10 20 30 40 50 60 70 80 1J0K - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 14-NOV-02 1J0K
TITLE CRYSTAL STRUCTURE OF NEOPULLULANASE E357Q COMPLEX WITH TITLE 2 ISOPANOSE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEOPULLULANASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.1.135; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: TG-1; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PUC129
KEYWDS BETA-ALPHA-BARRELS, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR H.HONDOH,T.KURIKI,Y.MATSUURA
REVDAT 2 24-FEB-09 1J0K 1 VERSN REVDAT 1 28-JAN-03 1J0K 0
JRNL AUTH H.HONDOH,T.KURIKI,Y.MATSUURA JRNL TITL THREE-DIMENSIONAL STRUCTURE AND SUBSTRATE BINDING JRNL TITL 2 OF BACILLUS STEAROTHERMOPHILUS NEOPULLULANASE JRNL REF J.MOL.BIOL. V. 326 177 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12547200 JRNL DOI 10.1016/S0022-2836(02)01402-X
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.TAKATA,T.KURIKI,S.OKADA,Y.TAKESADA,M.IIZUKA, REMARK 1 AUTH 2 N.MINAMIURA,T.IMANAKA REMARK 1 TITL ACTION OF NEOPULLULANASE. NEOPULLULANASE CATALYZES REMARK 1 TITL 2 BOTH HYDROLYSIS AND TRANSGLYCOSYLATION AT REMARK 1 TITL 3 ALPHA-(1,4)- AND ALPHA-(1,6)-GLUCOSIDIC LINKAGES REMARK 1 REF J.BIOL.CHEM. V. 267 18447 1992 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.IMANAKA,T.KURIKI REMARK 1 TITL PATTERN OF ACTION OF BACILLUS STEAROTHERMOPHILUS REMARK 1 TITL 2 NEOPULLULANASE ON PULLULAN REMARK 1 REF J.BACTERIOL. V. 171 369 1989 REMARK 1 REFN ISSN 0021-9193 REMARK 1 REFERENCE 3 REMARK 1 AUTH T.KURIKI,S.OKADA,T.IMANAKA REMARK 1 TITL NEW TYPE OF PULLULANASE FROM BACILLUS REMARK 1 TITL 2 STEAROTHERMOPHILUS AND MOLECULAR CLONING AND REMARK 1 TITL 3 EXPRESSION OF THE GENE IN BACILLUS SUBTILIS REMARK 1 REF J.BACTERIOL. V. 170 1554 1988 REMARK 1 REFN ISSN 0021-9193
REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 19648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 997 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9778 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 125 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.40 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1J0K COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-NOV-02. REMARK 100 THE RCSB ID CODE IS RCSB005478.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL40B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20262 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, SODIUM CHLORIDE, REMARK 280 CACODYLATE , PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.87900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER IN THE ASSYMETRIC REMARK 300 UNIT.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 10 72.28 -61.82 REMARK 500 ALA A 11 -175.08 177.88 REMARK 500 ASP A 12 -126.79 32.42 REMARK 500 ASP A 19 -148.78 -146.19 REMARK 500 GLU A 21 0.27 -169.08 REMARK 500 ASP A 32 -6.63 73.76 REMARK 500 PRO A 44 -15.85 -42.98 REMARK 500 ASN A 49 33.36 39.95 REMARK 500 GLN A 53 105.65 -59.22 REMARK 500 ASP A 65 -147.61 -124.06 REMARK 500 GLU A 105 134.85 -172.68 REMARK 500 PRO A 118 -66.01 -26.64 REMARK 500 LYS A 133 0.80 -67.46 REMARK 500 PRO A 142 -36.62 -27.92 REMARK 500 SER A 157 151.71 -47.95 REMARK 500 TRP A 160 105.13 -33.21 REMARK 500 ASP A 208 77.58 -111.94 REMARK 500 ASP A 211 103.62 -161.31 REMARK 500 HIS A 272 73.82 -100.50 REMARK 500 ALA A 290 -129.38 48.89 REMARK 500 HIS A 360 164.92 166.90 REMARK 500 ASP A 361 121.11 -34.85 REMARK 500 GLN A 370 -97.46 -144.57 REMARK 500 SER A 426 -161.66 -71.19 REMARK 500 ASP A 435 108.76 -59.02 REMARK 500 ASP A 468 128.83 -16.81 REMARK 500 ARG A 472 41.14 -105.76 REMARK 500 TYR A 500 68.35 -107.82 REMARK 500 ARG A 501 -56.88 -16.65 REMARK 500 GLU A 516 20.43 -66.01 REMARK 500 ASP A 528 -69.70 -120.19 REMARK 500 ASN A 536 73.54 -108.84 REMARK 500 ARG A 537 69.58 -65.12 REMARK 500 ALA A 550 36.34 -96.63 REMARK 500 LEU A 558 9.35 -67.63 REMARK 500 ALA A 568 -50.38 -26.81 REMARK 500 PRO B 10 76.12 -64.53 REMARK 500 ALA B 11 162.21 172.59 REMARK 500 ASP B 12 -138.77 44.78 REMARK 500 ASP B 19 -162.85 -127.04 REMARK 500 ASP B 32 -5.11 73.36 REMARK 500 GLN B 48 -73.92 -115.23 REMARK 500 ASP B 65 -161.50 -112.80 REMARK 500 GLU B 92 -14.50 80.01 REMARK 500 GLU B 127 118.18 -160.88 REMARK 500 PRO B 129 118.10 -38.91 REMARK 500 ASN B 149 94.57 -164.12 REMARK 500 SER B 162 -72.55 -42.77 REMARK 500 PRO B 197 133.35 -36.68 REMARK 500 ARG B 200 125.11 -34.97 REMARK 500 SER B 203 179.17 -57.94 REMARK 500 GLU B 263 -35.23 -35.11 REMARK 500 LYS B 266 -8.67 -57.36 REMARK 500 THR B 280 -12.75 -153.06 REMARK 500 ALA B 290 -120.99 52.42 REMARK 500 THR B 300 2.57 -62.02 REMARK 500 TYR B 315 -70.34 -49.32 REMARK 500 ASP B 321 41.52 81.28 REMARK 500 VAL B 329 22.10 49.45 REMARK 500 ASP B 351 55.75 -91.65 REMARK 500 TRP B 359 45.55 -99.90 REMARK 500 GLN B 370 -105.54 -143.30 REMARK 500 PHE B 386 -61.09 -93.67 REMARK 500 ASP B 468 126.24 -14.26 REMARK 500 ASN B 483 107.06 -50.09 REMARK 500 ASP B 514 55.05 -93.75 REMARK 500 ASP B 515 85.27 162.94 REMARK 500 MET B 517 -11.74 -148.30 REMARK 500 ASN B 518 -23.07 -153.76 REMARK 500 ASP B 539 24.71 -78.75 REMARK 500 PHE B 564 180.00 174.62 REMARK 500 GLU B 567 -166.47 -102.83 REMARK 500 ALA B 568 25.04 -71.56 REMARK 500 GLU B 569 64.83 -174.90 REMARK 500 THR B 570 163.90 -44.30 REMARK 500 VAL B 581 149.60 -173.93 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1000 DISTANCE = 5.56 ANGSTROMS REMARK 525 HOH B1072 DISTANCE = 5.73 ANGSTROMS REMARK 525 HOH B1073 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH A1022 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B1089 DISTANCE = 5.10 ANGSTROMS REMARK 525 HOH B1094 DISTANCE = 7.40 ANGSTROMS REMARK 525 HOH B1122 DISTANCE = 5.11 ANGSTROMS REMARK 525 HOH A1106 DISTANCE = 7.32 ANGSTROMS REMARK 525 HOH A1108 DISTANCE = 7.30 ANGSTROMS REMARK 525 HOH A1109 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A1110 DISTANCE = 5.52 ANGSTROMS REMARK 525 HOH A1111 DISTANCE = 7.18 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLC A 601 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLC A 602 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLC A 603 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLC B 604 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLC B 605 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLC B 606
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1J0H RELATED DB: PDB REMARK 900 1J0H CONTAINS CHLORIDE ION AND CALCIUM ION REMARK 900 RELATED ID: 1J0I RELATED DB: PDB REMARK 900 1J0I CONTAINS PANOSE REMARK 900 RELATED ID: 1J0J RELATED DB: PDB REMARK 900 1J0J CONTAINS MALTOTETRAOSE AND E357Q MUTANT
DBREF 1J0K A 1 588 UNP P38940 NEPU_BACST 1 588 DBREF 1J0K B 1 588 UNP P38940 NEPU_BACST 1 588
SEQADV 1J0K ALA A 290 UNP P38940 ARG 290 SEE REMARK 999 SEQADV 1J0K GLN A 357 UNP P38940 GLU 357 ENGINEERED SEQADV 1J0K ALA B 290 UNP P38940 ARG 290 SEE REMARK 999 SEQADV 1J0K GLN B 357 UNP P38940 GLU 357 ENGINEERED
SEQRES 1 A 588 MET ARG LYS GLU ALA ILE TYR HIS ARG PRO ALA ASP ASN SEQRES 2 A 588 PHE ALA TYR ALA TYR ASP SER GLU THR LEU HIS LEU ARG SEQRES 3 A 588 LEU ARG THR LYS LYS ASP ASP ILE ASP ARG VAL GLU LEU SEQRES 4 A 588 LEU HIS GLY ASP PRO TYR ASP TRP GLN ASN GLY ALA TRP SEQRES 5 A 588 GLN PHE GLN MET MET PRO MET ARG LYS THR GLY SER ASP SEQRES 6 A 588 GLU LEU PHE ASP TYR TRP PHE ALA GLU VAL LYS PRO PRO SEQRES 7 A 588 TYR ARG ARG LEU ARG TYR GLY PHE VAL LEU TYR SER GLY SEQRES 8 A 588 GLU GLU LYS LEU VAL TYR THR GLU LYS GLY PHE TYR PHE SEQRES 9 A 588 GLU VAL PRO THR ASP ASP THR ALA TYR TYR PHE CYS PHE SEQRES 10 A 588 PRO PHE LEU HIS ARG VAL ASP LEU PHE GLU ALA PRO ASP SEQRES 11 A 588 TRP VAL LYS ASP THR VAL TRP TYR GLN ILE PHE PRO GLU SEQRES 12 A 588 ARG PHE ALA ASN GLY ASN PRO SER ILE SER PRO GLU GLY SEQRES 13 A 588 SER ARG PRO TRP GLY SER GLU ASP PRO THR PRO THR SER SEQRES 14 A 588 PHE PHE GLY GLY ASP LEU GLN GLY ILE ILE ASP HIS LEU SEQRES 15 A 588 ASP TYR LEU VAL ASP LEU GLY ILE THR GLY ILE TYR LEU SEQRES 16 A 588 THR PRO ILE PHE ARG SER PRO SER ASN HIS LYS TYR ASP SEQRES 17 A 588 THR ALA ASP TYR PHE GLU VAL ASP PRO HIS PHE GLY ASP SEQRES 18 A 588 LYS GLU THR LEU LYS THR LEU ILE ASP ARG CYS HIS GLU SEQRES 19 A 588 LYS GLY ILE ARG VAL MET LEU ASP ALA VAL PHE ASN HIS SEQRES 20 A 588 CYS GLY TYR GLU PHE ALA PRO PHE GLN ASP VAL TRP LYS SEQRES 21 A 588 ASN GLY GLU SER SER LYS TYR LYS ASP TRP PHE HIS ILE SEQRES 22 A 588 HIS GLU PHE PRO LEU GLN THR GLU PRO ARG PRO ASN TYR SEQRES 23 A 588 ASP THR PHE ALA PHE VAL PRO GLN MET PRO LYS LEU ASN SEQRES 24 A 588 THR ALA ASN PRO GLU VAL LYS ARG TYR LEU LEU ASP VAL SEQRES 25 A 588 ALA THR TYR TRP ILE ARG GLU PHE ASP ILE ASP GLY TRP SEQRES 26 A 588 ARG LEU ASP VAL ALA ASN GLU ILE ASP HIS GLU PHE TRP SEQRES 27 A 588 ARG GLU PHE ARG GLN GLU VAL LYS ALA LEU LYS PRO ASP SEQRES 28 A 588 VAL TYR ILE LEU GLY GLN ILE TRP HIS ASP ALA MET PRO SEQRES 29 A 588 TRP LEU ARG GLY ASP GLN PHE ASP ALA VAL MET ASN TYR SEQRES 30 A 588 PRO PHE THR ASP GLY VAL LEU ARG PHE PHE ALA LYS GLU SEQRES 31 A 588 GLU ILE SER ALA ARG GLN PHE ALA ASN GLN MET MET HIS SEQRES 32 A 588 VAL LEU HIS SER TYR PRO ASN ASN VAL ASN GLU ALA ALA SEQRES 33 A 588 PHE ASN LEU LEU GLY SER HIS ASP THR SER ARG ILE LEU SEQRES 34 A 588 THR VAL CYS GLY GLY ASP ILE ARG LYS VAL LYS LEU LEU SEQRES 35 A 588 PHE LEU PHE GLN LEU THR PHE THR GLY SER PRO CYS ILE SEQRES 36 A 588 TYR TYR GLY ASP GLU ILE GLY MET THR GLY GLY ASN ASP SEQRES 37 A 588 PRO GLU CYS ARG LYS CYS MET VAL TRP ASP PRO MET GLN SEQRES 38 A 588 GLN ASN LYS GLU LEU HIS GLN HIS VAL LYS GLN LEU ILE SEQRES 39 A 588 ALA LEU ARG LYS GLN TYR ARG SER LEU ARG ARG GLY GLU SEQRES 40 A 588 ILE SER PHE LEU HIS ALA ASP ASP GLU MET ASN TYR LEU SEQRES 41 A 588 ILE TYR LYS LYS THR ASP GLY ASP GLU THR VAL LEU VAL SEQRES 42 A 588 ILE ILE ASN ARG SER ASP GLN LYS ALA ASP ILE PRO ILE SEQRES 43 A 588 PRO LEU ASP ALA ARG GLY THR TRP LEU VAL ASN LEU LEU SEQRES 44 A 588 THR GLY GLU ARG PHE ALA ALA GLU ALA GLU THR LEU CYS SEQRES 45 A 588 THR SER LEU PRO PRO TYR GLY PHE VAL LEU TYR ALA ILE SEQRES 46 A 588 GLU HIS TRP SEQRES 1 B 588 MET ARG LYS GLU ALA ILE TYR HIS ARG PRO ALA ASP ASN SEQRES 2 B 588 PHE ALA TYR ALA TYR ASP SER GLU THR LEU HIS LEU ARG SEQRES 3 B 588 LEU ARG THR LYS LYS ASP ASP ILE ASP ARG VAL GLU LEU SEQRES 4 B 588 LEU HIS GLY ASP PRO TYR ASP TRP GLN ASN GLY ALA TRP SEQRES 5 B 588 GLN PHE GLN MET MET PRO MET ARG LYS THR GLY SER ASP SEQRES 6 B 588 GLU LEU PHE ASP TYR TRP PHE ALA GLU VAL LYS PRO PRO SEQRES 7 B 588 TYR ARG ARG LEU ARG TYR GLY PHE VAL LEU TYR SER GLY SEQRES 8 B 588 GLU GLU LYS LEU VAL TYR THR GLU LYS GLY PHE TYR PHE SEQRES 9 B 588 GLU VAL PRO THR ASP ASP THR ALA TYR TYR PHE CYS PHE SEQRES 10 B 588 PRO PHE LEU HIS ARG VAL ASP LEU PHE GLU ALA PRO ASP SEQRES 11 B 588 TRP VAL LYS ASP THR VAL TRP TYR GLN ILE PHE PRO GLU SEQRES 12 B 588 ARG PHE ALA ASN GLY ASN PRO SER ILE SER PRO GLU GLY SEQRES 13 B 588 SER ARG PRO TRP GLY SER GLU ASP PRO THR PRO THR SER SEQRES 14 B 588 PHE PHE GLY GLY ASP LEU GLN GLY ILE ILE ASP HIS LEU SEQRES 15 B 588 ASP TYR LEU VAL ASP LEU GLY ILE THR GLY ILE TYR LEU SEQRES 16 B 588 THR PRO ILE PHE ARG SER PRO SER ASN HIS LYS TYR ASP SEQRES 17 B 588 THR ALA ASP TYR PHE GLU VAL ASP PRO HIS PHE GLY ASP SEQRES 18 B 588 LYS GLU THR LEU LYS THR LEU ILE ASP ARG CYS HIS GLU SEQRES 19 B 588 LYS GLY ILE ARG VAL MET LEU ASP ALA VAL PHE ASN HIS SEQRES 20 B 588 CYS GLY TYR GLU PHE ALA PRO PHE GLN ASP VAL TRP LYS SEQRES 21 B 588 ASN GLY GLU SER SER LYS TYR LYS ASP TRP PHE HIS ILE SEQRES 22 B 588 HIS GLU PHE PRO LEU GLN THR GLU PRO ARG PRO ASN TYR SEQRES 23 B 588 ASP THR PHE ALA PHE VAL PRO GLN MET PRO LYS LEU ASN SEQRES 24 B 588 THR ALA ASN PRO GLU VAL LYS ARG TYR LEU LEU ASP VAL SEQRES 25 B 588 ALA THR TYR TRP ILE ARG GLU PHE ASP ILE ASP GLY TRP SEQRES 26 B 588 ARG LEU ASP VAL ALA ASN GLU ILE ASP HIS GLU PHE TRP SEQRES 27 B 588 ARG GLU PHE ARG GLN GLU VAL LYS ALA LEU LYS PRO ASP SEQRES 28 B 588 VAL TYR ILE LEU GLY GLN ILE TRP HIS ASP ALA MET PRO SEQRES 29 B 588 TRP LEU ARG GLY ASP GLN PHE ASP ALA VAL MET ASN TYR SEQRES 30 B 588 PRO PHE THR ASP GLY VAL LEU ARG PHE PHE ALA LYS GLU SEQRES 31 B 588 GLU ILE SER ALA ARG GLN PHE ALA ASN GLN MET MET HIS SEQRES 32 B 588 VAL LEU HIS SER TYR PRO ASN ASN VAL ASN GLU ALA ALA SEQRES 33 B 588 PHE ASN LEU LEU GLY SER HIS ASP THR SER ARG ILE LEU SEQRES 34 B 588 THR VAL CYS GLY GLY ASP ILE ARG LYS VAL LYS LEU LEU SEQRES 35 B 588 PHE LEU PHE GLN LEU THR PHE THR GLY SER PRO CYS ILE SEQRES 36 B 588 TYR TYR GLY ASP GLU ILE GLY MET THR GLY GLY ASN ASP SEQRES 37 B 588 PRO GLU CYS ARG LYS CYS MET VAL TRP ASP PRO MET GLN SEQRES 38 B 588 GLN ASN LYS GLU LEU HIS GLN HIS VAL LYS GLN LEU ILE SEQRES 39 B 588 ALA LEU ARG LYS GLN TYR ARG SER LEU ARG ARG GLY GLU SEQRES 40 B 588 ILE SER PHE LEU HIS ALA ASP ASP GLU MET ASN TYR LEU SEQRES 41 B 588 ILE TYR LYS LYS THR ASP GLY ASP GLU THR VAL LEU VAL SEQRES 42 B 588 ILE ILE ASN ARG SER ASP GLN LYS ALA ASP ILE PRO ILE SEQRES 43 B 588 PRO LEU ASP ALA ARG GLY THR TRP LEU VAL ASN LEU LEU SEQRES 44 B 588 THR GLY GLU ARG PHE ALA ALA GLU ALA GLU THR LEU CYS SEQRES 45 B 588 THR SER LEU PRO PRO TYR GLY PHE VAL LEU TYR ALA ILE SEQRES 46 B 588 GLU HIS TRP
HET GLC A 601 11 HET GLC A 602 11 HET GLC A 603 12 HET GLC B 604 11 HET GLC B 605 11 HET GLC B 606 12
HETNAM GLC ALPHA-D-GLUCOSE
FORMUL 3 GLC 6(C6 H12 O6) FORMUL 5 HOH *125(H2 O)
HELIX 1 1 ARG A 2 ILE A 6 5 5 HELIX 2 2 HIS A 121 LEU A 125 5 5 HELIX 3 3 ASP A 130 THR A 135 5 6 HELIX 4 4 PHE A 141 PHE A 145 5 5 HELIX 5 5 ASP A 174 GLY A 189 1 16 HELIX 6 6 ASP A 221 LYS A 235 1 15 HELIX 7 7 PHE A 252 GLY A 262 1 11 HELIX 8 8 GLU A 263 SER A 265 5 3 HELIX 9 9 TYR A 267 PHE A 271 5 5 HELIX 10 10 ASN A 302 ASP A 321 1 20 HELIX 11 11 VAL A 329 ILE A 333 5 5 HELIX 12 12 ASP A 334 LYS A 349 1 16 HELIX 13 13 ALA A 362 LEU A 366 5 5 HELIX 14 14 ASN A 376 ALA A 388 1 13 HELIX 15 15 SER A 393 HIS A 406 1 14 HELIX 16 16 PRO A 409 GLU A 414 1 6 HELIX 17 17 ARG A 427 CYS A 432 1 6 HELIX 18 18 ASP A 435 LEU A 447 1 13 HELIX 19 19 GLY A 458 GLY A 462 5 5 HELIX 20 20 PRO A 469 LYS A 473 5 5 HELIX 21 21 ASN A 483 TYR A 500 1 18 HELIX 22 22 ARG A 501 GLY A 506 1 6 HELIX 23 23 ARG B 2 ILE B 6 5 5 HELIX 24 24 ALA B 11 ASN B 13 5 3 HELIX 25 25 ASP B 130 THR B 135 1 6 HELIX 26 26 PHE B 141 ALA B 146 1 6 HELIX 27 27 ASN B 149 SER B 153 5 5 HELIX 28 28 ASP B 174 GLY B 189 1 16 HELIX 29 29 ASP B 221 LYS B 235 1 15 HELIX 30 30 PHE B 252 LYS B 260 1 9 HELIX 31 31 ASN B 261 SER B 265 5 5 HELIX 32 32 TYR B 267 PHE B 271 5 5 HELIX 33 33 ASN B 302 ASP B 321 1 20 HELIX 34 34 VAL B 329 ILE B 333 5 5 HELIX 35 35 ASP B 334 LYS B 349 1 16 HELIX 36 36 ALA B 362 LEU B 366 5 5 HELIX 37 37 ASN B 376 ALA B 388 1 13 HELIX 38 38 SER B 393 HIS B 406 1 14 HELIX 39 39 PRO B 409 GLU B 414 1 6 HELIX 40 40 ARG B 427 CYS B 432 1 6 HELIX 41 41 ASP B 435 LEU B 447 1 13 HELIX 42 42 PRO B 469 LYS B 473 5 5 HELIX 43 43 ASN B 483 TYR B 500 1 18 HELIX 44 44 TYR B 500 GLY B 506 1 7
SHEET 1 A 4 ALA A 15 ALA A 17 0 SHEET 2 A 4 LEU A 23 LYS A 30 -1 O HIS A 24 N TYR A 16 SHEET 3 A 4 PHE A 68 VAL A 75 -1 O ASP A 69 N THR A 29 SHEET 4 A 4 ARG A 60 SER A 64 -1 N ARG A 60 O PHE A 72 SHEET 1 B 5 GLN A 55 PRO A 58 0 SHEET 2 B 5 ARG A 36 GLY A 42 -1 N LEU A 39 O MET A 57 SHEET 3 B 5 LEU A 82 SER A 90 -1 O VAL A 87 N GLU A 38 SHEET 4 B 5 GLU A 93 THR A 98 -1 O LEU A 95 N LEU A 88 SHEET 5 B 5 GLY A 101 TYR A 103 -1 O TYR A 103 N VAL A 96 SHEET 1 C 4 GLN A 55 PRO A 58 0 SHEET 2 C 4 ARG A 36 GLY A 42 -1 N LEU A 39 O MET A 57 SHEET 3 C 4 LEU A 82 SER A 90 -1 O VAL A 87 N GLU A 38 SHEET 4 C 4 PHE A 115 PHE A 117 -1 O PHE A 115 N TYR A 84 SHEET 1 D 2 TRP A 47 GLN A 48 0 SHEET 2 D 2 ALA A 51 TRP A 52 -1 O ALA A 51 N GLN A 48 SHEET 1 E 8 ALA A 373 VAL A 374 0 SHEET 2 E 8 TYR A 353 GLY A 356 1 N GLY A 356 O ALA A 373 SHEET 3 E 8 GLY A 324 LEU A 327 1 N LEU A 327 O LEU A 355 SHEET 4 E 8 ARG A 238 ALA A 243 1 N LEU A 241 O ARG A 326 SHEET 5 E 8 GLY A 192 LEU A 195 1 N ILE A 193 O ARG A 238 SHEET 6 E 8 TRP A 137 ILE A 140 1 N ILE A 140 O TYR A 194 SHEET 7 E 8 SER A 452 TYR A 456 1 O ILE A 455 N TRP A 137 SHEET 8 E 8 PHE A 417 LEU A 419 1 N ASN A 418 O CYS A 454 SHEET 1 F 2 PHE A 199 ARG A 200 0 SHEET 2 F 2 ASP A 211 VAL A 215 -1 O GLU A 214 N ARG A 200 SHEET 1 G 2 THR A 288 PHE A 289 0 SHEET 2 G 2 VAL A 292 PRO A 296 -1 O VAL A 292 N PHE A 289 SHEET 1 H 6 GLU A 507 PHE A 510 0 SHEET 2 H 6 TYR A 519 THR A 525 -1 O THR A 525 N GLU A 507 SHEET 3 H 6 THR A 530 ASN A 536 -1 O VAL A 533 N TYR A 522 SHEET 4 H 6 PHE A 580 HIS A 587 -1 O TYR A 583 N LEU A 532 SHEET 5 H 6 THR A 553 ASN A 557 -1 N TRP A 554 O GLU A 586 SHEET 6 H 6 ARG A 563 ALA A 565 -1 O PHE A 564 N LEU A 555 SHEET 1 I 2 ALA A 542 PRO A 545 0 SHEET 2 I 2 CYS A 572 LEU A 575 -1 O THR A 573 N ILE A 544 SHEET 1 J 8 ALA B 15 ALA B 17 0 SHEET 2 J 8 LEU B 23 LYS B 30 -1 O HIS B 24 N TYR B 16 SHEET 3 J 8 PHE B 68 VAL B 75 -1 O TRP B 71 N LEU B 27 SHEET 4 J 8 GLN B 55 ASP B 65 -1 N GLY B 63 O TYR B 70 SHEET 5 J 8 ARG B 36 GLY B 42 -1 N VAL B 37 O MET B 59 SHEET 6 J 8 LEU B 82 TYR B 89 -1 O GLY B 85 N LEU B 40 SHEET 7 J 8 LYS B 94 THR B 98 -1 O LEU B 95 N LEU B 88 SHEET 8 J 8 GLY B 101 TYR B 103 -1 O TYR B 103 N VAL B 96 SHEET 1 K 7 ALA B 15 ALA B 17 0 SHEET 2 K 7 LEU B 23 LYS B 30 -1 O HIS B 24 N TYR B 16 SHEET 3 K 7 PHE B 68 VAL B 75 -1 O TRP B 71 N LEU B 27 SHEET 4 K 7 GLN B 55 ASP B 65 -1 N GLY B 63 O TYR B 70 SHEET 5 K 7 ARG B 36 GLY B 42 -1 N VAL B 37 O MET B 59 SHEET 6 K 7 LEU B 82 TYR B 89 -1 O GLY B 85 N LEU B 40 SHEET 7 K 7 PHE B 115 PHE B 117 -1 O PHE B 117 N LEU B 82 SHEET 1 L 8 ALA B 373 VAL B 374 0 SHEET 2 L 8 TYR B 353 GLY B 356 1 N GLY B 356 O ALA B 373 SHEET 3 L 8 GLY B 324 LEU B 327 1 N TRP B 325 O LEU B 355 SHEET 4 L 8 ARG B 238 ASP B 242 1 N LEU B 241 O ARG B 326 SHEET 5 L 8 GLY B 192 LEU B 195 1 N ILE B 193 O ARG B 238 SHEET 6 L 8 TRP B 137 ILE B 140 1 N ILE B 140 O TYR B 194 SHEET 7 L 8 SER B 452 TYR B 456 1 O PRO B 453 N TRP B 137 SHEET 8 L 8 PHE B 417 LEU B 419 1 N ASN B 418 O CYS B 454 SHEET 1 M 6 GLU B 507 LEU B 511 0 SHEET 2 M 6 TYR B 519 THR B 525 -1 O THR B 525 N GLU B 507 SHEET 3 M 6 THR B 530 ASN B 536 -1 O VAL B 533 N TYR B 522 SHEET 4 M 6 PHE B 580 HIS B 587 -1 O TYR B 583 N LEU B 532 SHEET 5 M 6 THR B 553 ASN B 557 -1 N TRP B 554 O GLU B 586 SHEET 6 M 6 ARG B 563 ALA B 565 -1 O PHE B 564 N LEU B 555 SHEET 1 N 2 ALA B 542 ASP B 543 0 SHEET 2 N 2 SER B 574 LEU B 575 -1 O LEU B 575 N ALA B 542
LINK C1 GLC A 601 O4 GLC A 602 1555 1555 1.40 LINK C1 GLC A 602 O6 GLC A 603 1555 1555 1.40 LINK C1 GLC B 604 O4 GLC B 605 1555 1555 1.40 LINK C1 GLC B 605 O6 GLC B 606 1555 1555 1.40
CISPEP 1 PHE A 276 PRO A 277 0 -0.48 CISPEP 2 GLU A 281 PRO A 282 0 -0.64 CISPEP 3 ASP A 468 PRO A 469 0 0.44 CISPEP 4 PHE B 276 PRO B 277 0 -0.46 CISPEP 5 GLU B 281 PRO B 282 0 0.17 CISPEP 6 ASP B 468 PRO B 469 0 0.10
SITE 1 AC1 6 HIS A 205 TYR A 207 MET A 295 ASP A 468 SITE 2 AC1 6 ARG A 472 GLC A 602 SITE 1 AC2 10 TYR A 207 HIS A 247 PHE A 289 ASP A 328 SITE 2 AC2 10 VAL A 329 GLN A 357 HIS A 423 ASP A 424 SITE 3 AC2 10 GLC A 601 GLC A 603 SITE 1 AC3 5 PHE A 289 VAL A 329 GLN A 357 TRP A 359 SITE 2 AC3 5 GLC A 602 SITE 1 AC4 6 TYR B 207 VAL B 292 MET B 295 ASP B 468 SITE 2 AC4 6 ARG B 472 GLC B 605 SITE 1 AC5 11 TYR B 207 HIS B 247 PHE B 289 MET B 295 SITE 2 AC5 11 ARG B 326 VAL B 329 GLN B 357 HIS B 423 SITE 3 AC5 11 ASP B 424 GLC B 604 GLC B 606 SITE 1 AC6 5 TYR A 45 PHE B 289 VAL B 329 GLN B 357 SITE 2 AC6 5 GLC B 605
CRYST1 68.006 73.758 123.246 90.00 90.15 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014705 0.000000 0.000038 0.00000
SCALE2 0.000000 0.013558 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008114 0.00000