10 20 30 40 50 60 70 80 1JEI - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER MEMBRANE PROTEIN 18-JUN-01 1JEI
TITLE LEM DOMAIN OF HUMAN INNER NUCLEAR MEMBRANE PROTEIN EMERIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: EMERIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LEM DOMAIN (RESIDUES 2-54); COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: CHEMICAL SYNTHESIS
KEYWDS EMERIN NUCLEUS MEMBRANE DOMAIN DYSTROPHY, MEMBRANE PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR N.WOLFF,B.GILQUIN,K.COURCHAY,I.CALLEBAUT,S.ZINN-JUSTIN
REVDAT 3 24-FEB-09 1JEI 1 VERSN REVDAT 2 17-JUN-03 1JEI 1 JRNL REVDAT 1 04-JUL-01 1JEI 0
JRNL AUTH N.WOLFF,B.GILQUIN,K.COURCHAY,I.CALLEBAUT, JRNL AUTH 2 H.J.WORMAN,S.ZINN-JUSTIN JRNL TITL STRUCTURAL ANALYSIS OF EMERIN, AN INNER NUCLEAR JRNL TITL 2 MEMBRANE PROTEIN MUTATED IN X-LINKED JRNL TITL 3 EMERY-DREIFUSS MUSCULAR DYSTROPHY JRNL REF FEBS LETT. V. 501 171 2001 JRNL REFN ISSN 0014-5793 JRNL PMID 11470279 JRNL DOI 10.1016/S0014-5793(01)02649-7
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.LAGURI,B.GILQUIN,N.WOLFF,R.ROMI-LEBRUN, REMARK 1 AUTH 2 K.COURCHAY,I.CALLEBAUT,H.J.WORMAN,S.ZINN-JUSTIN REMARK 1 TITL STRUCTURAL CHARACTERIZATION OF THE LEM MOTIF REMARK 1 TITL 2 COMMON TO THREE HUMAN INNER NUCLAR MEMBRANE REMARK 1 TITL 3 PROTEINS. REMARK 1 REF STRUCTURE V. 9 503 2001 REMARK 1 REFN ISSN 0969-2126 REMARK 1 DOI 10.1016/S0969-2126(01)00611-6
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1JEI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JUN-01. REMARK 100 THE RCSB ID CODE IS RCSB013682.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : 20MM REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : LEM DOMAIN OF EMERIN 1MM REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 2.0, X-PLOR 3.1 REMARK 210 METHOD USED : SEMI-AUTOMATED ITERATIVE REMARK 210 PROCEDURE USING X-PLOR AND REMARK 210 HOME-WRITTEN C-SHELL PROGRAMS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 2 50.54 -179.09 REMARK 500 1 ASP A 5 -50.92 -134.42 REMARK 500 1 LEU A 6 166.28 -48.75 REMARK 500 1 SER A 7 -165.04 -121.32 REMARK 500 1 ASN A 19 43.04 83.60 REMARK 500 1 PRO A 21 89.78 -63.11 REMARK 500 1 THR A 29 40.65 -82.20 REMARK 500 1 ILE A 37 4.52 -57.17 REMARK 500 1 PHE A 38 -63.77 -92.19 REMARK 500 1 GLN A 43 -36.27 177.99 REMARK 500 1 ARG A 45 -49.85 -169.41 REMARK 500 1 ARG A 46 -69.18 -137.73 REMARK 500 1 SER A 48 166.34 -43.64 REMARK 500 1 SER A 51 -71.79 -114.47 REMARK 500 1 SER A 52 -79.46 -136.88 REMARK 500 2 ASN A 2 42.81 -166.98 REMARK 500 2 LEU A 6 52.67 -175.19 REMARK 500 2 SER A 7 167.97 -38.42 REMARK 500 2 ASP A 8 -48.89 -29.04 REMARK 500 2 ASN A 19 35.31 95.34 REMARK 500 2 PRO A 21 88.05 -62.66 REMARK 500 2 SER A 28 -60.35 -141.06 REMARK 500 2 LYS A 36 37.14 -86.95 REMARK 500 2 TYR A 40 -19.72 -47.98 REMARK 500 2 GLU A 41 -54.01 -122.34 REMARK 500 2 ARG A 44 -120.33 96.86 REMARK 500 2 ARG A 45 -80.68 -166.08 REMARK 500 2 ARG A 46 -50.09 -125.16 REMARK 500 3 ASN A 2 44.61 -142.11 REMARK 500 3 ASP A 5 -58.49 -134.72 REMARK 500 3 LEU A 6 167.88 -43.81 REMARK 500 3 SER A 7 -164.57 -124.00 REMARK 500 3 ASN A 19 38.11 83.62 REMARK 500 3 PRO A 21 94.95 -61.78 REMARK 500 3 THR A 29 35.79 -141.26 REMARK 500 3 LYS A 36 30.98 -87.03 REMARK 500 3 ARG A 44 -139.48 79.67 REMARK 500 3 ARG A 45 -84.53 -178.64 REMARK 500 3 ARG A 46 -76.58 -115.24 REMARK 500 3 LEU A 47 -7.71 80.32 REMARK 500 3 SER A 48 177.12 178.36 REMARK 500 3 SER A 51 -135.58 -147.39 REMARK 500 3 SER A 52 -69.61 -98.44 REMARK 500 4 ASN A 2 55.00 -177.29 REMARK 500 4 TYR A 3 42.49 -85.06 REMARK 500 4 ALA A 4 26.26 -159.54 REMARK 500 4 ASP A 5 42.60 -170.30 REMARK 500 4 LEU A 6 32.38 -140.11 REMARK 500 4 SER A 7 -154.04 18.23 REMARK 500 4 ASN A 19 33.93 91.93 REMARK 500 4 PRO A 21 91.72 -63.51 REMARK 500 4 ILE A 37 5.57 -61.59 REMARK 500 4 PHE A 38 -63.60 -109.05 REMARK 500 4 ARG A 44 176.31 177.42 REMARK 500 4 ARG A 45 -69.13 -156.25 REMARK 500 4 ARG A 46 -72.26 -100.73 REMARK 500 4 LEU A 47 44.03 76.67 REMARK 500 4 SER A 48 66.13 175.23 REMARK 500 5 ASN A 2 49.01 -109.17 REMARK 500 5 ALA A 4 34.23 -93.10 REMARK 500 5 ASP A 5 91.48 -160.11 REMARK 500 5 LEU A 6 50.62 174.66 REMARK 500 5 SER A 7 170.32 -38.96 REMARK 500 5 ASP A 8 -61.80 -21.89 REMARK 500 5 ASN A 19 43.37 85.57 REMARK 500 5 PRO A 21 87.60 -61.44 REMARK 500 5 ILE A 37 6.41 -61.22 REMARK 500 5 PHE A 38 -64.15 -107.35 REMARK 500 5 GLN A 43 -28.56 -179.19 REMARK 500 5 ARG A 44 -94.16 -162.43 REMARK 500 5 ARG A 45 -66.97 110.13 REMARK 500 5 ARG A 46 -62.52 -148.60 REMARK 500 5 LEU A 47 -22.39 89.40 REMARK 500 5 SER A 48 -52.94 162.96 REMARK 500 5 SER A 52 -54.91 -120.65 REMARK 500 6 ASP A 5 -60.57 -135.11 REMARK 500 6 LEU A 6 167.47 -45.06 REMARK 500 6 SER A 7 -161.16 -124.77 REMARK 500 6 ASN A 19 44.98 83.93 REMARK 500 6 PRO A 21 87.26 -60.28 REMARK 500 6 THR A 29 14.84 -141.19 REMARK 500 6 ILE A 37 -0.75 -54.28 REMARK 500 6 ARG A 45 -57.64 81.91 REMARK 500 6 LEU A 47 42.31 174.52 REMARK 500 6 SER A 48 63.77 -155.01 REMARK 500 6 SER A 51 -79.38 -121.51 REMARK 500 7 ASN A 2 45.68 165.45 REMARK 500 7 LEU A 6 141.15 172.20 REMARK 500 7 ASN A 19 39.31 80.74 REMARK 500 7 PRO A 21 89.97 -63.13 REMARK 500 7 THR A 29 31.96 -140.87 REMARK 500 7 ILE A 37 4.52 -60.77 REMARK 500 7 ARG A 45 -60.84 -138.29 REMARK 500 7 ARG A 46 -51.59 -138.79 REMARK 500 7 SER A 48 61.74 72.49 REMARK 500 7 PRO A 50 -70.21 -76.63 REMARK 500 7 SER A 51 -72.05 -136.92 REMARK 500 8 ASN A 2 47.62 -149.22 REMARK 500 8 ASP A 5 -56.10 -123.71 REMARK 500 8 LEU A 6 167.08 -43.81 REMARK 500 8 SER A 7 -168.57 -120.51 REMARK 500 8 ASN A 19 42.07 79.83 REMARK 500 8 PRO A 21 93.22 -62.71 REMARK 500 8 SER A 28 -48.99 157.87 REMARK 500 8 TYR A 33 -48.82 -155.68 REMARK 500 8 ILE A 37 4.66 -62.98 REMARK 500 8 ARG A 44 -150.28 -161.67 REMARK 500 8 ARG A 45 -26.91 83.91 REMARK 500 8 SER A 48 61.81 179.06 REMARK 500 9 ASN A 2 45.49 -95.89 REMARK 500 9 ALA A 4 34.26 -96.91 REMARK 500 9 ASP A 5 82.17 -157.58 REMARK 500 9 LEU A 6 48.46 -170.81 REMARK 500 9 SER A 7 155.37 -31.24 REMARK 500 9 ASP A 8 -58.08 -15.86 REMARK 500 9 ASN A 19 42.32 82.96 REMARK 500 9 PRO A 21 96.32 -57.53 REMARK 500 9 ILE A 37 2.44 -55.97 REMARK 500 9 GLN A 43 31.88 -98.02 REMARK 500 9 ARG A 44 -153.34 66.19 REMARK 500 9 ARG A 45 -71.22 -172.30 REMARK 500 9 ARG A 46 -73.77 -93.82 REMARK 500 9 SER A 48 66.75 166.51 REMARK 500 9 PRO A 50 -70.88 -76.33 REMARK 500 9 SER A 51 32.08 -142.65 REMARK 500 9 SER A 52 -93.24 -141.41 REMARK 500 10 ASN A 2 31.01 -89.48 REMARK 500 10 LEU A 6 56.44 175.09 REMARK 500 10 SER A 7 170.61 -40.13 REMARK 500 10 ASP A 8 -51.33 -29.83 REMARK 500 10 ASN A 19 44.28 84.15 REMARK 500 10 PRO A 21 89.70 -54.91 REMARK 500 10 SER A 28 -50.29 160.55 REMARK 500 10 ILE A 37 2.41 -56.88 REMARK 500 10 GLN A 43 -67.23 -99.89 REMARK 500 10 ARG A 45 -61.29 -174.76 REMARK 500 10 SER A 48 79.81 171.27 REMARK 500 10 SER A 51 -91.62 -114.52 REMARK 500 10 SER A 52 -65.65 -141.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 16 0.28 SIDE_CHAIN REMARK 500 1 ARG A 17 0.27 SIDE_CHAIN REMARK 500 1 ARG A 30 0.16 SIDE_CHAIN REMARK 500 1 ARG A 31 0.10 SIDE_CHAIN REMARK 500 1 ARG A 44 0.30 SIDE_CHAIN REMARK 500 1 ARG A 45 0.28 SIDE_CHAIN REMARK 500 1 ARG A 46 0.31 SIDE_CHAIN REMARK 500 2 ARG A 16 0.10 SIDE_CHAIN REMARK 500 2 ARG A 17 0.27 SIDE_CHAIN REMARK 500 2 ARG A 30 0.10 SIDE_CHAIN REMARK 500 2 ARG A 31 0.27 SIDE_CHAIN REMARK 500 2 ARG A 44 0.18 SIDE_CHAIN REMARK 500 2 ARG A 45 0.31 SIDE_CHAIN REMARK 500 2 ARG A 46 0.24 SIDE_CHAIN REMARK 500 3 ARG A 16 0.25 SIDE_CHAIN REMARK 500 3 ARG A 17 0.20 SIDE_CHAIN REMARK 500 3 ARG A 30 0.25 SIDE_CHAIN REMARK 500 3 ARG A 31 0.32 SIDE_CHAIN REMARK 500 3 ARG A 44 0.31 SIDE_CHAIN REMARK 500 3 ARG A 45 0.26 SIDE_CHAIN REMARK 500 3 ARG A 46 0.23 SIDE_CHAIN REMARK 500 4 ARG A 16 0.14 SIDE_CHAIN REMARK 500 4 ARG A 17 0.31 SIDE_CHAIN REMARK 500 4 ARG A 30 0.31 SIDE_CHAIN REMARK 500 4 ARG A 31 0.21 SIDE_CHAIN REMARK 500 4 ARG A 44 0.15 SIDE_CHAIN REMARK 500 4 ARG A 45 0.26 SIDE_CHAIN REMARK 500 4 ARG A 46 0.22 SIDE_CHAIN REMARK 500 5 ARG A 16 0.31 SIDE_CHAIN REMARK 500 5 ARG A 17 0.16 SIDE_CHAIN REMARK 500 5 ARG A 30 0.20 SIDE_CHAIN REMARK 500 5 ARG A 31 0.28 SIDE_CHAIN REMARK 500 5 ARG A 44 0.11 SIDE_CHAIN REMARK 500 5 ARG A 45 0.20 SIDE_CHAIN REMARK 500 5 ARG A 46 0.24 SIDE_CHAIN REMARK 500 6 ARG A 16 0.28 SIDE_CHAIN REMARK 500 6 ARG A 17 0.31 SIDE_CHAIN REMARK 500 6 ARG A 30 0.32 SIDE_CHAIN REMARK 500 6 ARG A 31 0.28 SIDE_CHAIN REMARK 500 6 ARG A 44 0.29 SIDE_CHAIN REMARK 500 6 ARG A 45 0.31 SIDE_CHAIN REMARK 500 6 ARG A 46 0.30 SIDE_CHAIN REMARK 500 7 ARG A 16 0.31 SIDE_CHAIN REMARK 500 7 ARG A 17 0.21 SIDE_CHAIN REMARK 500 7 ARG A 30 0.26 SIDE_CHAIN REMARK 500 7 ARG A 31 0.29 SIDE_CHAIN REMARK 500 7 ARG A 44 0.22 SIDE_CHAIN REMARK 500 7 ARG A 46 0.32 SIDE_CHAIN REMARK 500 8 ARG A 16 0.32 SIDE_CHAIN REMARK 500 8 ARG A 17 0.15 SIDE_CHAIN REMARK 500 8 ARG A 30 0.32 SIDE_CHAIN REMARK 500 8 ARG A 31 0.23 SIDE_CHAIN REMARK 500 8 ARG A 44 0.29 SIDE_CHAIN REMARK 500 9 ARG A 16 0.27 SIDE_CHAIN REMARK 500 9 ARG A 17 0.19 SIDE_CHAIN REMARK 500 9 ARG A 30 0.26 SIDE_CHAIN REMARK 500 9 ARG A 31 0.22 SIDE_CHAIN REMARK 500 9 ARG A 44 0.15 SIDE_CHAIN REMARK 500 9 ARG A 45 0.10 SIDE_CHAIN REMARK 500 9 ARG A 46 0.09 SIDE_CHAIN REMARK 500 10 ARG A 16 0.29 SIDE_CHAIN REMARK 500 10 ARG A 17 0.10 SIDE_CHAIN REMARK 500 10 ARG A 30 0.31 SIDE_CHAIN REMARK 500 10 ARG A 31 0.10 SIDE_CHAIN REMARK 500 10 ARG A 44 0.08 SIDE_CHAIN REMARK 500 10 ARG A 45 0.29 SIDE_CHAIN REMARK 500 10 ARG A 46 0.12 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1H9E RELATED DB: PDB REMARK 900 1H9E CONTAINS LEM-LIKE DOMAIN OF HUMAN INNER NUCLEAR REMARK 900 MEMBRANE PROTEIN LAP2 REMARK 900 RELATED ID: 1H9F RELATED DB: PDB REMARK 900 1H9F CONTAINS LEM DOMAIN OF HUMAN INNER NUCLEAR MEMBRANE REMARK 900 PROTEIN LAP2
DBREF 1JEI A 1 53 UNP P50402 EMD_HUMAN 2 54
SEQRES 1 A 53 ASP ASN TYR ALA ASP LEU SER ASP THR GLU LEU THR THR SEQRES 2 A 53 LEU LEU ARG ARG TYR ASN ILE PRO HIS GLY PRO VAL VAL SEQRES 3 A 53 GLY SER THR ARG ARG LEU TYR GLU LYS LYS ILE PHE GLU SEQRES 4 A 53 TYR GLU THR GLN ARG ARG ARG LEU SER PRO PRO SER SER SEQRES 5 A 53 SER
HELIX 1 1 SER A 7 ARG A 16 1 10 HELIX 2 2 GLY A 27 THR A 29 5 3 HELIX 3 3 ARG A 30 ILE A 37 1 8 HELIX 4 4 PHE A 38 THR A 42 5 5
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000