1J4Q - Header Asymmetric Unit

HEADER TRANSFERASE/CELL CYCLE 22-OCT-01 1J4Q

TITLE NMR STRUCTURE OF THE FHA1 DOMAIN OF RAD53 IN COMPLEX WITH A TITLE 2 RAD9-DERIVED PHOSPHOTHREONINE (AT T192) PEPTIDE

COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN KINASE SPK1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL FHA DOMAIN (FHA1); COMPND 5 EC: 2.7.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA REPAIR PROTEIN RAD9; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: RESIDUES 188-200; COMPND 11 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: SPK1 OR RAD53; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THIS PHOSPHOTHREONINE PEPTIDE WAS SOURCE 14 CHEMICALLY SYNTHESIZED.

KEYWDS FHA DOMAIN, RAD53, RAD9, PHOSPHOTHREONINE, PHOSPHOPROTEIN, KEYWDS 2 NMR, TRANSFERASE/CELL CYCLE COMPLEX

EXPDTA SOLUTION NMR

AUTHOR C.YUAN,S.YONGKIETTRAKUL,I.-J.L.BYEON,S.ZHOU,M.-D.TSAI

REVDAT 3 24-FEB-09 1J4Q 1 VERSN REVDAT 2 01-APR-03 1J4Q 1 JRNL REVDAT 1 05-DEC-01 1J4Q 0

JRNL AUTH C.YUAN,S.YONGKIETTRAKUL,I.J.BYEON,S.ZHOU,M.D.TSAI JRNL TITL SOLUTION STRUCTURES OF TWO FHA1-PHOSPHOTHREONINE JRNL TITL 2 PEPTIDE COMPLEXES PROVIDE INSIGHT INTO THE JRNL TITL 3 STRUCTURAL BASIS OF THE LIGAND SPECIFICITY OF FHA1 JRNL TITL 4 FROM YEAST RAD53. JRNL REF J.MOL.BIOL. V. 314 563 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11846567 JRNL DOI 10.1006/JMBI.2001.5140

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.LIAO,C.YUAN,M.I.SU,S.YONGKIETTRAKUL,D.QIN,H.LI, REMARK 1 AUTH 2 I.J.BYEON,D.PEI,M.D.TSAI REMARK 1 TITL STRUCTURE OF THE FHA1 DOMAIN OF YEAST RAD53 AND REMARK 1 TITL 2 IDENTIFICATION OF BINDING SITES FOR BOTH FHA1 AND REMARK 1 TITL 3 ITS TARGET PROTEIN RAD9. REMARK 1 REF J.MOL.BIOL. V. 304 941 2000 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.2000.4291

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1J4Q COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-OCT-01. REMARK 100 THE RCSB ID CODE IS RCSB001610.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293.00 REMARK 210 PH : 6.50 REMARK 210 IONIC STRENGTH : 10 MM SODIUM PHOSPHATE, 1 MM REMARK 210 DTT, AND 1 MM EDTA REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM FHA1 U-15N,13C 10 MM REMARK 210 SODIUM PHOSPHATE BUFFER (PH REMARK 210 6.5), 1 MM DTT, AND 1 MM EDTA; REMARK 210 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY, 2D_13C/ REMARK 210 15N-FILTERED_NOESY, 3D_13C - REMARK 210 EDITED_13C/15N-FILTERED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, CNS 1.0 REMARK 210 METHOD USED : THE COMPLEX STRUCTURE ARE REMARK 210 GENERATED USING A TOTAL OF REMARK 210 2474 RESTRAINTS. AMONG THEM, 3 REMARK 210 ARTIFICIAL CONSTRAINTS, 192 REMARK 210 TALOS- DERIVED DIHEDRAL ANGLE REMARK 210 RESTRAINTS, 78 H-BOND REMARK 210 RESTRAINTS, 22 INTERMOLECULAR REMARK 210 DISTANCE CONSTRAINS, AND 2179 REMARK 210 INTRA-FHA1 AND INTRA- PEPTIDE REMARK 210 DISTANCE CONSTRAINTS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE- RESONANCE REMARK 210 NMR SPECTROSCOPY

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE B 175 CD1 - CG - CD2 ANGL. DEV. = -49.5 DEGREES REMARK 500 PHE B 175 CB - CG - CD1 ANGL. DEV. = 11.8 DEGREES REMARK 500 PHE B 175 CG - CD1 - CE1 ANGL. DEV. = -66.3 DEGREES REMARK 500 PHE B 175 CG - CD2 - CE2 ANGL. DEV. = -46.9 DEGREES REMARK 500 PHE B 175 CD1 - CE1 - CZ ANGL. DEV. = -48.2 DEGREES REMARK 500 PHE B 175 CE1 - CZ - CE2 ANGL. DEV. = -50.3 DEGREES REMARK 500 PHE B 175 CZ - CE2 - CD2 ANGL. DEV. = -69.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 25 88.89 179.15 REMARK 500 ASN A 31 32.94 -177.19 REMARK 500 GLN A 42 -42.57 -145.38 REMARK 500 LYS A 59 46.54 -94.04 REMARK 500 ARG A 60 -169.98 -101.69 REMARK 500 LYS A 63 -78.44 -103.49 REMARK 500 ASN A 80 78.17 175.11 REMARK 500 GLU A 95 -76.25 66.30 REMARK 500 ASP A 96 -68.01 -158.38 REMARK 500 ILE A 104 38.69 -150.26 REMARK 500 ASN A 119 34.66 33.89 REMARK 500 ASP A 128 163.50 -48.71 REMARK 500 ASN A 158 -91.44 43.67 REMARK 500 ARG A 162 100.23 56.68 REMARK 500 LEU B 166 -173.76 44.33 REMARK 500 GLU B 167 39.79 -154.47 REMARK 500 THR B 174 48.40 -104.68 REMARK 500 VAL B 176 76.63 40.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE B 175 0.41 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL

DBREF 1J4Q A 14 164 UNP P22216 RAD53_YEAST 14 164 DBREF 1J4Q B 165 177 UNP P14737 RAD9_YEAST 188 200

SEQADV 1J4Q TPO B 169 UNP P14737 THR 192 MODIFIED RESIDUE

SEQRES 1 A 151 ALA THR GLN ARG PHE LEU ILE GLU LYS PHE SER GLN GLU SEQRES 2 A 151 GLN ILE GLY GLU ASN ILE VAL CYS ARG VAL ILE CYS THR SEQRES 3 A 151 THR GLY GLN ILE PRO ILE ARG ASP LEU SER ALA ASP ILE SEQRES 4 A 151 SER GLN VAL LEU LYS GLU LYS ARG SER ILE LYS LYS VAL SEQRES 5 A 151 TRP THR PHE GLY ARG ASN PRO ALA CYS ASP TYR HIS LEU SEQRES 6 A 151 GLY ASN ILE SER ARG LEU SER ASN LYS HIS PHE GLN ILE SEQRES 7 A 151 LEU LEU GLY GLU ASP GLY ASN LEU LEU LEU ASN ASP ILE SEQRES 8 A 151 SER THR ASN GLY THR TRP LEU ASN GLY GLN LYS VAL GLU SEQRES 9 A 151 LYS ASN SER ASN GLN LEU LEU SER GLN GLY ASP GLU ILE SEQRES 10 A 151 THR VAL GLY VAL GLY VAL GLU SER ASP ILE LEU SER LEU SEQRES 11 A 151 VAL ILE PHE ILE ASN ASP LYS PHE LYS GLN CYS LEU GLU SEQRES 12 A 151 GLN ASN LYS VAL ASP ARG ILE ARG SEQRES 1 B 13 SER LEU GLU VAL TPO GLU ALA ASP ALA THR PHE VAL GLN

MODRES 1J4Q TPO B 169 THR PHOSPHOTHREONINE

HET TPO B 169 17

HETNAM TPO PHOSPHOTHREONINE

HETSYN TPO PHOSPHONOTHREONINE

FORMUL 2 TPO C4 H10 N O6 P

HELIX 1 1 THR A 15 GLU A 26 1 12 HELIX 2 2 ASP A 51 GLU A 58 1 8 HELIX 3 3 ASN A 148 ASN A 158 1 11

SHEET 1 A 6 ARG A 46 SER A 49 0 SHEET 2 A 6 ILE A 32 CYS A 38 -1 N CYS A 34 O LEU A 48 SHEET 3 A 6 LEU A 141 ILE A 147 -1 O PHE A 146 N ARG A 35 SHEET 4 A 6 GLU A 129 VAL A 132 -1 N VAL A 132 O LEU A 141 SHEET 5 A 6 THR A 109 LEU A 111 -1 N TRP A 110 O THR A 131 SHEET 6 A 6 GLN A 114 LYS A 115 -1 O GLN A 114 N LEU A 111 SHEET 1 B 5 TYR A 76 HIS A 77 0 SHEET 2 B 5 ILE A 62 GLY A 69 1 N GLY A 69 O TYR A 76 SHEET 3 B 5 PHE A 89 GLY A 94 -1 O PHE A 89 N PHE A 68 SHEET 4 B 5 ASN A 98 ASP A 103 -1 O ASN A 102 N GLN A 90 SHEET 5 B 5 ASN A 121 LEU A 123 -1 O GLN A 122 N LEU A 101

LINK C VAL B 168 N TPO B 169 1555 1555 1.33 LINK C TPO B 169 N GLU B 170 1555 1555 1.33

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000