10 20 30 40 50 60 70 80 1ING - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE (O-GLYCOSYL) 07-JUL-95 1ING
TITLE INFLUENZA A SUBTYPE N2 NEURAMINIDASE COMPLEXED WITH AROMATIC BANA109 TITLE 2 INHIBITOR
COMPND MOL_ID: 1; COMPND 2 MOLECULE: INFLUENZA A SUBTYPE N2 NEURAMINIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SIALIDASE; COMPND 5 EC: 3.2.1.18
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 11320; SOURCE 4 STRAIN: A/TOKYO/3/67
KEYWDS NEURAMINIDASE, SIALIDASE, HYDROLASE, O-GLYCOSYL, HYDROLASE (O- KEYWDS 2 GLYCOSYL)
EXPDTA X-RAY DIFFRACTION
AUTHOR M.J.JEDRZEJAS,M.LUO
REVDAT 3 13-JUL-11 1ING 1 VERSN REVDAT 2 24-FEB-09 1ING 1 VERSN REVDAT 1 17-AUG-96 1ING 0
JRNL AUTH S.SINGH,M.J.JEDRZEJAS,G.M.AIR,M.LUO,W.G.LAVER, JRNL AUTH 2 W.J.BROUILLETTE JRNL TITL STRUCTURE-BASED INHIBITORS OF INFLUENZA VIRUS SIALIDASE. A JRNL TITL 2 BENZOIC ACID LEAD WITH NOVEL INTERACTION. JRNL REF J.MED.CHEM. V. 38 3217 1995 JRNL REFN ISSN 0022-2623 JRNL PMID 7650674 JRNL DOI 10.1021/JM00017A005
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.LUO,M.J.JEDRZEJAS,S.SINGH,C.L.WHITE,W.J.BROUILLETTE, REMARK 1 AUTH 2 G.M.AIR,W.G.LAVER REMARK 1 TITL BENZOIC ACID INHIBITORS OF INFLUENZA VIRUS NEURAMINIDASE REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 51 504 1995 REMARK 1 REFN ISSN 0907-4449 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.SINGH,M.J.JEDRZEJAS,G.M.AIR,M.LUO,W.G.LAVER, REMARK 1 AUTH 2 W.J.BROUILLETTE REMARK 1 TITL STRUCTURE-BASED INHIBITORS OF INFLUENZA VIRAL NEURAMINIDASE. REMARK 1 TITL 2 A BENZOIC ACID LEAD WITH NOVEL INTERACTION REMARK 1 REF J.MED.CHEM. V. 38 3217 1995 REMARK 1 REFN ISSN 0022-2623 REMARK 1 REFERENCE 3 REMARK 1 AUTH M.J.JEDRZEJAS,S.SINGH,W.J.BROUILLETTE,W.G.LAVER,G.M.AIR, REMARK 1 AUTH 2 M.LUO REMARK 1 TITL STRUCTURES OF AROMATIC INHIBITORS OF INFLUENZA VIRUS REMARK 1 TITL 2 NEURAMINIDASE REMARK 1 REF BIOCHEMISTRY V. 34 3144 1995 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 4 REMARK 1 AUTH J.N.VARGHESE,P.M.COLMAN REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF THE NEURAMINIDASE OF REMARK 1 TITL 2 INFLUENZA VIRUS A/TOKYO/3/67 AT 2.2 A RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 221 473 1991 REMARK 1 REFN ISSN 0022-2836
REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 4.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 19746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6044 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 392 REMARK 3 SOLVENT ATOMS : 250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 2.02 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE REFINED MODEL COORDINATES DEPOSITED CONTAIN THE FULL REMARK 3 PROTEIN SEQUENCE FROM VAL 82 TO ILE 469. THE CALCIUM REMARK 3 RESIDUE, CA 470, STABILIZES A LOOP NEAR THE NEURAMINIDASE REMARK 3 ACTIVE SITE. THE BANA109 INHIBITOR IS RESIDUE ST1 471.
REMARK 4 REMARK 4 1ING COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-93 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 11.8 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XENGEN REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21824 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 11.8
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.81000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.81000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 59.71000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.53000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 59.71000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.53000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.81000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 59.71000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.53000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.81000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 59.71000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 69.53000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA GLY B 170 H2 HOH B 486 0.76 REMARK 500 CA GLY B 170 O HOH B 486 0.79 REMARK 500 O GLY B 456 HO3 MAN A 483 0.80 REMARK 500 OG1 THR B 455 H61 NAG A 478 0.81 REMARK 500 C GLY B 170 H2 HOH B 486 0.97 REMARK 500 N ARG B 394 H2 HOH B 489 0.99 REMARK 500 HH21 ARG A 210 H1 HOH A 607 1.03 REMARK 500 H ARG B 394 H2 HOH B 489 1.05 REMARK 500 CA ARG B 394 O HOH B 489 1.06 REMARK 500 CA ARG B 394 H2 HOH B 489 1.20 REMARK 500 N ARG B 394 O HOH B 489 1.21 REMARK 500 HE ARG B 327 HH21 ARG B 364 1.23 REMARK 500 HE ARG A 327 HH21 ARG A 364 1.23 REMARK 500 HH12 ARG A 85 H2 HOH A 503 1.27 REMARK 500 HH12 ARG B 85 H2 HOH B 512 1.27 REMARK 500 CB THR B 455 H61 NAG A 478 1.34 REMARK 500 CA GLY B 170 H1 HOH B 486 1.34 REMARK 500 HE ARG A 430 H1 HOH A 496 1.35 REMARK 500 HE ARG B 430 H1 HOH B 505 1.35 REMARK 500 HH11 ARG A 283 HE ARG A 288 1.42 REMARK 500 HH11 ARG B 283 HE ARG B 288 1.42 REMARK 500 HH12 ARG A 283 HH21 ARG A 288 1.42 REMARK 500 HH12 ARG B 283 HH21 ARG B 288 1.42 REMARK 500 CA ARG B 394 H1 HOH B 489 1.48 REMARK 500 O LEU B 163 H1 HOH B 494 1.51 REMARK 500 HH11 ARG A 210 H2 HOH A 508 1.51 REMARK 500 HH11 ARG B 210 H2 HOH B 520 1.51 REMARK 500 CG2 THR B 455 H1 NAG A 478 1.53 REMARK 500 C ARG B 394 H1 HOH B 489 1.53 REMARK 500 C ARG B 394 O HOH B 489 1.57 REMARK 500 C GLY B 170 O HOH B 486 1.59 REMARK 500 C GLY B 170 H1 HOH B 486 1.59 REMARK 500 H GLN A 173 O GLY B 164 1.60 REMARK 500 O ARG B 394 O HOH B 489 1.94 REMARK 500 CB ARG B 394 O HOH B 489 1.95 REMARK 500 N GLY B 170 O HOH B 486 2.09 REMARK 500 OG1 THR B 455 C5 NAG A 478 2.13 REMARK 500 CB THR B 455 C6 NAG A 478 2.15 REMARK 500 O GLY B 170 O HOH B 486 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 H3 FUL A 477 H4 MAN A 481 3654 0.40 REMARK 500 HZ1 LYS B 368 H1 HOH B 613 3654 0.46 REMARK 500 C4 FUL A 477 H61 MAN A 481 3654 0.59 REMARK 500 CA GLY A 170 H2 HOH A 602 4555 0.76 REMARK 500 CA GLY A 170 O HOH A 602 4555 0.79 REMARK 500 O GLY A 456 HO3 MAN B 483 4555 0.80 REMARK 500 OG1 THR A 455 H61 NAG B 478 4555 0.81 REMARK 500 O ASN B 328 H2 HOH B 576 3654 0.84 REMARK 500 H5 FUL A 477 H62 MAN A 481 3654 0.93 REMARK 500 N ASP B 329 H1 HOH B 576 3654 0.96 REMARK 500 C GLY A 170 H2 HOH A 602 4555 0.97 REMARK 500 C ASN B 328 H1 HOH B 576 3654 0.99 REMARK 500 N ARG A 394 H2 HOH B 517 4555 0.99 REMARK 500 HH21 ARG B 210 H1 HOH A 553 4555 1.03 REMARK 500 H ARG A 394 H2 HOH B 517 4555 1.05 REMARK 500 H4 FUL A 477 H61 MAN A 481 3654 1.06 REMARK 500 CA ARG A 394 O HOH B 517 4555 1.06 REMARK 500 NZ LYS B 368 H1 HOH B 613 3654 1.09 REMARK 500 H3 FUL A 477 C4 MAN A 481 3654 1.19 REMARK 500 CA ARG A 394 H2 HOH B 517 4555 1.20 REMARK 500 N ARG A 394 O HOH B 517 4555 1.21 REMARK 500 C5 FUL A 477 H61 MAN A 481 3654 1.22 REMARK 500 H4 FUL A 477 C6 MAN A 481 3654 1.27 REMARK 500 C3 FUL A 477 H4 MAN A 481 3654 1.30 REMARK 500 H5 FUL A 477 C6 MAN A 481 3654 1.33 REMARK 500 CB THR A 455 H61 NAG B 478 4555 1.34 REMARK 500 CA GLY A 170 H1 HOH A 602 4555 1.34 REMARK 500 O GLY A 456 O3 MAN B 483 4555 1.34 REMARK 500 O ASN B 328 H1 HOH B 576 3654 1.42 REMARK 500 HZ2 LYS B 368 H2 HOH B 613 3654 1.42 REMARK 500 CA ARG A 394 H1 HOH B 517 4555 1.48 REMARK 500 C5 FUL A 477 H62 MAN A 481 3654 1.49 REMARK 500 O LEU A 163 H1 HOH B 524 4555 1.51 REMARK 500 CG2 THR A 455 H1 NAG B 478 4555 1.53 REMARK 500 C ARG A 394 H1 HOH B 517 4555 1.53 REMARK 500 CA ASP B 329 H1 HOH B 576 3654 1.56 REMARK 500 CE LYS B 368 H2 HOH B 613 3654 1.57 REMARK 500 C ARG A 394 O HOH B 517 4555 1.57 REMARK 500 NZ LYS B 368 H2 HOH B 613 3654 1.58 REMARK 500 C GLY A 170 O HOH A 602 4555 1.59 REMARK 500 OD1 ASP A 313 HH12 ARG B 338 7554 1.59 REMARK 500 C GLY A 170 H1 HOH A 602 4555 1.59 REMARK 500 O GLY A 164 H GLN B 173 4555 1.60 REMARK 500 OG1 THR A 455 C6 NAG B 478 4555 1.65 REMARK 500 OG1 THR A 455 O5 NAG B 478 4555 1.91 REMARK 500 O ARG A 394 O HOH B 517 4555 1.94 REMARK 500 CB ARG A 394 O HOH B 517 4555 1.95 REMARK 500 C GLY A 456 O3 MAN B 483 4555 2.02 REMARK 500 N GLY A 170 O HOH A 602 4555 2.09 REMARK 500 OG1 THR A 455 C5 NAG B 478 4555 2.13 REMARK 500 REMARK 500 THIS ENTRY HAS 53 SYMMETRY CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 421 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 CYS B 421 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 87 22.18 38.45 REMARK 500 SER A 88 50.77 -66.17 REMARK 500 PHE A 100 -49.36 -137.82 REMARK 500 LYS A 102 142.18 -175.97 REMARK 500 ASN A 104 18.02 46.01 REMARK 500 GLU A 119 73.13 44.34 REMARK 500 ALA A 133 138.33 -173.94 REMARK 500 HIS A 144 2.37 -69.34 REMARK 500 ASP A 147 20.87 82.70 REMARK 500 THR A 148 1.71 -65.84 REMARK 500 LEU A 163 106.86 -59.21 REMARK 500 LEU A 169 -22.91 -35.34 REMARK 500 CYS A 175 171.60 176.11 REMARK 500 ALA A 177 131.12 -173.06 REMARK 500 SER A 181 123.92 179.64 REMARK 500 ASP A 185 -17.65 -47.82 REMARK 500 LYS A 187 -30.51 -132.34 REMARK 500 ILE A 222 65.14 35.27 REMARK 500 GLU A 227 30.40 73.10 REMARK 500 ASP A 243 117.19 -167.98 REMARK 500 SER A 245 121.68 -179.04 REMARK 500 GLU A 259 57.40 79.17 REMARK 500 HIS A 264 155.15 173.76 REMARK 500 ALA A 269 -150.12 -101.55 REMARK 500 ALA A 272 132.43 -30.82 REMARK 500 HIS A 274 82.08 174.19 REMARK 500 GLU A 277 72.58 22.96 REMARK 500 TYR A 284 128.62 -24.38 REMARK 500 CYS A 291 -153.35 -110.94 REMARK 500 ASP A 293 96.92 -167.46 REMARK 500 TRP A 295 -75.50 -80.57 REMARK 500 LYS A 296 51.48 -149.82 REMARK 500 SER A 311 -177.43 -65.20 REMARK 500 SER A 315 -154.06 -171.98 REMARK 500 SER A 319 131.73 -37.78 REMARK 500 VAL A 322 135.35 71.28 REMARK 500 THR A 325 124.09 -170.29 REMARK 500 ASN A 328 -74.06 -64.29 REMARK 500 ASP A 329 133.68 158.43 REMARK 500 ASP A 330 -49.87 -21.98 REMARK 500 CYS A 337 -4.25 63.39 REMARK 500 GLN A 347 168.50 157.47 REMARK 500 VAL A 349 143.69 -171.68 REMARK 500 ALA A 353 164.66 175.41 REMARK 500 ASN A 356 97.58 168.34 REMARK 500 PRO A 386 151.74 -48.64 REMARK 500 ASN A 387 56.59 27.41 REMARK 500 SER A 404 -149.20 -128.60 REMARK 500 ARG A 430 151.16 -24.06 REMARK 500 LYS A 431 -75.88 81.68 REMARK 500 REMARK 500 THIS ENTRY HAS 108 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 121 0.07 SIDE CHAIN REMARK 500 TYR B 121 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL A 174 24.4 L L OUTSIDE RANGE REMARK 500 ARG A 300 24.8 L L OUTSIDE RANGE REMARK 500 ARG A 430 23.3 L L OUTSIDE RANGE REMARK 500 VAL B 174 24.4 L L OUTSIDE RANGE REMARK 500 ARG B 300 24.8 L L OUTSIDE RANGE REMARK 500 ARG B 430 23.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 487 DISTANCE = 7.29 ANGSTROMS REMARK 525 HOH A 494 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A 554 DISTANCE = 5.02 ANGSTROMS REMARK 525 HOH A 556 DISTANCE = 8.96 ANGSTROMS REMARK 525 HOH A 557 DISTANCE = 8.22 ANGSTROMS REMARK 525 HOH A 560 DISTANCE = 9.13 ANGSTROMS REMARK 525 HOH A 564 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A 568 DISTANCE = 9.69 ANGSTROMS REMARK 525 HOH A 569 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH A 570 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 579 DISTANCE = 5.31 ANGSTROMS REMARK 525 HOH A 582 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 584 DISTANCE = 10.77 ANGSTROMS REMARK 525 HOH A 588 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH A 589 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A 591 DISTANCE = 5.79 ANGSTROMS REMARK 525 HOH A 592 DISTANCE = 8.38 ANGSTROMS REMARK 525 HOH A 597 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH A 601 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH B 502 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH B 566 DISTANCE = 5.02 ANGSTROMS REMARK 525 HOH B 568 DISTANCE = 8.96 ANGSTROMS REMARK 525 HOH B 569 DISTANCE = 8.22 ANGSTROMS REMARK 525 HOH B 572 DISTANCE = 9.13 ANGSTROMS REMARK 525 HOH B 580 DISTANCE = 9.69 ANGSTROMS REMARK 525 HOH B 581 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH B 591 DISTANCE = 5.31 ANGSTROMS REMARK 525 HOH B 594 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH B 596 DISTANCE = 10.77 ANGSTROMS REMARK 525 HOH B 600 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH B 601 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B 603 DISTANCE = 5.79 ANGSTROMS REMARK 525 HOH B 604 DISTANCE = 8.38 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 470 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 293 O REMARK 620 2 GLY A 297 O 98.8 REMARK 620 3 GLY A 345 O 110.8 94.4 REMARK 620 4 GLN A 347 O 92.1 167.3 87.7 REMARK 620 5 GLN A 347 OE1 156.5 80.6 92.6 86.8 REMARK 620 6 ASP A 324 OD2 87.4 80.2 161.7 94.0 69.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 470 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 293 O REMARK 620 2 GLY B 297 O 98.8 REMARK 620 3 GLY B 345 O 110.8 94.4 REMARK 620 4 GLN B 347 O 92.1 167.3 87.7 REMARK 620 5 GLN B 347 OE1 156.5 80.6 92.6 86.8 REMARK 620 6 ASP B 324 OD2 87.4 80.2 161.7 94.0 69.3 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CAA REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: SUBSTRATE (SIALIC ACID) BINDING RESIDUES REMARK 800 CATALYTIC SITE IN CHAIN A REMARK 800 REMARK 800 SITE_IDENTIFIER: CAB REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: SUBSTRATE (SIALIC ACID) BINDING RESIDUES REMARK 800 CATALYTIC SITE IN CHAIN B REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 472 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 473 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 474 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 475 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BMA A 476 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FUL A 477 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 478 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 479 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BMA A 480 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A 481 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A 482 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A 483 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 484 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 485 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG B 472 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG B 473 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG B 474 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG B 475 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BMA B 476 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FUC B 477 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG B 478 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG B 479 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BMA B 480 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN B 481 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN B 482 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN B 483 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG B 484 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG B 485 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 470 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 470 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ST5 A 471 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ST5 B 471
DBREF 1ING A 82 469 UNP P06820 NRAM_IATOK 82 469 DBREF 1ING B 82 469 UNP P06820 NRAM_IATOK 82 469
SEQADV 1ING ASP A 339 UNP P06820 ASN 339 CONFLICT SEQADV 1ING ASP B 339 UNP P06820 ASN 339 CONFLICT
SEQRES 1 A 388 VAL GLU TYR ARG ASN TRP SER LYS PRO GLN CYS GLN ILE SEQRES 2 A 388 THR GLY PHE ALA PRO PHE SER LYS ASP ASN SER ILE ARG SEQRES 3 A 388 LEU SER ALA GLY GLY ASP ILE TRP VAL THR ARG GLU PRO SEQRES 4 A 388 TYR VAL SER CYS ASP PRO VAL LYS CYS TYR GLN PHE ALA SEQRES 5 A 388 LEU GLY GLN GLY THR THR LEU ASP ASN LYS HIS SER ASN SEQRES 6 A 388 ASP THR VAL HIS ASP ARG ILE PRO HIS ARG THR LEU LEU SEQRES 7 A 388 MET ASN GLU LEU GLY VAL PRO PHE HIS LEU GLY THR ARG SEQRES 8 A 388 GLN VAL CYS ILE ALA TRP SER SER SER SER CYS HIS ASP SEQRES 9 A 388 GLY LYS ALA TRP LEU HIS VAL CYS ILE THR GLY ASP ASP SEQRES 10 A 388 LYS ASN ALA THR ALA SER PHE ILE TYR ASP GLY ARG LEU SEQRES 11 A 388 VAL ASP SER ILE GLY SER TRP SER GLN ASN ILE LEU ARG SEQRES 12 A 388 THR GLN GLU SER GLU CYS VAL CYS ILE ASN GLY THR CYS SEQRES 13 A 388 THR VAL VAL MET THR ASP GLY SER ALA SER GLY ARG ALA SEQRES 14 A 388 ASP THR ARG ILE LEU PHE ILE GLU GLU GLY LYS ILE VAL SEQRES 15 A 388 HIS ILE SER PRO LEU ALA GLY SER ALA GLN HIS VAL GLU SEQRES 16 A 388 GLU CYS SER CYS TYR PRO ARG TYR PRO GLY VAL ARG CYS SEQRES 17 A 388 ILE CYS ARG ASP ASN TRP LYS GLY SER ASN ARG PRO VAL SEQRES 18 A 388 VAL ASP ILE ASN MET GLU ASP TYR SER ILE ASP SER SER SEQRES 19 A 388 TYR VAL CYS SER GLY LEU VAL GLY ASP THR PRO ARG ASN SEQRES 20 A 388 ASP ASP ARG SER SER ASN SER ASN CYS ARG ASP PRO ASN SEQRES 21 A 388 ASN GLU ARG GLY THR GLN GLY VAL LYS GLY TRP ALA PHE SEQRES 22 A 388 ASP ASN GLY ASN ASP LEU TRP MET GLY ARG THR ILE SER SEQRES 23 A 388 LYS ASP LEU ARG SER GLY TYR GLU THR PHE LYS VAL ILE SEQRES 24 A 388 GLY GLY TRP SER THR PRO ASN SER LYS SER GLN ILE ASN SEQRES 25 A 388 ARG GLN VAL ILE VAL ASP SER ASP ASN ARG SER GLY TYR SEQRES 26 A 388 SER GLY ILE PHE SER VAL GLU GLY LYS SER CYS ILE ASN SEQRES 27 A 388 ARG CYS PHE TYR VAL GLU LEU ILE ARG GLY ARG LYS GLN SEQRES 28 A 388 GLU THR ARG VAL TRP TRP THR SER ASN SER ILE VAL VAL SEQRES 29 A 388 PHE CYS GLY THR SER GLY THR TYR GLY THR GLY SER TRP SEQRES 30 A 388 PRO ASP GLY ALA ASN ILE ASN PHE MET PRO ILE SEQRES 1 B 388 VAL GLU TYR ARG ASN TRP SER LYS PRO GLN CYS GLN ILE SEQRES 2 B 388 THR GLY PHE ALA PRO PHE SER LYS ASP ASN SER ILE ARG SEQRES 3 B 388 LEU SER ALA GLY GLY ASP ILE TRP VAL THR ARG GLU PRO SEQRES 4 B 388 TYR VAL SER CYS ASP PRO VAL LYS CYS TYR GLN PHE ALA SEQRES 5 B 388 LEU GLY GLN GLY THR THR LEU ASP ASN LYS HIS SER ASN SEQRES 6 B 388 ASP THR VAL HIS ASP ARG ILE PRO HIS ARG THR LEU LEU SEQRES 7 B 388 MET ASN GLU LEU GLY VAL PRO PHE HIS LEU GLY THR ARG SEQRES 8 B 388 GLN VAL CYS ILE ALA TRP SER SER SER SER CYS HIS ASP SEQRES 9 B 388 GLY LYS ALA TRP LEU HIS VAL CYS ILE THR GLY ASP ASP SEQRES 10 B 388 LYS ASN ALA THR ALA SER PHE ILE TYR ASP GLY ARG LEU SEQRES 11 B 388 VAL ASP SER ILE GLY SER TRP SER GLN ASN ILE LEU ARG SEQRES 12 B 388 THR GLN GLU SER GLU CYS VAL CYS ILE ASN GLY THR CYS SEQRES 13 B 388 THR VAL VAL MET THR ASP GLY SER ALA SER GLY ARG ALA SEQRES 14 B 388 ASP THR ARG ILE LEU PHE ILE GLU GLU GLY LYS ILE VAL SEQRES 15 B 388 HIS ILE SER PRO LEU ALA GLY SER ALA GLN HIS VAL GLU SEQRES 16 B 388 GLU CYS SER CYS TYR PRO ARG TYR PRO GLY VAL ARG CYS SEQRES 17 B 388 ILE CYS ARG ASP ASN TRP LYS GLY SER ASN ARG PRO VAL SEQRES 18 B 388 VAL ASP ILE ASN MET GLU ASP TYR SER ILE ASP SER SER SEQRES 19 B 388 TYR VAL CYS SER GLY LEU VAL GLY ASP THR PRO ARG ASN SEQRES 20 B 388 ASP ASP ARG SER SER ASN SER ASN CYS ARG ASP PRO ASN SEQRES 21 B 388 ASN GLU ARG GLY THR GLN GLY VAL LYS GLY TRP ALA PHE SEQRES 22 B 388 ASP ASN GLY ASN ASP LEU TRP MET GLY ARG THR ILE SER SEQRES 23 B 388 LYS ASP LEU ARG SER GLY TYR GLU THR PHE LYS VAL ILE SEQRES 24 B 388 GLY GLY TRP SER THR PRO ASN SER LYS SER GLN ILE ASN SEQRES 25 B 388 ARG GLN VAL ILE VAL ASP SER ASP ASN ARG SER GLY TYR SEQRES 26 B 388 SER GLY ILE PHE SER VAL GLU GLY LYS SER CYS ILE ASN SEQRES 27 B 388 ARG CYS PHE TYR VAL GLU LEU ILE ARG GLY ARG LYS GLN SEQRES 28 B 388 GLU THR ARG VAL TRP TRP THR SER ASN SER ILE VAL VAL SEQRES 29 B 388 PHE CYS GLY THR SER GLY THR TYR GLY THR GLY SER TRP SEQRES 30 B 388 PRO ASP GLY ALA ASN ILE ASN PHE MET PRO ILE
MODRES 1ING ASN A 86 ASN GLYCOSYLATION SITE MODRES 1ING ASN A 146 ASN GLYCOSYLATION SITE MODRES 1ING ASN A 200 ASN GLYCOSYLATION SITE MODRES 1ING ASN A 234 ASN GLYCOSYLATION SITE MODRES 1ING ASN B 86 ASN GLYCOSYLATION SITE MODRES 1ING ASN B 146 ASN GLYCOSYLATION SITE MODRES 1ING ASN B 200 ASN GLYCOSYLATION SITE MODRES 1ING ASN B 234 ASN GLYCOSYLATION SITE MODRES 1ING THR B 455 THR GLYCOSYLATION SITE
HET NAG A 472 27 HET NAG A 473 28 HET NAG A 474 26 HET NAG A 475 27 HET BMA A 476 22 HET FUL A 477 21 HET NAG A 478 26 HET NAG A 479 27 HET BMA A 480 21 HET MAN A 481 21 HET MAN A 482 22 HET MAN A 483 22 HET NAG A 484 27 HET NAG A 485 28 HET NAG B 472 27 HET NAG B 473 28 HET NAG B 474 26 HET NAG B 475 27 HET BMA B 476 22 HET FUC B 477 21 HET NAG B 478 26 HET NAG B 479 27 HET BMA B 480 21 HET MAN B 481 21 HET MAN B 482 22 HET MAN B 483 22 HET NAG B 484 27 HET NAG B 485 28 HET CA A 470 1 HET CA B 470 1 HET ST5 A 471 23 HET ST5 B 471 23
HETNAM NAG N-ACETYL-D-GLUCOSAMINE HETNAM BMA BETA-D-MANNOSE HETNAM FUL BETA-L-FUCOSE HETNAM MAN ALPHA-D-MANNOSE HETNAM FUC ALPHA-L-FUCOSE HETNAM CA CALCIUM ION HETNAM ST5 4-(ACETYLAMINO)-3-[(HYDROXYACETYL)AMINO]BENZOIC ACID
HETSYN FUL 6-DEOXY-BETA-L-GALACTOSE
FORMUL 3 NAG 16(C8 H15 N O6) FORMUL 4 BMA 4(C6 H12 O6) FORMUL 4 FUL C6 H12 O5 FORMUL 5 MAN 6(C6 H12 O6) FORMUL 8 FUC C6 H12 O5 FORMUL 11 CA 2(CA 2+) FORMUL 13 ST5 2(C11 H12 N2 O5) FORMUL 15 HOH *250(H2 O)
HELIX 1 1 SER A 105 ALA A 110 1 6 HELIX 2 2 LYS A 143 SER A 145 5 3 HELIX 3 3 SER B 105 ALA B 110 1 6 HELIX 4 4 LYS B 143 SER B 145 5 3
SHEET 1 A 3 THR A 157 GLU A 162 0 SHEET 2 A 3 CYS A 129 GLY A 135 -1 N GLY A 135 O THR A 157 SHEET 3 A 3 THR A 117 CYS A 124 -1 N SER A 123 O TYR A 130 SHEET 1 B 4 SER A 180 HIS A 184 0 SHEET 2 B 4 TRP A 189 GLY A 196 -1 N VAL A 192 O SER A 181 SHEET 3 B 4 ALA A 201 TYR A 207 -1 N ILE A 206 O HIS A 191 SHEET 4 B 4 ARG A 210 GLY A 216 -1 N ILE A 215 O ALA A 203 SHEET 1 C 4 VAL A 231 ILE A 233 0 SHEET 2 C 4 THR A 236 ASP A 243 -1 N THR A 238 O VAL A 231 SHEET 3 C 4 ASP A 251 ILE A 257 -1 N ILE A 257 O CYS A 237 SHEET 4 C 4 ILE A 265 PRO A 267 -1 N SER A 266 O ILE A 254 SHEET 1 D 4 SER A 279 ARG A 283 0 SHEET 2 D 4 GLY A 286 ILE A 290 -1 N ILE A 290 O SER A 279 SHEET 3 D 4 PRO A 301 ASN A 306 -1 N ILE A 305 O VAL A 287 SHEET 4 D 4 ILE A 312 TYR A 316 -1 N SER A 315 O VAL A 302 SHEET 1 E 4 TRP A 352 ASN A 356 0 SHEET 2 E 4 ASP A 359 ARG A 364 -1 N GLY A 363 O TRP A 352 SHEET 3 E 4 TYR A 374 VAL A 379 -1 N VAL A 379 O LEU A 360 SHEET 4 E 4 GLN A 395 VAL A 398 -1 N VAL A 398 O TYR A 374 SHEET 1 F 4 SER A 407 GLU A 413 0 SHEET 2 F 4 ILE A 418 GLY A 429 -1 N TYR A 423 O GLY A 408 SHEET 3 F 4 THR A 439 THR A 449 -1 N PHE A 446 O PHE A 422 SHEET 4 F 4 GLY A 96 LYS A 102 -1 N SER A 101 O VAL A 445 SHEET 1 G 3 THR B 157 GLU B 162 0 SHEET 2 G 3 CYS B 129 GLY B 135 -1 N GLY B 135 O THR B 157 SHEET 3 G 3 THR B 117 CYS B 124 -1 N SER B 123 O TYR B 130 SHEET 1 H 4 SER B 180 HIS B 184 0 SHEET 2 H 4 TRP B 189 GLY B 196 -1 N VAL B 192 O SER B 181 SHEET 3 H 4 ALA B 201 TYR B 207 -1 N ILE B 206 O HIS B 191 SHEET 4 H 4 ARG B 210 GLY B 216 -1 N ILE B 215 O ALA B 203 SHEET 1 I 4 VAL B 231 ILE B 233 0 SHEET 2 I 4 THR B 236 ASP B 243 -1 N THR B 238 O VAL B 231 SHEET 3 I 4 ASP B 251 ILE B 257 -1 N ILE B 257 O CYS B 237 SHEET 4 I 4 ILE B 265 PRO B 267 -1 N SER B 266 O ILE B 254 SHEET 1 J 4 SER B 279 ARG B 283 0 SHEET 2 J 4 GLY B 286 ILE B 290 -1 N ILE B 290 O SER B 279 SHEET 3 J 4 PRO B 301 ASN B 306 -1 N ILE B 305 O VAL B 287 SHEET 4 J 4 ILE B 312 TYR B 316 -1 N SER B 315 O VAL B 302 SHEET 1 K 4 TRP B 352 ASN B 356 0 SHEET 2 K 4 ASP B 359 ARG B 364 -1 N GLY B 363 O TRP B 352 SHEET 3 K 4 TYR B 374 VAL B 379 -1 N VAL B 379 O LEU B 360 SHEET 4 K 4 GLN B 395 VAL B 398 -1 N VAL B 398 O TYR B 374 SHEET 1 L 4 SER B 407 GLU B 413 0 SHEET 2 L 4 ILE B 418 GLY B 429 -1 N TYR B 423 O GLY B 408 SHEET 3 L 4 THR B 439 THR B 449 -1 N PHE B 446 O PHE B 422 SHEET 4 L 4 GLY B 96 LYS B 102 -1 N SER B 101 O VAL B 445
SSBOND 1 CYS A 92 CYS A 417 1555 1555 2.02 SSBOND 2 CYS A 124 CYS A 129 1555 1555 2.04 SSBOND 3 CYS A 175 CYS A 193 1555 1555 2.03 SSBOND 4 CYS A 183 CYS A 230 1555 1555 2.02 SSBOND 5 CYS A 232 CYS A 237 1555 1555 2.04 SSBOND 6 CYS A 278 CYS A 291 1555 1555 2.04 SSBOND 7 CYS A 280 CYS A 289 1555 1555 2.03 SSBOND 8 CYS A 318 CYS A 337 1555 1555 2.04 SSBOND 9 CYS A 421 CYS A 447 1555 1555 2.04 SSBOND 10 CYS B 92 CYS B 417 1555 1555 2.02 SSBOND 11 CYS B 124 CYS B 129 1555 1555 2.04 SSBOND 12 CYS B 175 CYS B 193 1555 1555 2.03 SSBOND 13 CYS B 183 CYS B 230 1555 1555 2.02 SSBOND 14 CYS B 232 CYS B 237 1555 1555 2.04 SSBOND 15 CYS B 278 CYS B 291 1555 1555 2.04 SSBOND 16 CYS B 280 CYS B 289 1555 1555 2.03 SSBOND 17 CYS B 318 CYS B 337 1555 1555 2.04 SSBOND 18 CYS B 421 CYS B 447 1555 1555 2.04
LINK C1 NAG A 472 ND2 ASN A 86 1555 1555 1.46 LINK O4 NAG A 472 C1 NAG A 473 1555 1555 1.45 LINK C1 NAG A 474 ND2 ASN A 146 1555 1555 1.47 LINK O4 NAG A 474 C1 NAG A 475 1555 1555 1.45 LINK O6 NAG A 474 C1 FUL A 477 1555 1555 1.44 LINK O4 NAG A 475 C1 BMA A 476 1555 1555 1.47 LINK C1 NAG A 478 ND2 ASN A 200 1555 1555 1.45 LINK O4 NAG A 478 C1 NAG A 479 1555 1555 1.48 LINK O6 NAG A 478 C1 MAN A 483 1555 1555 1.43 LINK O4 NAG A 479 C1 BMA A 480 1555 1555 1.45 LINK O3 BMA A 480 C1 MAN A 481 1555 1555 1.45 LINK O2 MAN A 481 C1 MAN A 482 1555 1555 1.42 LINK C1 NAG A 484 ND2 ASN A 234 1555 1555 1.47 LINK O4 NAG A 484 C1 NAG A 485 1555 1555 1.44 LINK CA CA A 470 O ASP A 293 1555 1555 1.73 LINK CA CA A 470 O GLY A 297 1555 1555 2.36 LINK CA CA A 470 O GLY A 345 1555 1555 2.06 LINK CA CA A 470 O GLN A 347 1555 1555 2.01 LINK CA CA A 470 OE1 GLN A 347 1555 1555 1.49 LINK C1 NAG B 472 ND2 ASN B 86 1555 1555 1.46 LINK O4 NAG B 472 C1 NAG B 473 1555 1555 1.45 LINK C1 NAG B 474 ND2 ASN B 146 1555 1555 1.47 LINK O4 NAG B 474 C1 NAG B 475 1555 1555 1.45 LINK O6 NAG B 474 C1 FUC B 477 1555 1555 1.44 LINK O4 NAG B 475 C1 BMA B 476 1555 1555 1.47 LINK C1 NAG B 478 ND2 ASN B 200 1555 1555 1.45 LINK O4 NAG B 478 C1 NAG B 479 1555 1555 1.48 LINK O6 NAG B 478 C1 MAN B 483 1555 1555 1.43 LINK O4 NAG B 479 C1 BMA B 480 1555 1555 1.45 LINK O3 BMA B 480 C1 MAN B 481 1555 1555 1.45 LINK O2 MAN B 481 C1 MAN B 482 1555 1555 1.42 LINK C1 NAG B 484 ND2 ASN B 234 1555 1555 1.47 LINK O4 NAG B 484 C1 NAG B 485 1555 1555 1.44 LINK CA CA B 470 O ASP B 293 1555 1555 1.73 LINK CA CA B 470 O GLY B 297 1555 1555 2.36 LINK CA CA B 470 O GLY B 345 1555 1555 2.06 LINK CA CA B 470 O GLN B 347 1555 1555 2.01 LINK CA CA B 470 OE1 GLN B 347 1555 1555 1.49 LINK OG1 THR B 455 C6 NAG A 478 1555 1555 1.65 LINK CA CA A 470 OD2 ASP A 324 1555 1555 3.28 LINK C4 FUL A 477 C6 MAN A 481 1555 3654 1.63 LINK C5 FUL A 477 C6 MAN A 481 1555 3654 1.66 LINK C4 FUL A 477 C6 MAN A 481 3654 1555 1.63 LINK C5 FUL A 477 C6 MAN A 481 3654 1555 1.66 LINK OG1 THR B 455 O5 NAG A 478 1555 1555 1.91 LINK O GLY B 456 O3 MAN A 483 1555 1555 1.34 LINK C GLY B 456 O3 MAN A 483 1555 1555 2.02 LINK CA CA B 470 OD2 ASP B 324 1555 1555 3.28 LINK O5 NAG B 478 OG1 THR A 455 1555 4555 1.91 LINK C6 NAG B 478 OG1 THR A 455 1555 4555 1.65 LINK O3 MAN B 483 C GLY A 456 1555 4555 2.02 LINK O3 MAN B 483 O GLY A 456 1555 4555 1.34
CISPEP 1 TYR A 284 PRO A 285 0 -0.82 CISPEP 2 THR A 325 PRO A 326 0 0.87 CISPEP 3 TYR B 284 PRO B 285 0 -0.82 CISPEP 4 THR B 325 PRO B 326 0 0.87
SITE 1 CAA 11 ARG A 118 GLU A 119 ASP A 151 ARG A 152 SITE 2 CAA 11 TRP A 178 ILE A 222 ARG A 224 GLU A 276 SITE 3 CAA 11 ARG A 292 ARG A 371 TYR A 406 SITE 1 CAB 11 ARG B 118 GLU B 119 ASP B 151 ARG B 152 SITE 2 CAB 11 TRP B 178 ILE B 222 ARG B 224 GLU B 276 SITE 3 CAB 11 ARG B 292 ARG B 371 TYR B 406 SITE 1 AC1 5 ASN A 86 SER A 88 TYR A 284 NAG A 473 SITE 2 AC1 5 NAG A 485 SITE 1 AC2 1 NAG A 472 SITE 1 AC3 4 ASN A 146 TRP A 437 NAG A 475 FUL A 477 SITE 1 AC4 2 NAG A 474 BMA A 476 SITE 1 AC5 1 NAG A 475 SITE 1 AC6 2 NAG A 474 MAN A 481 SITE 1 AC7 8 ASP A 197 ASN A 200 NAG A 479 MAN A 483 SITE 2 AC7 8 TYR B 453 GLY B 454 THR B 455 HOH B 490 SITE 1 AC8 3 NAG A 478 BMA A 480 MAN A 483 SITE 1 AC9 3 NAG A 479 MAN A 481 MAN A 483 SITE 1 BC1 3 FUL A 477 BMA A 480 MAN A 482 SITE 1 BC2 2 MAN A 481 ASN B 463 SITE 1 BC3 8 ASP A 197 NAG A 478 NAG A 479 BMA A 480 SITE 2 BC3 8 VAL B 396 THR B 455 GLY B 456 SER B 457 SITE 1 BC4 2 ASN A 234 NAG A 485 SITE 1 BC5 2 NAG A 472 NAG A 484 SITE 1 BC6 5 ASN B 86 SER B 88 TYR B 284 NAG B 473 SITE 2 BC6 5 NAG B 485 SITE 1 BC7 1 NAG B 472 SITE 1 BC8 4 ASN B 146 TRP B 437 NAG B 475 FUC B 477 SITE 1 BC9 2 NAG B 474 BMA B 476 SITE 1 CC1 1 NAG B 475 SITE 1 CC2 1 NAG B 474 SITE 1 CC3 8 TYR A 453 GLY A 454 THR A 455 ASP B 197 SITE 2 CC3 8 ASN B 200 NAG B 479 MAN B 483 HOH B 518 SITE 1 CC4 3 NAG B 478 BMA B 480 MAN B 483 SITE 1 CC5 3 NAG B 479 MAN B 481 MAN B 483 SITE 1 CC6 2 BMA B 480 MAN B 482 SITE 1 CC7 1 MAN B 481 SITE 1 CC8 8 VAL A 396 THR A 455 GLY A 456 SER A 457 SITE 2 CC8 8 ASP B 197 NAG B 478 NAG B 479 BMA B 480 SITE 1 CC9 2 ASN B 234 NAG B 485 SITE 1 DC1 2 NAG B 472 NAG B 484 SITE 1 DC2 5 ASP A 293 GLY A 297 ASP A 324 GLY A 345 SITE 2 DC2 5 GLN A 347 SITE 1 DC3 5 ASP B 293 GLY B 297 ASP B 324 GLY B 345 SITE 2 DC3 5 GLN B 347 SITE 1 DC4 10 ARG A 118 ASP A 151 ARG A 152 ALA A 246 SITE 2 DC4 10 GLU A 276 ARG A 292 ASN A 294 ARG A 371 SITE 3 DC4 10 TYR A 406 HOH A 571 SITE 1 DC5 10 ARG B 118 ASP B 151 ARG B 152 ALA B 246 SITE 2 DC5 10 GLU B 276 ARG B 292 ASN B 294 ARG B 371 SITE 3 DC5 10 TYR B 406 HOH B 583
CRYST1 119.420 139.060 139.620 90.00 90.00 90.00 C 2 2 21 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008374 0.000000 0.000000 0.00000
SCALE2 0.000000 0.007191 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007162 0.00000