1J4Y - Header Asymmetric Unit

HEADER RNA 12-DEC-01 1J4Y

TITLE SOLUTION STRUCTURE OF THE UNMODIFIED ANTICODON STEM-LOOP TITLE 2 FROM E. COLI TRNA(PHE)

COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTICODON STEM-LOOP OF TRNA(PHE); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: T7 RNA POLYMERASE IN VITRO TRANSCRIPTION

KEYWDS RNA STEM-LOOP, TRINUCLEOTIDE LOOP, HAIRPIN

EXPDTA SOLUTION NMR

AUTHOR J.CABELLO-VILLEGAS,M.E.WINKLER,E.P.NIKONOWICZ

REVDAT 3 24-FEB-09 1J4Y 1 VERSN REVDAT 2 01-APR-03 1J4Y 1 JRNL REVDAT 1 17-JUL-02 1J4Y 0

JRNL AUTH J.CABELLO-VILLEGAS,M.E.WINKLER,E.P.NIKONOWICZ JRNL TITL SOLUTION CONFORMATIONS OF UNMODIFIED AND JRNL TITL 2 A(37)N(6)-DIMETHYLALLYL MODIFIED ANTICODON JRNL TITL 3 STEM-LOOPS OF ESCHERICHIA COLI TRNA(PHE). JRNL REF J.MOL.BIOL. V. 319 1015 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 12079344 JRNL DOI 10.1016/S0022-2836(02)00382-0

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.861 REMARK 3 AUTHORS : BRUNGER, A. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 294 NOE DISTANCE CONSTRAINTS, 36 REMARK 3 BASE PAIR CONSTRAINTS, 70 TORSION ANGLE CONSTRAINTS. GLOBAL REMARK 3 FOLD WITHOUT TORSION ANGLE CONSTRAINTS. REFINEMENT WITH REMARK 3 TORSION ANGLE CONSTRAINTS.

REMARK 4 REMARK 4 1J4Y COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-DEC-01. REMARK 100 THE RCSB ID CODE IS RCSB001618.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 288 REMARK 210 PH : 6.8; 6.8 REMARK 210 IONIC STRENGTH : 10 MM KPI, 10MM NACL; 10 MM REMARK 210 KPI, 10MM NACL REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 2MM ACSL-PHE, 15N, 13C REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY, DQF-COSY, REMARK 210 HNN-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 98, X-PLOR 3.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING 1H, 13C, 15N AND 31P REMARK 210 HETERONUCLEAR NMR SPECTROSCOPY.

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 G A 3 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 G A 3 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 G A 4 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 G A 4 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 A A 5 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 G A 8 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 G A 8 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 A A 9 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 A A 10 N7 - C8 - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 A A 11 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 A A 12 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KKA RELATED DB: PDB REMARK 900 1KKA CONTAINS THE ENSEMBLE

DBREF 1J4Y A 1 17 PDB 1J4Y 1J4Y 1 17

SEQRES 1 A 17 G G G G A U U G A A A A U SEQRES 2 A 17 C C C C

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000