1JAV - Header Asymmetric Unit

HEADER VIRAL PROTEIN 31-MAY-01 1JAV

TITLE AVERAGE NMR SOLUTION STRUCTURE OF THE TRP-RICH PEPTIDE OF TITLE 2 HIV GP41 BOUND TO DPC MICELLES

COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSMEMBRANE GLYCOPROTEIN (GP41); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 665-683; COMPND 5 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED. SOURCE 4 THE SEQUENCE OF THE PEPTIDE IS NATURALLY FOUND IN HUMAN SOURCE 5 IMMUNODEFICIENCY VIRUS (HIV).

KEYWDS AMPHIPATHIC ALPHA HELIX, VIRAL PROTEIN

EXPDTA SOLUTION NMR

AUTHOR D.J.SCHIBLI,R.C.MONTELARO,H.J.VOGEL

REVDAT 2 24-FEB-09 1JAV 1 VERSN REVDAT 1 17-OCT-01 1JAV 0

JRNL AUTH D.J.SCHIBLI,R.C.MONTELARO,H.J.VOGEL JRNL TITL THE MEMBRANE-PROXIMAL TRYPTOPHAN-RICH REGION OF JRNL TITL 2 THE HIV GLYCOPROTEIN, GP41, FORMS A WELL-DEFINED JRNL TITL 3 HELIX IN DODECYLPHOSPHOCHOLINE MICELLES. JRNL REF BIOCHEMISTRY V. 40 9570 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11583156 JRNL DOI 10.1021/BI010640U

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : A.T.BRUNGER, P.D.ADAMS, G.M.CLORE, W.L.DELANO, REMARK 3 P.GROS, R.W.GROSSE-KUNSTLEVE, J.-S.JIANG, REMARK 3 J.KUSZEWSKI, M.NILGES, N.S.PANNU, R.J.READ, REMARK 3 L.M.RICE, T.SIMONSON, G.L.WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES WERE INITIALLY GENERATED REMARK 3 USING CNS. AMBIGUOUS AND UNASSIGNED NOE CONSTRAINTS WERE THEN REMARK 3 USED IN CONJUCTION WITH MATRIX RELAXATION ANALYSIS USING THE REMARK 3 PROGRAM ARIA.

REMARK 4 REMARK 4 1JAV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-01. REMARK 100 THE RCSB ID CODE IS RCSB013567.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 3.51 REMARK 210 IONIC STRENGTH : 200 MM DPC-D38 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.6 MM SYNTHETIC GP41 REMARK 210 PEPTIDE, 200 MM PERDEUTERATED REMARK 210 DODECYLPHOSPHOCHOLINE; 1.6 MM REMARK 210 SYNTHETIC GP41 PEPTIDE, 200 MM REMARK 210 PERDEUTERATED REMARK 210 DODECYLPHOSPHOCHOLINE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, DQF-COSY, 2D TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE, INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER, VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE 1.8, REMARK 210 NMRVIEW 4.1.3, CNS 1.0, ARIA REMARK 210 1.0 REMARK 210 METHOD USED : DISTANCE GEOMETRY, REMARK 210 SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS, MATRIX RELAXATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES.

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 2 4.98 -69.61 REMARK 500 ALA A 3 5.45 -68.08 REMARK 500 REMARK 500 REMARK: NULL

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 A 20

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JAU RELATED DB: PDB REMARK 900 ENSEMBLE OF 40 NMR DERIVED STRUCTURES FOR THIS DEPOSITION

DBREF 1JAV A 1 19 UNP P04624 ENV_HV1H3 665 683

SEQRES 1 A 20 LYS TRP ALA SER LEU TRP ASN TRP PHE ASN ILE THR ASN SEQRES 2 A 20 TRP LEU TRP TYR ILE LYS NH2

HET NH2 A 20 3

HETNAM NH2 AMINO GROUP

FORMUL 1 NH2 H2 N

HELIX 1 1 LYS A 1 SER A 4 5 4 HELIX 2 2 LEU A 5 ASN A 10 1 6 HELIX 3 3 ASN A 10 LYS A 19 1 10

LINK C LYS A 19 N NH2 A 20 1555 1555 1.33

SITE 1 AC1 2 ILE A 18 LYS A 19

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000