10 20 30 40 50 60 70 80 1IRZ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA BINDING PROTEIN 25-OCT-01 1IRZ
TITLE SOLUTION STRUCTURE OF ARR10-B BELONGING TO THE GARP FAMILY TITLE 2 OF PLANT MYB-RELATED DNA BINDING MOTIFS OF THE ARABIDOPSIS TITLE 3 RESPONSE REGULATORS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARR10-B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA BINDING DOMAIN; COMPND 5 SYNONYM: RECEIVER-LIKE PROTEIN 4, ARP4; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B(+)
KEYWDS HELIX-TURN-HELIX, DNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 15
AUTHOR T.YAMAZAKI,E.KATOH,K.HOSODA,T.MIZUNO
REVDAT 2 24-FEB-09 1IRZ 1 VERSN REVDAT 1 11-FEB-03 1IRZ 0
JRNL AUTH K.HOSODA,A.IMAMURA,E.KATOH,T.HATTA,M.TACHIKI, JRNL AUTH 2 H.YAMADA,T.MIZUNO,T.YAMAZAKI JRNL TITL MOLECULAR STRUCTURE OF THE GARP FAMILY OF PLANT JRNL TITL 2 MYB-RELATED DNA BINDING MOTIFS OF THE ARABIDOPSIS JRNL TITL 3 RESPONSE REGULATORS JRNL REF PLANT CELL V. 14 2015 2003 JRNL REFN ISSN 1040-4651 JRNL PMID 12215502 JRNL DOI 10.1105/TPC.002733
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1IRZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-NOV-01. REMARK 100 THE RCSB ID CODE IS RCSB005220.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : 500MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM ARR10-B[U-15N,13C]; 50MM REMARK 210 SODIUM PHOSPHATE BUFFER 500MM REMARK 210 NACL; 1MM ARR10-B[U-15N,13C]; REMARK 210 50MM SODIUM PHOSPHATE BUFFER REMARK 210 500MM NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 4D_ REMARK 210 13C-SEPARATED_NOESY, HCCH- REMARK 210 TOCSY, CBCA(CO)NH, HNCO, HNCA REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1.8, PIPP/CAPP/STAPP REMARK 210 4.3.2 REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH LOWEST REMARK 210 ENERGIES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED BY MULTIDIMENSIONAL REMARK 210 HETERONUCLEAR NMR SPECTROSCOPY.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 167.06 176.81 REMARK 500 1 GLN A 3 -179.84 -50.06 REMARK 500 1 LYS A 4 55.20 -155.58 REMARK 500 1 ARG A 7 90.45 38.60 REMARK 500 1 TRP A 10 79.74 -160.86 REMARK 500 1 LYS A 43 -2.23 77.19 REMARK 500 1 LYS A 61 -81.16 -61.16 REMARK 500 2 ALA A 2 -178.42 66.18 REMARK 500 2 LYS A 5 98.65 60.88 REMARK 500 2 ARG A 7 87.49 43.58 REMARK 500 2 TRP A 10 76.29 -169.85 REMARK 500 2 LYS A 43 -2.25 77.03 REMARK 500 2 LYS A 62 -33.05 -130.34 REMARK 500 3 GLN A 3 108.98 66.47 REMARK 500 3 LYS A 5 100.67 57.32 REMARK 500 3 TRP A 10 74.95 -164.17 REMARK 500 4 LYS A 5 132.42 61.45 REMARK 500 4 TRP A 10 67.83 -174.10 REMARK 500 5 ALA A 2 111.10 165.87 REMARK 500 5 ARG A 7 90.98 45.22 REMARK 500 5 TRP A 10 63.29 -171.74 REMARK 500 5 LYS A 43 -3.16 78.05 REMARK 500 5 LYS A 62 -48.30 -137.92 REMARK 500 6 ALA A 2 71.36 -119.38 REMARK 500 6 LYS A 4 -173.35 -52.83 REMARK 500 6 ARG A 7 95.02 -43.68 REMARK 500 6 LEU A 9 -60.44 -93.44 REMARK 500 6 TRP A 10 76.13 -150.26 REMARK 500 6 LYS A 43 -8.48 80.22 REMARK 500 6 LYS A 62 59.85 -116.97 REMARK 500 7 GLN A 3 139.49 71.71 REMARK 500 7 LYS A 5 99.37 50.96 REMARK 500 7 ARG A 7 105.75 52.51 REMARK 500 7 TRP A 10 70.39 -170.82 REMARK 500 7 LYS A 43 -7.44 81.84 REMARK 500 8 ALA A 2 -176.39 57.99 REMARK 500 8 LYS A 4 -179.08 -52.72 REMARK 500 8 ARG A 7 100.83 -43.07 REMARK 500 8 TRP A 10 70.02 -168.00 REMARK 500 8 LYS A 43 -0.50 76.37 REMARK 500 9 ALA A 2 60.98 72.31 REMARK 500 9 GLN A 3 55.49 -152.13 REMARK 500 9 LYS A 4 48.20 -178.24 REMARK 500 9 LYS A 5 109.69 56.32 REMARK 500 9 TRP A 10 68.02 -168.97 REMARK 500 9 LYS A 43 -3.76 79.07 REMARK 500 10 ALA A 2 177.83 53.30 REMARK 500 10 GLN A 3 51.94 -114.34 REMARK 500 10 LYS A 5 107.17 -164.48 REMARK 500 10 ARG A 7 103.55 -40.24 REMARK 500 10 VAL A 8 87.28 -65.46 REMARK 500 10 TRP A 10 60.61 -169.30 REMARK 500 10 ASN A 40 25.09 49.24 REMARK 500 10 LYS A 43 -6.39 78.90 REMARK 500 10 LYS A 62 29.25 -145.79 REMARK 500 10 VAL A 63 62.90 -117.62 REMARK 500 11 LYS A 4 67.86 -155.49 REMARK 500 11 ARG A 7 128.02 65.61 REMARK 500 11 TRP A 10 70.32 -169.07 REMARK 500 11 LYS A 43 -7.31 82.46 REMARK 500 11 VAL A 63 177.48 -57.27 REMARK 500 12 GLN A 3 102.25 60.73 REMARK 500 12 ARG A 7 95.28 38.01 REMARK 500 12 TRP A 10 73.93 -172.15 REMARK 500 12 LYS A 43 -2.95 77.00 REMARK 500 12 LYS A 61 56.73 72.82 REMARK 500 12 LYS A 62 71.96 35.08 REMARK 500 13 ALA A 2 158.01 178.71 REMARK 500 13 GLN A 3 65.87 65.86 REMARK 500 13 ARG A 7 84.45 62.22 REMARK 500 13 VAL A 8 130.08 -39.76 REMARK 500 13 TRP A 10 72.22 179.48 REMARK 500 13 LYS A 43 -0.90 76.87 REMARK 500 13 LYS A 62 88.66 -61.09 REMARK 500 14 GLN A 3 110.08 61.81 REMARK 500 14 LYS A 5 99.24 -39.21 REMARK 500 14 ARG A 7 98.48 29.77 REMARK 500 14 VAL A 8 89.40 -50.38 REMARK 500 14 TRP A 10 66.64 -172.57 REMARK 500 14 LYS A 43 -2.35 77.17 REMARK 500 14 LYS A 61 -76.40 -77.96 REMARK 500 14 VAL A 63 116.74 -162.36 REMARK 500 15 LYS A 4 61.88 -171.67 REMARK 500 15 LYS A 5 99.71 54.49 REMARK 500 15 ARG A 7 54.91 38.28 REMARK 500 15 TRP A 10 69.93 -176.30 REMARK 500 15 LYS A 61 76.92 87.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 7 0.29 SIDE_CHAIN REMARK 500 1 ARG A 29 0.12 SIDE_CHAIN REMARK 500 1 ARG A 46 0.23 SIDE_CHAIN REMARK 500 1 ARG A 57 0.32 SIDE_CHAIN REMARK 500 2 ARG A 7 0.09 SIDE_CHAIN REMARK 500 2 ARG A 29 0.31 SIDE_CHAIN REMARK 500 2 ARG A 46 0.09 SIDE_CHAIN REMARK 500 2 ARG A 57 0.17 SIDE_CHAIN REMARK 500 3 ARG A 7 0.26 SIDE_CHAIN REMARK 500 3 ARG A 29 0.32 SIDE_CHAIN REMARK 500 3 ARG A 46 0.19 SIDE_CHAIN REMARK 500 3 ARG A 57 0.16 SIDE_CHAIN REMARK 500 4 ARG A 7 0.23 SIDE_CHAIN REMARK 500 4 ARG A 29 0.20 SIDE_CHAIN REMARK 500 4 ARG A 46 0.18 SIDE_CHAIN REMARK 500 4 ARG A 57 0.19 SIDE_CHAIN REMARK 500 5 ARG A 7 0.29 SIDE_CHAIN REMARK 500 5 ARG A 29 0.19 SIDE_CHAIN REMARK 500 5 ARG A 46 0.31 SIDE_CHAIN REMARK 500 5 ARG A 57 0.12 SIDE_CHAIN REMARK 500 6 ARG A 7 0.18 SIDE_CHAIN REMARK 500 6 ARG A 29 0.31 SIDE_CHAIN REMARK 500 6 ARG A 46 0.27 SIDE_CHAIN REMARK 500 6 ARG A 57 0.21 SIDE_CHAIN REMARK 500 7 ARG A 29 0.12 SIDE_CHAIN REMARK 500 7 ARG A 57 0.26 SIDE_CHAIN REMARK 500 8 ARG A 7 0.22 SIDE_CHAIN REMARK 500 8 ARG A 29 0.31 SIDE_CHAIN REMARK 500 8 ARG A 46 0.18 SIDE_CHAIN REMARK 500 8 ARG A 57 0.31 SIDE_CHAIN REMARK 500 9 ARG A 7 0.29 SIDE_CHAIN REMARK 500 9 ARG A 29 0.30 SIDE_CHAIN REMARK 500 9 ARG A 46 0.30 SIDE_CHAIN REMARK 500 9 ARG A 57 0.09 SIDE_CHAIN REMARK 500 10 ARG A 7 0.22 SIDE_CHAIN REMARK 500 10 ARG A 29 0.15 SIDE_CHAIN REMARK 500 10 ARG A 46 0.09 SIDE_CHAIN REMARK 500 10 ARG A 57 0.25 SIDE_CHAIN REMARK 500 11 ARG A 7 0.32 SIDE_CHAIN REMARK 500 11 ARG A 29 0.23 SIDE_CHAIN REMARK 500 11 ARG A 57 0.30 SIDE_CHAIN REMARK 500 12 ARG A 7 0.15 SIDE_CHAIN REMARK 500 12 ARG A 29 0.31 SIDE_CHAIN REMARK 500 12 ARG A 46 0.32 SIDE_CHAIN REMARK 500 12 ARG A 57 0.32 SIDE_CHAIN REMARK 500 13 ARG A 7 0.31 SIDE_CHAIN REMARK 500 13 ARG A 29 0.31 SIDE_CHAIN REMARK 500 13 ARG A 46 0.22 SIDE_CHAIN REMARK 500 13 ARG A 57 0.10 SIDE_CHAIN REMARK 500 14 ARG A 7 0.27 SIDE_CHAIN REMARK 500 14 ARG A 29 0.30 SIDE_CHAIN REMARK 500 14 ARG A 46 0.30 SIDE_CHAIN REMARK 500 14 ARG A 57 0.27 SIDE_CHAIN REMARK 500 15 ARG A 7 0.29 SIDE_CHAIN REMARK 500 15 ARG A 29 0.23 SIDE_CHAIN REMARK 500 15 ARG A 46 0.13 SIDE_CHAIN REMARK 500 15 ARG A 57 0.32 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5174 RELATED DB: BMRB REMARK 900 5174 CONTAINS CHEMICAL SHIFTS
DBREF 1IRZ A 1 64 UNP O49397 ARR10_ARATH 179 242
SEQRES 1 A 64 THR ALA GLN LYS LYS PRO ARG VAL LEU TRP THR HIS GLU SEQRES 2 A 64 LEU HIS ASN LYS PHE LEU ALA ALA VAL ASP HIS LEU GLY SEQRES 3 A 64 VAL GLU ARG ALA VAL PRO LYS LYS ILE LEU ASP LEU MET SEQRES 4 A 64 ASN VAL ASP LYS LEU THR ARG GLU ASN VAL ALA SER HIS SEQRES 5 A 64 LEU GLN LYS PHE ARG VAL ALA LEU LYS LYS VAL SER
HELIX 1 1 THR A 11 GLY A 26 1 16 HELIX 2 2 VAL A 31 ASN A 40 1 10 HELIX 3 3 THR A 45 LYS A 62 1 18
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000