10 20 30 40 50 60 70 80 1IUM - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SIGNALING PROTEIN 06-MAR-02 1IUM
TITLE LOV DOMAIN OF THE YTVA PROTEIN FROM BACILLUS SUBTILIS: A TITLE 2 THEORETICAL MODEL
COMPND MOL_ID: 1; COMPND 2 MOLECULE: BLUE-LIGHT PHOTORECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LOV DOMAIN
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_COMMON: BACTERIA; SOURCE 4 GENUS: YTVA
KEYWDS PHOTOTROPIN HOMOLOG, FMN BINDING DOMAIN, HELIX-TURN-HELIX, KEYWDS 2 FIVE-STRANDED B-SCAFFOLD
EXPDTA THEORETICAL MODEL
AUTHOR E.POLVERINI,A.LOSI
REVDAT 2 07-JAN-03 1IUM 1 REMARK REVDAT 1 27-MAR-02 1IUM 0
JRNL AUTH A.LOSI,E.POLVERINI,B.QUEST,W.GARTNER JRNL TITL FIRST EVIDENCE FOR PHOTOTROPIN-RELATED BLUE-LIGHT JRNL TITL 2 RECEPTORS IN PROKARYOTES JRNL REF BIOPHYS.J. V. 82 2627 2002 JRNL REFN ASTM BIOJAU US ISSN 0006-3495
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE PROGRAM USED FOR THE REFINEMENT REMARK 3 IS THE GROMOS96 FORCE FIELD IMPLEMENTATION OF SWISSPDBVIEWER REMARK 3 AND NOT THE COMPLETE GROMOS96 PACKAGE.
REMARK 4 REMARK 4 1IUM COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-MAR-2002. REMARK 100 THE RCSB ID CODE IS RCSB005294.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THEORETICAL MODEL BUILT USING THE CRYSTAL STRUCTURE OF REMARK 220 THE LOV2 DOMAIN FROM THE ADIANTUM PHYTOCHROME/ REMARK 220 PHOTOTROPIN CHIMERIC PHOTORECEPTOR PHY3 (1G28) AS A REMARK 220 TEMPLATE
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 90 CA GLU A 90 C 0.108 REMARK 500 ASP A 91 N ASP A 91 CA 0.154 REMARK 500 GLU A 90 C ASP A 91 N -0.112 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 90 CA - C - O ANGL. DEV. =-14.1 DEGREES REMARK 500 GLU A 90 CA - C - N ANGL. DEV. = 16.2 DEGREES REMARK 500 ASP A 91 C - N - CA ANGL. DEV. = 21.7 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 90 -116.56 140.41
DBREF 1IUM A 1 102 UNP O34627 PHOT_BACSU 25 126
SEQRES 1 A 102 VAL GLY VAL VAL ILE THR ASP PRO ALA LEU GLU ASP ASN SEQRES 2 A 102 PRO ILE VAL TYR VAL ASN GLN GLY PHE VAL GLN MET THR SEQRES 3 A 102 GLY TYR GLU THR GLU GLU ILE LEU GLY LYS ASN CYS ARG SEQRES 4 A 102 PHE LEU GLN GLY LYS HIS THR ASP PRO ALA GLU VAL ASP SEQRES 5 A 102 ASN ILE ARG THR ALA LEU GLN ASN LYS GLU PRO VAL THR SEQRES 6 A 102 VAL GLN ILE GLN ASN TYR LYS LYS ASP GLY THR MET PHE SEQRES 7 A 102 TRP ASN GLU LEU ASN ILE ASP PRO MET GLU ILE GLU ASP SEQRES 8 A 102 LYS THR TYR PHE VAL GLY ILE GLN ASN ASP ILE
HELIX 1 1 ASN A 19 GLY A 27 1 9 HELIX 2 2 GLU A 29 LEU A 34 1 6 HELIX 3 3 ASN A 37 GLN A 42 5 6 HELIX 4 4 ASP A 47 LYS A 61 1 15
SHEET 1 A 5 ILE A 15 VAL A 18 0 SHEET 2 A 5 GLY A 2 THR A 6 -1 N ILE A 5 O TYR A 17 SHEET 3 A 5 TYR A 94 ASP A 101 -1 O GLY A 97 N VAL A 4 SHEET 4 A 5 MET A 77 MET A 87 -1 N MET A 87 O TYR A 94 SHEET 5 A 5 VAL A 64 TYR A 71 -1 N VAL A 64 O ILE A 84
CISPEP 1 GLU A 90 ASP A 91 0 12.40
CRYST1 1000.000 1000.000 1000.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.001000 0.000000 0.000000 0.00000
SCALE2 0.000000 0.001000 0.000000 0.00000
SCALE3 0.000000 0.000000 0.001000 0.00000