10 20 30 40 50 60 70 80 1J7R - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL BINDING PROTEIN 18-MAY-01 1J7R
TITLE SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF THE DEFUNCT EF- TITLE 2 HAND DOMAIN OF CALCIUM VECTOR PROTEIN
CAVEAT 1J7R CHIRALITY ERROR AT CB CENTER OF THR 76.
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALCIUM VECTOR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN (RESIDUES 1-86); COMPND 5 SYNONYM: CAVP; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRANCHIOSTOMA LANCEOLATUM; SOURCE 3 ORGANISM_COMMON: AMPHIOXUS; SOURCE 4 ORGANISM_TAXID: 7740; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24A
KEYWDS EF-HAND, CALCIUM BINDING PROTEIN, NMR, METAL BINDING PROTEIN
EXPDTA SOLUTION NMR
AUTHOR I.THERET,S.BALADI,J.A.COX,J.GALLAY,H.SAKAMOTO,C.T.CRAESCU
REVDAT 3 24-FEB-09 1J7R 1 VERSN REVDAT 2 28-DEC-01 1J7R 1 JRNL REVDAT 1 06-JUN-01 1J7R 0
JRNL AUTH I.THERET,S.BALADI,J.A.COX,J.GALLAY,H.SAKAMOTO, JRNL AUTH 2 C.T.CRAESCU JRNL TITL SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF THE JRNL TITL 2 DEFUNCT DOMAIN OF CALCIUM VECTOR PROTEIN. JRNL REF BIOCHEMISTRY V. 40 13888 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11705378 JRNL DOI 10.1021/BI011444Q
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVER REMARK 3 AUTHORS : MSI REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1J7R COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAY-01. REMARK 100 THE RCSB ID CODE IS RCSB013465.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 MM KCL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5 MM N-CAVP UNLABELED, 20 REMARK 210 MM DEUTERATED TRIS BUFFER, 100 REMARK 210 MM KCL; 1.5 MM N-CAVP REMARK 210 UNIFORMLY 15N LABELED, 20 MM REMARK 210 DEUTERATED TRIS BUFFER, 100 MM REMARK 210 KCL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 3D_15N-SEPARATED_ REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 97.0, DGII 97.0 REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: RESIDUES LISTED IN REMARK 465 ARE MISSING DUE TO LACK REMARK 210 OF NMR CONTSRAINTS.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 ALA A 2 REMARK 465 PRO A 3 REMARK 465 LYS A 4 REMARK 465 ALA A 5 REMARK 465 ARG A 6 REMARK 465 ALA A 7 REMARK 465 ASP A 85 REMARK 465 ASP A 86
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 74 CB - CG - CD2 ANGL. DEV. = -9.6 DEGREES REMARK 500 TRP A 74 CB - CG - CD1 ANGL. DEV. = -9.5 DEGREES REMARK 500 TRP A 74 NE1 - CE2 - CZ2 ANGL. DEV. = -8.9 DEGREES REMARK 500 TRP A 74 CG - CD2 - CE3 ANGL. DEV. = -12.9 DEGREES REMARK 500 TRP A 81 NE1 - CE2 - CZ2 ANGL. DEV. = -9.1 DEGREES REMARK 500 TRP A 81 CG - CD2 - CE3 ANGL. DEV. = -11.7 DEGREES REMARK 500 GLN A 84 N - CA - C ANGL. DEV. = -57.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 25 -57.80 87.69 REMARK 500 ASN A 26 -51.72 167.70 REMARK 500 ALA A 27 79.81 -153.03 REMARK 500 GLU A 28 -44.44 -133.72 REMARK 500 MET A 39 -74.08 -66.99 REMARK 500 LEU A 40 0.06 -68.84 REMARK 500 GLN A 45 -57.46 -178.03 REMARK 500 TYR A 47 -103.30 -111.40 REMARK 500 THR A 48 -96.27 -83.31 REMARK 500 LYS A 49 -68.04 -165.05 REMARK 500 ARG A 60 -87.29 -50.11 REMARK 500 LYS A 66 55.54 -144.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 20 0.26 SIDE_CHAIN REMARK 500 ARG A 25 0.20 SIDE_CHAIN REMARK 500 TYR A 47 0.10 SIDE_CHAIN REMARK 500 ARG A 50 0.12 SIDE_CHAIN REMARK 500 ARG A 60 0.21 SIDE_CHAIN REMARK 500 ARG A 83 0.15 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1J7R A 1 86 UNP P04573 CAVP_BRALA 1 86
SEQRES 1 A 86 ALA ALA PRO LYS ALA ARG ALA LEU GLY PRO GLU GLU LYS SEQRES 2 A 86 ASP GLU CYS MET LYS ILE PHE ASP ILE PHE ASP ARG ASN SEQRES 3 A 86 ALA GLU ASN ILE ALA PRO VAL SER ASP THR MET ASP MET SEQRES 4 A 86 LEU THR LYS LEU GLY GLN THR TYR THR LYS ARG GLU THR SEQRES 5 A 86 GLU ALA ILE MET LYS GLU ALA ARG GLY PRO LYS GLY ASP SEQRES 6 A 86 LYS LYS ASN ILE GLY PRO GLU GLU TRP LEU THR LEU CYS SEQRES 7 A 86 SER LYS TRP VAL ARG GLN ASP ASP
HELIX 1 1 LEU A 8 PRO A 10 5 3 HELIX 2 2 GLU A 11 PHE A 23 1 13 HELIX 3 3 PRO A 32 LEU A 43 1 12 HELIX 4 4 ARG A 50 ALA A 59 1 10 HELIX 5 5 GLU A 72 ARG A 83 1 12
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000