95 38.04 -146.87 REMARK 500 17 GLN A 96 -167.05 -72.31 REMARK 500 18 GLU A 49 -43.94 163.79 REMARK 500 18 SER A 80 138.79 57.71 REMARK 500 18 LEU A 82 -67.40 68.83 REMARK 500 19 GLU A 49 -37.14 170.38 REMARK 500 19 SER A 57 46.59 -67.36 REMARK 500 19 LYS A 58 -58.95 -175.60 REMARK 500 19 PHE A 64 152.32 -49.54 REMARK 500 19 THR A 65 -167.09 -74.14 REMARK 500 19 SER A 80 173.52 69.68 REMARK 500 19 LEU A 82 53.10 -159.18 REMARK 500 19 LYS A 83 10.16 -156.15 REMARK 500 19 LYS A 84 -71.94 75.03 REMARK 500 20 VAL A 45 84.04 -160.49 REMARK 500 20 GLU A 49 -35.03 169.01 REMARK 500 20 SER A 57 -73.96 -53.61 REMARK 500 20 LYS A 58 -75.56 -62.18 REMARK 500 20 PHE A 64 154.54 -48.00 REMARK 500 20 THR A 65 -167.32 -73.67 REMARK 500 20 SER A 80 -173.55 48.33 REMARK 500 20 LYS A 83 -73.55 -80.38 REMARK 500 20 LYS A 84 -67.32 167.84 REMARK 500 20 PHE A 95 36.12 -146.78 REMARK 500 20 GLN A 96 24.13 -77.89 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1JJR A 44 97 GB 339667 AAA61177 556 609
SEQRES 1 A 151 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 151 LEU VAL PRO ARG GLY SER HIS MET ALA SER PRO GLU GLY SEQRES 3 A 151 LYS VAL THR LYS ARG LYS HIS ASP ASN GLU GLY SER GLY SEQRES 4 A 151 SER LYS ARG PRO LYS VAL GLU TYR SER GLU GLU GLU LEU SEQRES 5 A 151 LYS THR HIS ILE SER LYS GLY THR LEU GLY LYS PHE THR SEQRES 6 A 151 VAL PRO MET LEU LYS GLU ALA CYS ARG ALA TYR GLY LEU SEQRES 7 A 151 LYS SER GLY LEU LYS LYS GLN GLU LEU LEU GLU ALA LEU SEQRES 8 A 151 THR LYS HIS PHE GLN ASP LYS VAL GLU TYR SER GLU GLU SEQRES 9 A 151 GLU LEU LYS THR HIS ILE SER LYS GLY THR LEU GLY LYS SEQRES 10 A 151 PHE THR VAL PRO MET LEU LYS GLU ALA CYS ARG ALA TYR SEQRES 11 A 151 GLY LEU LYS SER GLY LEU LYS LYS GLN GLU LEU LEU GLU SEQRES 12 A 151 ALA LEU THR LYS HIS PHE GLN ASP
HELIX 1 1 GLU A 49 GLY A 59 1 11 HELIX 2 2 THR A 65 GLY A 77 1 13 HELIX 3 3 LYS A 84 HIS A 94 1 11
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000