10 20 30 40 50 60 70 80 1J4U - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PLANT PROTEIN 30-OCT-01 1J4U
TITLE STRUCTURE OF ARTOCARPIN COMPLEXED WITH ME-ALPHA-MANNOSE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARTOCARPIN; COMPND 3 CHAIN: A, B, C, D
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTOCARPUS INTEGER; SOURCE 3 ORGANISM_TAXID: 3490; SOURCE 4 OTHER_DETAILS: SEEDS
KEYWDS ALL BETA, GREEK KEY MOTIF, BETA PRISM I FOLD, PLANT PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR J.V.PRATAP,A.A.JEYAPRAKASH,P.G.RANI,K.SEKAR,A.SUROLIA, AUTHOR 2 M.VIJAYAN
REVDAT 2 24-FEB-09 1J4U 1 VERSN REVDAT 1 27-MAR-02 1J4U 0
JRNL AUTH J.V.PRATAP,A.A.JEYAPRAKASH,P.G.RANI,K.SEKAR, JRNL AUTH 2 A.SUROLIA,M.VIJAYAN JRNL TITL CRYSTAL STRUCTURES OF ARTOCARPIN, A MORACEAE JRNL TITL 2 LECTIN WITH MANNOSE SPECIFICITY, AND ITS COMPLEX JRNL TITL 3 WITH METHYL-ALPHA-D-MANNOSE: IMPLICATIONS TO THE JRNL TITL 4 GENERATION OF CARBOHYDRATE SPECIFICITY. JRNL REF J.MOL.BIOL. V. 317 237 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 11902840 JRNL DOI 10.1006/JMBI.2001.5432
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 15000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4532 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 128 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1J4U COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-NOV-01. REMARK 100 THE RCSB ID CODE IS RCSB001614.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 293.0 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15219 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.15700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.41600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PBS BUFFER, METHOXY PEG 350, 10MG/ REMARK 280 ML PROTEIN, PH 7.4, VAPOR DIFFUSION, TEMPERATURE 293.0K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.20333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.40667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.30500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.50833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.10167 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 LYS B 63 CG CD CE NZ REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 LYS C 63 CG CD CE NZ REMARK 470 LYS C 70 CG CD CE NZ REMARK 470 LYS D 63 CG CD CE NZ REMARK 470 LYS D 70 CG CD CE NZ
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 268 O HOH A 282 1.87 REMARK 500 OE2 GLU A 68 O HOH A 282 2.08 REMARK 500 O PHE B 109 O HOH B 306 2.10 REMARK 500 N PHE B 101 O HOH B 306 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O PRO A 92 OD1 ASN D 16 3665 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 2 CB - CA - C ANGL. DEV. = -14.3 DEGREES REMARK 500 SER A 2 N - CA - CB ANGL. DEV. = 28.8 DEGREES REMARK 500 SER A 2 O - C - N ANGL. DEV. = -36.4 DEGREES REMARK 500 SER A 9 N - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 SER B 2 CB - CA - C ANGL. DEV. = -14.6 DEGREES REMARK 500 SER B 2 N - CA - CB ANGL. DEV. = 10.4 DEGREES REMARK 500 SER B 2 O - C - N ANGL. DEV. = -12.9 DEGREES REMARK 500 SER B 9 N - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 LYS B 133 O - C - N ANGL. DEV. = -10.6 DEGREES REMARK 500 SER C 9 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 SER D 2 O - C - N ANGL. DEV. = -12.1 DEGREES REMARK 500 SER D 9 N - CA - C ANGL. DEV. = -17.2 DEGREES REMARK 500 LEU D 89 O - C - N ANGL. DEV. = -10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 9 77.29 111.27 REMARK 500 LYS A 34 -99.83 -164.83 REMARK 500 HIS A 56 67.07 -111.87 REMARK 500 LEU A 60 125.25 -37.34 REMARK 500 PRO A 61 70.22 -66.57 REMARK 500 SER A 87 -72.45 -73.33 REMARK 500 ALA A 90 83.16 -16.89 REMARK 500 LEU A 139 -164.98 -129.64 REMARK 500 SER B 9 76.87 111.00 REMARK 500 LYS B 34 -101.30 -165.64 REMARK 500 HIS B 56 65.86 -111.04 REMARK 500 PRO B 61 70.21 -68.28 REMARK 500 SER B 87 -72.15 -70.98 REMARK 500 ALA B 90 81.92 -17.95 REMARK 500 LEU B 139 -163.31 -128.08 REMARK 500 SER C 9 79.89 111.94 REMARK 500 LYS C 34 -98.04 -163.75 REMARK 500 HIS C 56 65.59 -112.45 REMARK 500 LEU C 60 125.67 -38.58 REMARK 500 PRO C 61 69.19 -67.44 REMARK 500 ALA C 90 82.76 -16.86 REMARK 500 SER D 9 78.19 111.04 REMARK 500 LYS D 34 -99.66 -163.94 REMARK 500 HIS D 56 68.28 -111.49 REMARK 500 LEU D 60 125.61 -38.74 REMARK 500 PRO D 61 69.01 -67.13 REMARK 500 SER D 87 -71.35 -72.87 REMARK 500 ALA D 90 103.15 -21.96 REMARK 500 LEU D 139 -162.30 -128.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 2 35.35 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 258 DISTANCE = 5.12 ANGSTROMS REMARK 525 HOH C 252 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH D 266 DISTANCE = 5.25 ANGSTROMS REMARK 525 HOH C 269 DISTANCE = 8.12 ANGSTROMS REMARK 525 HOH A 251 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH D 277 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A 254 DISTANCE = 5.69 ANGSTROMS REMARK 525 HOH B 302 DISTANCE = 5.64 ANGSTROMS REMARK 525 HOH A 289 DISTANCE = 5.12 ANGSTROMS REMARK 525 HOH A 327 DISTANCE = 8.24 ANGSTROMS REMARK 525 HOH A 328 DISTANCE = 7.78 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MMA A 401 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MMA B 402 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MMA C 403 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MMA D 404
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JAC RELATED DB: PDB REMARK 900 1JAC IS THE CRYSTAL STRUCTURE OF JACALIN WHOSE FOLD IS SAME REMARK 900 AS THAT OF ARTOCARPIN REMARK 900 RELATED ID: 1J4S RELATED DB: PDB REMARK 900 1J4S CONTAINS THE SAME PROTEIN (FORM 1) REMARK 900 RELATED ID: 1J4T RELATED DB: PDB REMARK 900 1J4T CONTAINS THE SAME PROTEIN (FORM 2)
DBREF 1J4U A 1 149 UNP Q7M1T4 Q7M1T4_ARTIN 1 149 DBREF 1J4U B 1 149 UNP Q7M1T4 Q7M1T4_ARTIN 1 149 DBREF 1J4U C 1 149 UNP Q7M1T4 Q7M1T4_ARTIN 1 149 DBREF 1J4U D 1 149 UNP Q7M1T4 Q7M1T4_ARTIN 1 149
SEQADV 1J4U AYA A 1 UNP Q7M1T4 ALA 1 MODIFIED RESIDUE SEQADV 1J4U SER A 9 UNP Q7M1T4 PRO 9 CONFLICT SEQADV 1J4U GLU A 20 UNP Q7M1T4 ASP 20 CONFLICT SEQADV 1J4U ASP A 49 UNP Q7M1T4 GLU 49 CONFLICT SEQADV 1J4U LYS A 70 UNP Q7M1T4 ARG 70 CONFLICT SEQADV 1J4U GLY A 84 UNP Q7M1T4 ALA 84 CONFLICT SEQADV 1J4U ILE A 145 UNP Q7M1T4 VAL 145 CONFLICT SEQADV 1J4U SER A 148 UNP Q7M1T4 ALA 148 CONFLICT SEQADV 1J4U AYA B 1 UNP Q7M1T4 ALA 1 MODIFIED RESIDUE SEQADV 1J4U SER B 9 UNP Q7M1T4 PRO 9 CONFLICT SEQADV 1J4U GLU B 20 UNP Q7M1T4 ASP 20 CONFLICT SEQADV 1J4U ASP B 49 UNP Q7M1T4 GLU 49 CONFLICT SEQADV 1J4U LYS B 70 UNP Q7M1T4 ARG 70 CONFLICT SEQADV 1J4U GLY B 84 UNP Q7M1T4 ALA 84 CONFLICT SEQADV 1J4U ILE B 145 UNP Q7M1T4 VAL 145 CONFLICT SEQADV 1J4U SER B 148 UNP Q7M1T4 ALA 148 CONFLICT SEQADV 1J4U AYA C 1 UNP Q7M1T4 ALA 1 MODIFIED RESIDUE SEQADV 1J4U SER C 9 UNP Q7M1T4 PRO 9 CONFLICT SEQADV 1J4U GLU C 20 UNP Q7M1T4 ASP 20 CONFLICT SEQADV 1J4U ASP C 49 UNP Q7M1T4 GLU 49 CONFLICT SEQADV 1J4U LYS C 70 UNP Q7M1T4 ARG 70 CONFLICT SEQADV 1J4U GLY C 84 UNP Q7M1T4 ALA 84 CONFLICT SEQADV 1J4U ILE C 145 UNP Q7M1T4 VAL 145 CONFLICT SEQADV 1J4U SER C 148 UNP Q7M1T4 ALA 148 CONFLICT SEQADV 1J4U AYA D 1 UNP Q7M1T4 ALA 1 MODIFIED RESIDUE SEQADV 1J4U SER D 9 UNP Q7M1T4 PRO 9 CONFLICT SEQADV 1J4U GLU D 20 UNP Q7M1T4 ASP 20 CONFLICT SEQADV 1J4U ASP D 49 UNP Q7M1T4 GLU 49 CONFLICT SEQADV 1J4U LYS D 70 UNP Q7M1T4 ARG 70 CONFLICT SEQADV 1J4U GLY D 84 UNP Q7M1T4 ALA 84 CONFLICT SEQADV 1J4U ILE D 145 UNP Q7M1T4 VAL 145 CONFLICT SEQADV 1J4U SER D 148 UNP Q7M1T4 ALA 148 CONFLICT
SEQRES 1 A 149 AYA SER GLN THR ILE THR VAL GLY SER TRP GLY GLY PRO SEQRES 2 A 149 GLY GLY ASN GLY TRP ASP GLU GLY SER TYR THR GLY ILE SEQRES 3 A 149 ARG GLN ILE GLU LEU SER TYR LYS GLU ALA ILE GLY SER SEQRES 4 A 149 PHE SER VAL ILE TYR ASP LEU ASN GLY ASP PRO PHE SER SEQRES 5 A 149 GLY PRO LYS HIS THR SER LYS LEU PRO TYR LYS ASN VAL SEQRES 6 A 149 LYS ILE GLU LEU LYS PHE PRO ASP GLU PHE LEU GLU SER SEQRES 7 A 149 VAL SER GLY TYR THR GLY PRO PHE SER ALA LEU ALA THR SEQRES 8 A 149 PRO THR PRO VAL VAL ARG SER LEU THR PHE LYS THR ASN SEQRES 9 A 149 LYS GLY ARG THR PHE GLY PRO TYR GLY ASP GLU GLU GLY SEQRES 10 A 149 THR TYR PHE ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL SEQRES 11 A 149 GLY PHE LYS GLY ARG THR GLY ASP LEU LEU ASP ALA ILE SEQRES 12 A 149 GLY ILE HIS MET SER LEU SEQRES 1 B 149 AYA SER GLN THR ILE THR VAL GLY SER TRP GLY GLY PRO SEQRES 2 B 149 GLY GLY ASN GLY TRP ASP GLU GLY SER TYR THR GLY ILE SEQRES 3 B 149 ARG GLN ILE GLU LEU SER TYR LYS GLU ALA ILE GLY SER SEQRES 4 B 149 PHE SER VAL ILE TYR ASP LEU ASN GLY ASP PRO PHE SER SEQRES 5 B 149 GLY PRO LYS HIS THR SER LYS LEU PRO TYR LYS ASN VAL SEQRES 6 B 149 LYS ILE GLU LEU LYS PHE PRO ASP GLU PHE LEU GLU SER SEQRES 7 B 149 VAL SER GLY TYR THR GLY PRO PHE SER ALA LEU ALA THR SEQRES 8 B 149 PRO THR PRO VAL VAL ARG SER LEU THR PHE LYS THR ASN SEQRES 9 B 149 LYS GLY ARG THR PHE GLY PRO TYR GLY ASP GLU GLU GLY SEQRES 10 B 149 THR TYR PHE ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL SEQRES 11 B 149 GLY PHE LYS GLY ARG THR GLY ASP LEU LEU ASP ALA ILE SEQRES 12 B 149 GLY ILE HIS MET SER LEU SEQRES 1 C 149 AYA SER GLN THR ILE THR VAL GLY SER TRP GLY GLY PRO SEQRES 2 C 149 GLY GLY ASN GLY TRP ASP GLU GLY SER TYR THR GLY ILE SEQRES 3 C 149 ARG GLN ILE GLU LEU SER TYR LYS GLU ALA ILE GLY SER SEQRES 4 C 149 PHE SER VAL ILE TYR ASP LEU ASN GLY ASP PRO PHE SER SEQRES 5 C 149 GLY PRO LYS HIS THR SER LYS LEU PRO TYR LYS ASN VAL SEQRES 6 C 149 LYS ILE GLU LEU LYS PHE PRO ASP GLU PHE LEU GLU SER SEQRES 7 C 149 VAL SER GLY TYR THR GLY PRO PHE SER ALA LEU ALA THR SEQRES 8 C 149 PRO THR PRO VAL VAL ARG SER LEU THR PHE LYS THR ASN SEQRES 9 C 149 LYS GLY ARG THR PHE GLY PRO TYR GLY ASP GLU GLU GLY SEQRES 10 C 149 THR TYR PHE ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL SEQRES 11 C 149 GLY PHE LYS GLY ARG THR GLY ASP LEU LEU ASP ALA ILE SEQRES 12 C 149 GLY ILE HIS MET SER LEU SEQRES 1 D 149 AYA SER GLN THR ILE THR VAL GLY SER TRP GLY GLY PRO SEQRES 2 D 149 GLY GLY ASN GLY TRP ASP GLU GLY SER TYR THR GLY ILE SEQRES 3 D 149 ARG GLN ILE GLU LEU SER TYR LYS GLU ALA ILE GLY SER SEQRES 4 D 149 PHE SER VAL ILE TYR ASP LEU ASN GLY ASP PRO PHE SER SEQRES 5 D 149 GLY PRO LYS HIS THR SER LYS LEU PRO TYR LYS ASN VAL SEQRES 6 D 149 LYS ILE GLU LEU LYS PHE PRO ASP GLU PHE LEU GLU SER SEQRES 7 D 149 VAL SER GLY TYR THR GLY PRO PHE SER ALA LEU ALA THR SEQRES 8 D 149 PRO THR PRO VAL VAL ARG SER LEU THR PHE LYS THR ASN SEQRES 9 D 149 LYS GLY ARG THR PHE GLY PRO TYR GLY ASP GLU GLU GLY SEQRES 10 D 149 THR TYR PHE ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL SEQRES 11 D 149 GLY PHE LYS GLY ARG THR GLY ASP LEU LEU ASP ALA ILE SEQRES 12 D 149 GLY ILE HIS MET SER LEU
MODRES 1J4U AYA A 1 ALA N-ACETYLALANINE MODRES 1J4U AYA B 1 ALA N-ACETYLALANINE MODRES 1J4U AYA C 1 ALA N-ACETYLALANINE MODRES 1J4U AYA D 1 ALA N-ACETYLALANINE
HET AYA A 1 8 HET AYA B 1 8 HET AYA C 1 8 HET AYA D 1 8 HET MMA A 401 13 HET MMA B 402 13 HET MMA C 403 13 HET MMA D 404 13
HETNAM AYA N-ACETYLALANINE HETNAM MMA O1-METHYL-MANNOSE
FORMUL 1 AYA 4(C5 H9 N O3) FORMUL 5 MMA 4(C7 H14 O6) FORMUL 9 HOH *128(H2 O)
SHEET 1 A 8 ASN A 16 ASP A 19 0 SHEET 2 A 8 LEU A 128 THR A 136 -1 O GLY A 134 N TRP A 18 SHEET 3 A 8 LEU A 140 SER A 148 -1 O GLY A 144 N LYS A 133 SHEET 4 A 8 ILE A 5 GLY A 11 -1 N VAL A 7 O ILE A 145 SHEET 5 A 8 THR B 118 ASN B 126 -1 O ASN B 126 N THR A 6 SHEET 6 A 8 LEU B 76 PRO B 85 -1 N VAL B 79 O LEU B 122 SHEET 7 A 8 PRO B 94 THR B 103 -1 O THR B 100 N SER B 80 SHEET 8 A 8 THR B 108 TYR B 112 -1 O TYR B 112 N LEU B 99 SHEET 1 B 4 ASP A 49 SER A 52 0 SHEET 2 B 4 ILE A 37 LEU A 46 -1 N LEU A 46 O ASP A 49 SHEET 3 B 4 GLY A 25 TYR A 33 -1 N GLN A 28 O ILE A 43 SHEET 4 B 4 LYS A 63 GLU A 68 -1 O ILE A 67 N ILE A 29 SHEET 1 C 8 THR A 108 TYR A 112 0 SHEET 2 C 8 PRO A 94 THR A 103 -1 N LEU A 99 O TYR A 112 SHEET 3 C 8 LEU A 76 PRO A 85 -1 N SER A 80 O THR A 100 SHEET 4 C 8 THR A 118 ASN A 126 -1 O LEU A 122 N VAL A 79 SHEET 5 C 8 ILE B 5 GLY B 11 -1 O THR B 6 N ASN A 126 SHEET 6 C 8 LEU B 140 SER B 148 -1 O MET B 147 N ILE B 5 SHEET 7 C 8 LEU B 128 THR B 136 -1 N LYS B 133 O GLY B 144 SHEET 8 C 8 ASN B 16 ASP B 19 -1 N TRP B 18 O GLY B 134 SHEET 1 D 4 ASP B 49 SER B 52 0 SHEET 2 D 4 ILE B 37 LEU B 46 -1 N LEU B 46 O ASP B 49 SHEET 3 D 4 GLY B 25 TYR B 33 -1 N GLN B 28 O ILE B 43 SHEET 4 D 4 LYS B 63 GLU B 68 -1 O ILE B 67 N ILE B 29 SHEET 1 E 8 ASN C 16 ASP C 19 0 SHEET 2 E 8 LEU C 128 THR C 136 -1 O GLY C 134 N TRP C 18 SHEET 3 E 8 LEU C 140 SER C 148 -1 O GLY C 144 N LYS C 133 SHEET 4 E 8 ILE C 5 GLY C 11 -1 N VAL C 7 O ILE C 145 SHEET 5 E 8 THR D 118 ASN D 126 -1 O ASN D 126 N THR C 6 SHEET 6 E 8 LEU D 76 PRO D 85 -1 N VAL D 79 O LEU D 122 SHEET 7 E 8 PRO D 94 THR D 103 -1 O THR D 100 N SER D 80 SHEET 8 E 8 THR D 108 TYR D 112 -1 O TYR D 112 N LEU D 99 SHEET 1 F 4 ASP C 49 SER C 52 0 SHEET 2 F 4 ILE C 37 LEU C 46 -1 N TYR C 44 O PHE C 51 SHEET 3 F 4 GLY C 25 TYR C 33 -1 N GLN C 28 O ILE C 43 SHEET 4 F 4 LYS C 63 GLU C 68 -1 O ILE C 67 N ILE C 29 SHEET 1 G 8 THR C 108 TYR C 112 0 SHEET 2 G 8 PRO C 94 THR C 103 -1 N LEU C 99 O TYR C 112 SHEET 3 G 8 LEU C 76 PRO C 85 -1 N SER C 80 O THR C 100 SHEET 4 G 8 THR C 118 ASN C 126 -1 O LEU C 122 N VAL C 79 SHEET 5 G 8 ILE D 5 GLY D 11 -1 O THR D 6 N ASN C 126 SHEET 6 G 8 LEU D 140 SER D 148 -1 O ILE D 145 N VAL D 7 SHEET 7 G 8 LEU D 128 THR D 136 -1 N LYS D 133 O GLY D 144 SHEET 8 G 8 ASN D 16 ASP D 19 -1 N TRP D 18 O GLY D 134 SHEET 1 H 4 ASP D 49 SER D 52 0 SHEET 2 H 4 ILE D 37 LEU D 46 -1 N LEU D 46 O ASP D 49 SHEET 3 H 4 GLY D 25 TYR D 33 -1 N GLN D 28 O ILE D 43 SHEET 4 H 4 LYS D 63 GLU D 68 -1 O ILE D 67 N ILE D 29
LINK C AYA A 1 N SER A 2 1555 1555 1.43 LINK C AYA B 1 N SER B 2 1555 1555 1.45 LINK C AYA C 1 N SER C 2 1555 1555 1.49 LINK C AYA D 1 N SER D 2 1555 1555 1.45
CISPEP 1 PHE A 71 PRO A 72 0 0.29 CISPEP 2 PHE B 71 PRO B 72 0 0.08 CISPEP 3 PHE C 71 PRO C 72 0 0.48 CISPEP 4 PHE D 71 PRO D 72 0 -2.29
SITE 1 AC1 6 GLY A 14 GLY A 15 GLY A 137 ASP A 138 SITE 2 AC1 6 LEU A 139 ASP A 141 SITE 1 AC2 6 GLY B 14 GLY B 15 GLY B 137 ASP B 138 SITE 2 AC2 6 LEU B 139 ASP B 141 SITE 1 AC3 6 GLY C 14 GLY C 15 GLY C 137 ASP C 138 SITE 2 AC3 6 LEU C 139 ASP C 141 SITE 1 AC4 8 GLY A 117 GLY D 14 GLY D 15 THR D 91 SITE 2 AC4 8 GLY D 137 ASP D 138 LEU D 139 ASP D 141
CRYST1 129.200 129.200 78.610 90.00 90.00 120.00 P 61 24
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.007740 0.004469 0.000000 0.00000
SCALE2 0.000000 0.008937 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012721 0.00000