10 20 30 40 50 60 70 80 1JAS - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LIGASE 31-MAY-01 1JAS
TITLE HSUBC2B
COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2-17 KDA; COMPND 3 CHAIN: A; COMPND 4 EC: 6.3.2.19; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS NMR STRUCTURE, UBIQUITIN CONJUGATION, UBIQUITIN CONJUGATING KEYWDS 2 ENZYME, LIGASE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.MIURA,W.KLAUS,A.ROSS,P.GUENTERT,H.SENN
REVDAT 2 24-FEB-09 1JAS 1 VERSN REVDAT 1 09-SEP-03 1JAS 0
JRNL AUTH T.MIURA,W.KLAUS,A.ROSS,P.GUENTERT,H.SENN JRNL TITL THE NMR STRUCTURE OF THE CLASS I HUMAN JRNL TITL 2 UBIQUITIN-CONJUGATING ENZYME 2B JRNL REF J.BIOMOL.NMR V. 22 89 2002 JRNL REFN ISSN 0925-2738 JRNL PMID 11885984 JRNL DOI 10.1023/A:1013807519703
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.65 REMARK 3 AUTHORS : P. GUENTERT ET AL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CANDID: AUTOMATED NOE CROSS PEAK REMARK 3 ASSIGNMENT
REMARK 4 REMARK 4 1JAS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUN-01. REMARK 100 THE RCSB ID CODE IS RCSB013564.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : UL-13C, UL-15N; 75 MM REMARK 210 AMMONIUM ACETATE (DEUT.), 100 REMARK 210 MM AMMONIUM SULPHATE, PH 6.7; REMARK 210 UL-13C, 75 MM AMMONIUM ACETATE REMARK 210 (DEUT.), 100 MM AMMONIUM REMARK 210 SULPHATE, PH 6.7 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 3D_15N-SEPARATED_ REMARK 210 NOESY, 3D_13C-SEPARATED_NOESY, REMARK 210 4D_13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE 1.7, REMARK 210 DYANA 1.65 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 6 VAL A 56 CG1 - CB - CG2 ANGL. DEV. = -9.6 DEGREES REMARK 500 6 ARG A 135 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 9 TYR A 63 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 11 TYR A 63 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 14 TYR A 63 CB - CG - CD2 ANGL. DEV. = 3.8 DEGREES REMARK 500 14 TYR A 63 CB - CG - CD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 19 ARG A 7 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 20 ARG A 11 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 20 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 29 170.59 -55.36 REMARK 500 1 GLN A 93 -145.30 -122.55 REMARK 500 1 GLU A 132 -90.09 -81.79 REMARK 500 1 ASN A 133 68.33 -101.60 REMARK 500 2 SER A 2 -68.81 -152.63 REMARK 500 2 GLU A 62 39.37 -74.13 REMARK 500 2 GLN A 93 -103.04 -123.68 REMARK 500 2 THR A 99 -40.07 -145.85 REMARK 500 2 GLU A 132 -89.94 -82.58 REMARK 500 2 ASN A 133 68.84 -107.22 REMARK 500 3 PRO A 79 1.38 -68.76 REMARK 500 3 GLN A 93 -148.98 -103.09 REMARK 500 3 PRO A 98 38.85 -71.71 REMARK 500 3 PRO A 121 48.27 -89.55 REMARK 500 3 GLU A 132 -74.04 -77.23 REMARK 500 3 ASN A 133 72.65 -111.38 REMARK 500 4 GLN A 93 -154.80 -96.13 REMARK 500 4 THR A 99 -27.09 -143.33 REMARK 500 4 GLU A 132 -89.27 -96.53 REMARK 500 5 SER A 2 29.85 -151.87 REMARK 500 5 GLU A 62 31.72 -80.77 REMARK 500 5 GLN A 93 -156.09 -111.78 REMARK 500 5 GLU A 132 -72.66 -78.39 REMARK 500 5 ASN A 133 68.94 -111.28 REMARK 500 6 GLN A 93 -120.23 -114.32 REMARK 500 6 THR A 99 -34.29 -136.94 REMARK 500 6 GLU A 132 -83.72 -96.49 REMARK 500 6 ASN A 133 77.03 -110.05 REMARK 500 7 GLU A 62 62.10 -106.70 REMARK 500 7 PRO A 64 22.48 -78.35 REMARK 500 7 GLN A 93 -106.85 -117.97 REMARK 500 7 PRO A 98 78.56 -69.94 REMARK 500 7 THR A 99 -45.89 -152.30 REMARK 500 7 GLU A 132 -73.57 -71.01 REMARK 500 7 ASN A 133 68.02 -109.76 REMARK 500 8 GLN A 93 -137.37 -107.02 REMARK 500 8 GLU A 132 -84.80 -88.48 REMARK 500 9 GLN A 93 -143.55 -113.17 REMARK 500 9 THR A 99 -30.86 -138.08 REMARK 500 9 GLU A 132 -79.61 -77.53 REMARK 500 9 ASN A 133 68.78 -110.55 REMARK 500 9 TRP A 149 23.13 -73.88 REMARK 500 10 GLN A 93 -146.93 -102.59 REMARK 500 10 GLU A 132 -96.46 -82.84 REMARK 500 11 GLN A 93 -150.54 -114.95 REMARK 500 11 THR A 99 -59.92 -128.39 REMARK 500 11 GLU A 132 -77.31 -81.63 REMARK 500 11 ASN A 133 78.40 -109.62 REMARK 500 12 GLN A 93 -137.85 -109.21 REMARK 500 12 THR A 99 -44.25 -139.06 REMARK 500 12 GLU A 132 -96.28 -89.66 REMARK 500 12 TRP A 149 13.64 -68.92 REMARK 500 13 GLN A 93 -147.05 -100.38 REMARK 500 13 PRO A 98 26.62 -65.17 REMARK 500 13 GLU A 132 -76.02 -76.48 REMARK 500 13 ASN A 133 68.75 -109.58 REMARK 500 14 GLN A 93 -123.00 -106.59 REMARK 500 14 GLU A 132 -75.81 -70.23 REMARK 500 14 ASN A 133 67.84 -109.88 REMARK 500 15 GLU A 62 32.04 -83.27 REMARK 500 15 GLN A 93 -93.75 -112.60 REMARK 500 15 ARG A 95 23.70 -75.10 REMARK 500 15 GLU A 132 -79.19 -84.00 REMARK 500 15 ASN A 133 69.29 -110.27 REMARK 500 16 ILE A 33 -19.46 -141.06 REMARK 500 16 GLU A 62 32.67 -74.81 REMARK 500 16 GLN A 93 -99.46 -96.34 REMARK 500 16 THR A 99 -42.64 -152.25 REMARK 500 16 GLU A 132 -84.76 -67.68 REMARK 500 16 ASN A 133 68.12 -108.20 REMARK 500 17 GLN A 93 -153.16 -108.55 REMARK 500 17 PRO A 98 41.47 -78.65 REMARK 500 17 GLU A 132 -88.69 -99.35 REMARK 500 18 SER A 2 -81.39 -162.36 REMARK 500 18 ILE A 33 -8.80 -142.11 REMARK 500 18 GLN A 93 -89.52 -118.73 REMARK 500 18 PRO A 118 5.07 -68.97 REMARK 500 18 GLU A 132 -82.57 -79.25 REMARK 500 18 ASP A 151 99.70 -67.40 REMARK 500 19 GLN A 93 -108.34 -89.29 REMARK 500 19 PRO A 98 4.67 -69.51 REMARK 500 19 GLU A 132 -73.64 -70.59 REMARK 500 19 ASN A 133 70.09 -110.45 REMARK 500 20 ASN A 94 4.67 -69.50 REMARK 500 20 GLU A 132 -92.14 -82.35 REMARK 500 20 ASN A 133 67.81 -106.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 87 CYS A 88 6 149.52 REMARK 500 PRO A 68 THR A 69 17 146.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 8 0.09 SIDE_CHAIN REMARK 500 1 TYR A 63 0.07 SIDE_CHAIN REMARK 500 1 ARG A 140 0.08 SIDE_CHAIN REMARK 500 2 ARG A 7 0.09 SIDE_CHAIN REMARK 500 3 ARG A 71 0.10 SIDE_CHAIN REMARK 500 5 ARG A 6 0.09 SIDE_CHAIN REMARK 500 5 ARG A 71 0.11 SIDE_CHAIN REMARK 500 6 TYR A 130 0.07 SIDE_CHAIN REMARK 500 7 TYR A 100 0.08 SIDE_CHAIN REMARK 500 7 ARG A 140 0.08 SIDE_CHAIN REMARK 500 8 ARG A 135 0.11 SIDE_CHAIN REMARK 500 9 ARG A 6 0.09 SIDE_CHAIN REMARK 500 9 ARG A 8 0.08 SIDE_CHAIN REMARK 500 11 ARG A 140 0.09 SIDE_CHAIN REMARK 500 12 ARG A 71 0.09 SIDE_CHAIN REMARK 500 12 ARG A 135 0.09 SIDE_CHAIN REMARK 500 15 ARG A 15 0.08 SIDE_CHAIN REMARK 500 15 TYR A 63 0.08 SIDE_CHAIN REMARK 500 15 TYR A 82 0.07 SIDE_CHAIN REMARK 500 16 ARG A 11 0.09 SIDE_CHAIN REMARK 500 16 TYR A 137 0.08 SIDE_CHAIN REMARK 500 17 ARG A 140 0.12 SIDE_CHAIN REMARK 500 18 TYR A 82 0.07 SIDE_CHAIN REMARK 500 18 ARG A 140 0.08 SIDE_CHAIN REMARK 500 19 ARG A 7 0.08 SIDE_CHAIN REMARK 500 20 TYR A 130 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1JAS A 1 152 UNP P63146 UBE2B_HUMAN 1 152
SEQRES 1 A 152 MET SER THR PRO ALA ARG ARG ARG LEU MET ARG ASP PHE SEQRES 2 A 152 LYS ARG LEU GLN GLU ASP PRO PRO VAL GLY VAL SER GLY SEQRES 3 A 152 ALA PRO SER GLU ASN ASN ILE MET GLN TRP ASN ALA VAL SEQRES 4 A 152 ILE PHE GLY PRO GLU GLY THR PRO PHE GLU ASP GLY THR SEQRES 5 A 152 PHE LYS LEU VAL ILE GLU PHE SER GLU GLU TYR PRO ASN SEQRES 6 A 152 LYS PRO PRO THR VAL ARG PHE LEU SER LYS MET PHE HIS SEQRES 7 A 152 PRO ASN VAL TYR ALA ASP GLY SER ILE CYS LEU ASP ILE SEQRES 8 A 152 LEU GLN ASN ARG TRP SER PRO THR TYR ASP VAL SER SER SEQRES 9 A 152 ILE LEU THR SER ILE GLN SER LEU LEU ASP GLU PRO ASN SEQRES 10 A 152 PRO ASN SER PRO ALA ASN SER GLN ALA ALA GLN LEU TYR SEQRES 11 A 152 GLN GLU ASN LYS ARG GLU TYR GLU LYS ARG VAL SER ALA SEQRES 12 A 152 ILE VAL GLU GLN SER TRP ASN ASP SER
HELIX 1 1 THR A 3 ASP A 19 1 17 HELIX 2 2 LEU A 89 GLN A 93 5 5 HELIX 3 3 ASP A 101 GLU A 115 1 15 HELIX 4 4 ASN A 123 GLU A 132 1 10 HELIX 5 5 ASN A 133 GLN A 147 1 15 HELIX 6 6 SER A 148 ASP A 151 5 4
SHEET 1 A 4 VAL A 24 PRO A 28 0 SHEET 2 A 4 GLN A 35 PHE A 41 -1 N ASN A 37 O ALA A 27 SHEET 3 A 4 THR A 52 GLU A 58 -1 N PHE A 53 O ILE A 40 SHEET 4 A 4 THR A 69 PHE A 72 -1 O THR A 69 N GLU A 58
CISPEP 1 TYR A 63 PRO A 64 1 -12.57 CISPEP 2 TYR A 63 PRO A 64 2 -14.18 CISPEP 3 TYR A 63 PRO A 64 3 2.62 CISPEP 4 TYR A 63 PRO A 64 4 -3.75 CISPEP 5 TYR A 63 PRO A 64 5 -11.75 CISPEP 6 TYR A 63 PRO A 64 6 -12.59 CISPEP 7 TYR A 63 PRO A 64 7 -7.17 CISPEP 8 TYR A 63 PRO A 64 8 0.06 CISPEP 9 TYR A 63 PRO A 64 9 1.87 CISPEP 10 TYR A 63 PRO A 64 10 -10.55 CISPEP 11 TYR A 63 PRO A 64 11 -6.39 CISPEP 12 TYR A 63 PRO A 64 12 1.32 CISPEP 13 TYR A 63 PRO A 64 13 -13.91 CISPEP 14 TYR A 63 PRO A 64 14 -3.61 CISPEP 15 TYR A 63 PRO A 64 15 -7.36 CISPEP 16 TYR A 63 PRO A 64 16 -5.47 CISPEP 17 TYR A 63 PRO A 64 17 -2.02 CISPEP 18 TYR A 63 PRO A 64 18 -4.55 CISPEP 19 TYR A 63 PRO A 64 19 1.16 CISPEP 20 TYR A 63 PRO A 64 20 -8.01
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000