10 20 30 40 50 60 70 80 1IKP - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 04-MAY-01 1IKP
TITLE PSEUDOMONAS AERUGINOSA EXOTOXIN A, P201Q, W281A MUTANT
COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXOTOXIN A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NAD-DEPENDENT ADP-RIBOSYLTRANSFERASE; COMPND 5 EC: 2.4.2.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: PE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMOA1A2VK352 F+ T
KEYWDS ALL 3 EXOTOXIN A DOMAINS, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR D.B.MCKAY,J.E.WEDEKIND,C.B.TRAME
REVDAT 3 13-JUL-11 1IKP 1 SHEET REMARK REVDAT 2 24-FEB-09 1IKP 1 VERSN REVDAT 1 12-DEC-01 1IKP 0
JRNL AUTH J.E.WEDEKIND,C.B.TRAME,M.DORYWALSKA,P.KOEHL,T.M.RASCHKE, JRNL AUTH 2 M.MCKEE,D.FITZGERALD,R.J.COLLIER,D.B.MCKAY JRNL TITL REFINED CRYSTALLOGRAPHIC STRUCTURE OF PSEUDOMONAS AERUGINOSA JRNL TITL 2 EXOTOXIN A AND ITS IMPLICATIONS FOR THE MOLECULAR MECHANISM JRNL TITL 3 OF TOXICITY JRNL REF J.MOL.BIOL. V. 314 823 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11734000 JRNL DOI 10.1006/JMBI.2001.5195
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.J.COLLIER,D.B.MCKAY REMARK 1 TITL CRYSTALLIZATION OF EXOTOXIN A FROM PSEUDOMONAS AERUGINOSA REMARK 1 REF J.MOL.BIOL. V. 157 413 1982 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH V.S.ALLURED,R.J.COLLIER,S.F.CARROLL,D.B.MCKAY REMARK 1 TITL STRUCTURE OF EXOTOXIN A OF PSEUDOMONAS AERUGINOSA AT REMARK 1 TITL 2 3.0-ANGSTROM RESOLUTION REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 83 1320 1986 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 3 REMARK 1 AUTH B.J.BRANDHUBER,V.S.ALLURED,T.G.FALBEL,D.B.MCKAY REMARK 1 TITL MAPPING THE ENZYMATIC ACTIVE SITE OF PSEUDOMONAS AERUGINOSA REMARK 1 TITL 2 EXOTOXIN A. REMARK 1 REF PROTEINS V. 3 146 1988 REMARK 1 REFN ISSN 0887-3585 REMARK 1 PMID 3151219 REMARK 1 DOI 10.1002/PROT.340030303 REMARK 1 REFERENCE 4 REMARK 1 AUTH M.LI,F.DYDA,I.BENHAR,I.PASTAN,D.R.DAVIES REMARK 1 TITL THE CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA EXOTOXIN REMARK 1 TITL 2 DOMAIN III WITH NICOTINAMIDE AND AMP: CONFORMATIONAL REMARK 1 TITL 3 DIFFERENCES WITH THE INTACT EXOTOXIN REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 92 9308 1995 REMARK 1 REFN ISSN 0027-8424
REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 12268844.200 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.2 REMARK 3 NUMBER OF REFLECTIONS : 108126 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 10852 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.52 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 10158 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1105 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.009 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4582 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.60000 REMARK 3 B22 (A**2) : 0.63000 REMARK 3 B33 (A**2) : 1.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.85000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM SIGMAA (A) : 0.11 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.14 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.50 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.07 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.820 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.820 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.010 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.680 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 45.27 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : CIS_PEPTIDE.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1IKP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAY-01. REMARK 100 THE RCSB ID CODE IS RCSB013369.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 116635 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 59.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.2 REMARK 200 DATA REDUNDANCY : 2.520 REMARK 200 R MERGE (I) : 0.03100 REMARK 200 R SYM (I) : 0.03100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 58.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.30 REMARK 200 R MERGE FOR SHELL (I) : 0.11700 REMARK 200 R SYM FOR SHELL (I) : 0.11700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: WILD TYPE EXOTOXIN A, 1.62A REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, SODIUM CHLORIDE, HEPES, PH REMARK 280 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 281.0K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.53500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 ALA A 179 REMARK 465 GLN A 180 REMARK 465 PRO A 181 REMARK 465 ARG A 182 REMARK 465 ARG A 183 REMARK 465 GLU A 184 REMARK 465 PRO A 607 REMARK 465 PRO A 608 REMARK 465 ARG A 609 REMARK 465 GLU A 610 REMARK 465 ASP A 611 REMARK 465 LEU A 612 REMARK 465 LYS A 613
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 606 CG CD CE NZ
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 13 -66.96 -98.54 REMARK 500 GLU A 50 -130.70 -112.76 REMARK 500 ALA A 55 64.85 -153.65 REMARK 500 ASP A 61 -142.24 51.11 REMARK 500 ARG A 147 -48.06 -136.45 REMARK 500 ASP A 238 41.04 -156.23 REMARK 500 PRO A 241 11.86 -58.49 REMARK 500 HIS A 266 63.40 62.59 REMARK 500 ALA A 376 176.81 -59.61 REMARK 500 ARG A 538 -108.20 -118.93 REMARK 500 LEU A 539 55.78 -92.04 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1200 DISTANCE = 5.13 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 703 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1039 O REMARK 620 2 ASN A 62 O 174.0 REMARK 620 3 HOH A 874 O 89.4 86.4 REMARK 620 4 HOH A 719 O 95.7 90.0 116.6 REMARK 620 5 LEU A 597 O 87.5 91.1 123.0 120.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 704 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1074 O REMARK 620 2 HOH A1105 O 91.9 REMARK 620 3 ASP A 54 O 87.5 113.2 REMARK 620 4 HOH A1214 O 176.4 87.3 96.0 REMARK 620 5 ASP A 69 O 97.8 164.0 80.0 82.2 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 704
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AER RELATED DB: PDB REMARK 900 DOMAIN III OF PSEUDOMONAS AERUGINOSA EXOTOXIN COMPLEXED REMARK 900 WITH -TAD REMARK 900 RELATED ID: 1DMA RELATED DB: PDB REMARK 900 DOMAIN III OF PSEUDOMONAS AERUGINOSA EXOTOXIN COMPLEXED REMARK 900 WITH NICOTINAMIDE AND AMP REMARK 900 RELATED ID: 1IKQ RELATED DB: PDB REMARK 900 PSEUDOMONAS AERUGINOSA EXOTOXIN A (DOMAIN I,II,III), WILD REMARK 900 TYPE
DBREF 1IKP A 1 613 UNP P11439 TOXA_PSEAE 26 638
SEQADV 1IKP GLN A 201 UNP P11439 PRO 226 ENGINEERED SEQADV 1IKP ALA A 281 UNP P11439 TRP 306 ENGINEERED SEQADV 1IKP ASN A 364 UNP P11439 SER 389 SEE REMARK 999 SEQADV 1IKP VAL A 407 UNP P11439 ILE 432 SEE REMARK 999 SEQADV 1IKP SER A 515 UNP P11439 GLY 540 SEE REMARK 999
SEQRES 1 A 613 ALA GLU GLU ALA PHE ASP LEU TRP ASN GLU CYS ALA LYS SEQRES 2 A 613 ALA CYS VAL LEU ASP LEU LYS ASP GLY VAL ARG SER SER SEQRES 3 A 613 ARG MET SER VAL ASP PRO ALA ILE ALA ASP THR ASN GLY SEQRES 4 A 613 GLN GLY VAL LEU HIS TYR SER MET VAL LEU GLU GLY GLY SEQRES 5 A 613 ASN ASP ALA LEU LYS LEU ALA ILE ASP ASN ALA LEU SER SEQRES 6 A 613 ILE THR SER ASP GLY LEU THR ILE ARG LEU GLU GLY GLY SEQRES 7 A 613 VAL GLU PRO ASN LYS PRO VAL ARG TYR SER TYR THR ARG SEQRES 8 A 613 GLN ALA ARG GLY SER TRP SER LEU ASN TRP LEU VAL PRO SEQRES 9 A 613 ILE GLY HIS GLU LYS PRO SER ASN ILE LYS VAL PHE ILE SEQRES 10 A 613 HIS GLU LEU ASN ALA GLY ASN GLN LEU SER HIS MET SER SEQRES 11 A 613 PRO ILE TYR THR ILE GLU MET GLY ASP GLU LEU LEU ALA SEQRES 12 A 613 LYS LEU ALA ARG ASP ALA THR PHE PHE VAL ARG ALA HIS SEQRES 13 A 613 GLU SER ASN GLU MET GLN PRO THR LEU ALA ILE SER HIS SEQRES 14 A 613 ALA GLY VAL SER VAL VAL MET ALA GLN ALA GLN PRO ARG SEQRES 15 A 613 ARG GLU LYS ARG TRP SER GLU TRP ALA SER GLY LYS VAL SEQRES 16 A 613 LEU CYS LEU LEU ASP GLN LEU ASP GLY VAL TYR ASN TYR SEQRES 17 A 613 LEU ALA GLN GLN ARG CYS ASN LEU ASP ASP THR TRP GLU SEQRES 18 A 613 GLY LYS ILE TYR ARG VAL LEU ALA GLY ASN PRO ALA LYS SEQRES 19 A 613 HIS ASP LEU ASP ILE LYS PRO THR VAL ILE SER HIS ARG SEQRES 20 A 613 LEU HIS PHE PRO GLU GLY GLY SER LEU ALA ALA LEU THR SEQRES 21 A 613 ALA HIS GLN ALA CYS HIS LEU PRO LEU GLU THR PHE THR SEQRES 22 A 613 ARG HIS ARG GLN PRO ARG GLY ALA GLU GLN LEU GLU GLN SEQRES 23 A 613 CYS GLY TYR PRO VAL GLN ARG LEU VAL ALA LEU TYR LEU SEQRES 24 A 613 ALA ALA ARG LEU SER TRP ASN GLN VAL ASP GLN VAL ILE SEQRES 25 A 613 ARG ASN ALA LEU ALA SER PRO GLY SER GLY GLY ASP LEU SEQRES 26 A 613 GLY GLU ALA ILE ARG GLU GLN PRO GLU GLN ALA ARG LEU SEQRES 27 A 613 ALA LEU THR LEU ALA ALA ALA GLU SER GLU ARG PHE VAL SEQRES 28 A 613 ARG GLN GLY THR GLY ASN ASP GLU ALA GLY ALA ALA ASN SEQRES 29 A 613 ALA ASP VAL VAL SER LEU THR CYS PRO VAL ALA ALA GLY SEQRES 30 A 613 GLU CYS ALA GLY PRO ALA ASP SER GLY ASP ALA LEU LEU SEQRES 31 A 613 GLU ARG ASN TYR PRO THR GLY ALA GLU PHE LEU GLY ASP SEQRES 32 A 613 GLY GLY ASP VAL SER PHE SER THR ARG GLY THR GLN ASN SEQRES 33 A 613 TRP THR VAL GLU ARG LEU LEU GLN ALA HIS ARG GLN LEU SEQRES 34 A 613 GLU GLU ARG GLY TYR VAL PHE VAL GLY TYR HIS GLY THR SEQRES 35 A 613 PHE LEU GLU ALA ALA GLN SER ILE VAL PHE GLY GLY VAL SEQRES 36 A 613 ARG ALA ARG SER GLN ASP LEU ASP ALA ILE TRP ARG GLY SEQRES 37 A 613 PHE TYR ILE ALA GLY ASP PRO ALA LEU ALA TYR GLY TYR SEQRES 38 A 613 ALA GLN ASP GLN GLU PRO ASP ALA ARG GLY ARG ILE ARG SEQRES 39 A 613 ASN GLY ALA LEU LEU ARG VAL TYR VAL PRO ARG SER SER SEQRES 40 A 613 LEU PRO GLY PHE TYR ARG THR SER LEU THR LEU ALA ALA SEQRES 41 A 613 PRO GLU ALA ALA GLY GLU VAL GLU ARG LEU ILE GLY HIS SEQRES 42 A 613 PRO LEU PRO LEU ARG LEU ASP ALA ILE THR GLY PRO GLU SEQRES 43 A 613 GLU GLU GLY GLY ARG LEU GLU THR ILE LEU GLY TRP PRO SEQRES 44 A 613 LEU ALA GLU ARG THR VAL VAL ILE PRO SER ALA ILE PRO SEQRES 45 A 613 THR ASP PRO ARG ASN VAL GLY GLY ASP LEU ASP PRO SER SEQRES 46 A 613 SER ILE PRO ASP LYS GLU GLN ALA ILE SER ALA LEU PRO SEQRES 47 A 613 ASP TYR ALA SER GLN PRO GLY LYS PRO PRO ARG GLU ASP SEQRES 48 A 613 LEU LYS
HET CL A 701 1 HET CL A 702 1 HET NA A 703 1 HET NA A 704 1
HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION
FORMUL 2 CL 2(CL 1-) FORMUL 4 NA 2(NA 1+) FORMUL 6 HOH *540(H2 O)
HELIX 1 1 ASP A 6 CYS A 11 1 6 HELIX 2 2 ASP A 31 ASP A 36 1 6 HELIX 3 3 GLY A 138 ALA A 146 1 9 HELIX 4 4 TRP A 187 SER A 192 1 6 HELIX 5 5 GLY A 193 ASP A 203 5 11 HELIX 6 6 GLY A 204 GLN A 211 1 8 HELIX 7 7 ASP A 217 GLY A 222 1 6 HELIX 8 8 GLY A 254 HIS A 266 1 13 HELIX 9 9 PRO A 268 ARG A 274 5 7 HELIX 10 10 ALA A 281 CYS A 287 1 7 HELIX 11 11 CYS A 287 ALA A 301 1 15 HELIX 12 12 SER A 304 ASN A 306 5 3 HELIX 13 13 GLN A 307 SER A 318 1 12 HELIX 14 14 GLY A 322 GLN A 332 1 11 HELIX 15 15 GLN A 332 ARG A 352 1 21 HELIX 16 16 ASP A 358 ALA A 363 1 6 HELIX 17 17 PRO A 382 GLY A 386 5 5 HELIX 18 18 THR A 396 PHE A 400 5 5 HELIX 19 19 THR A 418 ARG A 432 1 15 HELIX 20 20 PHE A 443 GLY A 453 1 11 HELIX 21 21 ASP A 463 ARG A 467 5 5 HELIX 22 22 ASP A 474 GLY A 480 1 7 HELIX 23 23 SER A 506 PRO A 509 5 4 HELIX 24 24 GLU A 522 GLY A 532 1 11 HELIX 25 25 GLY A 557 ARG A 563 1 7 HELIX 26 26 ASP A 583 ILE A 587 5 5 HELIX 27 27 PRO A 588 ALA A 593 1 6
SHEET 1 A13 ALA A 14 ASP A 18 0 SHEET 2 A13 THR A 164 MET A 176 -1 O LEU A 165 N LEU A 17 SHEET 3 A13 ILE A 224 GLY A 230 -1 O ILE A 224 N MET A 176 SHEET 4 A13 THR A 164 MET A 176 -1 O VAL A 172 N LEU A 228 SHEET 5 A13 GLN A 40 LEU A 49 -1 N VAL A 42 O VAL A 175 SHEET 6 A13 TRP A 97 GLY A 106 -1 O TRP A 97 N LEU A 49 SHEET 7 A13 ASN A 112 LEU A 120 -1 O LYS A 114 N LEU A 102 SHEET 8 A13 LEU A 126 MET A 129 -1 N SER A 127 O GLU A 119 SHEET 9 A13 ASN A 112 LEU A 120 -1 N GLU A 119 O HIS A 128 SHEET 10 A13 ILE A 132 GLU A 136 -1 N TYR A 133 O VAL A 115 SHEET 11 A13 SER A 245 LEU A 248 1 O SER A 245 N ILE A 132 SHEET 12 A13 VAL A 367 THR A 371 -1 N VAL A 367 O LEU A 248 SHEET 13 A13 LEU A 389 ASN A 393 1 O LEU A 389 N VAL A 368 SHEET 1 B 6 ARG A 24 SER A 29 0 SHEET 2 B 6 ASP A 148 ALA A 155 -1 O ALA A 149 N MET A 28 SHEET 3 B 6 LEU A 56 ILE A 60 -1 N LYS A 57 O ARG A 154 SHEET 4 B 6 LEU A 64 SER A 68 -1 O LEU A 64 N ILE A 60 SHEET 5 B 6 THR A 72 GLY A 78 -1 N ARG A 74 O THR A 67 SHEET 6 B 6 VAL A 85 THR A 90 -1 N VAL A 85 O GLY A 78 SHEET 1 C 3 TYR A 434 THR A 442 0 SHEET 2 C 3 ALA A 497 PRO A 504 -1 N ALA A 497 O THR A 442 SHEET 3 C 3 VAL A 565 PRO A 575 -1 O VAL A 565 N TYR A 502 SHEET 1 D 4 PHE A 469 ILE A 471 0 SHEET 2 D 4 LEU A 552 LEU A 556 -1 N THR A 554 O ILE A 471 SHEET 3 D 4 ALA A 541 PRO A 545 -1 O ILE A 542 N ILE A 555 SHEET 4 D 4 PHE A 511 ARG A 513 1 N TYR A 512 O ALA A 541
SSBOND 1 CYS A 11 CYS A 15 1555 1555 2.05 SSBOND 2 CYS A 197 CYS A 214 1555 1555 2.05 SSBOND 3 CYS A 265 CYS A 287 1555 1555 2.03 SSBOND 4 CYS A 372 CYS A 379 1555 1555 2.04
LINK NA NA A 703 O HOH A1039 1555 1555 2.40 LINK NA NA A 703 O ASN A 62 1555 1555 2.42 LINK NA NA A 703 O HOH A 874 1555 1555 2.27 LINK NA NA A 703 O HOH A 719 1555 1555 2.25 LINK NA NA A 704 O HOH A1074 1555 1555 2.53 LINK NA NA A 704 O HOH A1105 1555 1555 2.31 LINK NA NA A 704 O ASP A 54 1555 1555 2.39 LINK NA NA A 704 O HOH A1214 1555 1555 2.40 LINK NA NA A 703 O LEU A 597 1555 1455 2.19 LINK O ASP A 69 NA NA A 704 1555 1555 2.76
CISPEP 1 LEU A 535 PRO A 536 0 1.28
SITE 1 AC1 2 ARG A 154 ARG A 505 SITE 1 AC2 2 ASP A 589 LYS A 590 SITE 1 AC3 5 ASN A 62 LEU A 597 HOH A 719 HOH A 874 SITE 2 AC3 5 HOH A1039 SITE 1 AC4 5 ASP A 54 ASP A 69 HOH A1074 HOH A1105 SITE 2 AC4 5 HOH A1214
CRYST1 59.910 99.070 58.630 90.00 97.34 90.00 P 1 21 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.016692 0.000000 0.002150 0.00000
SCALE2 0.000000 0.010094 0.000000 0.00000
SCALE3 0.000000 0.000000 0.017197 0.00000