10 20 30 40 50 60 70 80 1ICA - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ANTIBACTERIAL PROTEIN 16-DEC-94 1ICA
TITLE REFINED THREE-DIMENSIONAL STRUCTURE OF INSECT DEFENSIN A
COMPND MOL_ID: 1; COMPND 2 MOLECULE: INSECT DEFENSIN A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROTOPHORMIA TERRAENOVAE; SOURCE 3 ORGANISM_TAXID: 34676
KEYWDS ANTIBACTERIAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR B.CORNET,J.M.BONMATIN,M.PTAK,F.VOVELLE
REVDAT 3 24-FEB-09 1ICA 1 VERSN REVDAT 2 01-APR-03 1ICA 1 JRNL REVDAT 1 10-JUL-95 1ICA 0
JRNL AUTH B.CORNET,J.M.BONMATIN,C.HETRU,J.A.HOFFMANN,M.PTAK, JRNL AUTH 2 F.VOVELLE JRNL TITL REFINED THREE-DIMENSIONAL SOLUTION STRUCTURE OF JRNL TITL 2 INSECT DEFENSIN A. JRNL REF STRUCTURE V. 3 435 1995 JRNL REFN ISSN 0969-2126 JRNL PMID 7663941 JRNL DOI 10.1016/S0969-2126(01)00177-0
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1ICA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 HIS A 13 NE2 HIS A 13 CD2 -0.066 REMARK 500 1 HIS A 19 NE2 HIS A 19 CD2 -0.066 REMARK 500 2 HIS A 13 NE2 HIS A 13 CD2 -0.069 REMARK 500 3 HIS A 13 NE2 HIS A 13 CD2 -0.067 REMARK 500 4 HIS A 13 NE2 HIS A 13 CD2 -0.068 REMARK 500 5 HIS A 13 NE2 HIS A 13 CD2 -0.066 REMARK 500 5 HIS A 19 NE2 HIS A 19 CD2 -0.066 REMARK 500 6 HIS A 19 NE2 HIS A 19 CD2 -0.066 REMARK 500 7 HIS A 13 NE2 HIS A 13 CD2 -0.067 REMARK 500 9 HIS A 13 NE2 HIS A 13 CD2 -0.069 REMARK 500 10 HIS A 13 NE2 HIS A 13 CD2 -0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 39 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 2 ARG A 26 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 3 CYS A 3 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 3 CYS A 16 CA - CB - SG ANGL. DEV. = 9.8 DEGREES REMARK 500 3 CYS A 36 CA - CB - SG ANGL. DEV. = 9.2 DEGREES REMARK 500 4 CYS A 36 CA - CB - SG ANGL. DEV. = 7.8 DEGREES REMARK 500 7 CYS A 3 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 8 CYS A 16 CA - CB - SG ANGL. DEV. = 9.3 DEGREES REMARK 500 8 CYS A 36 CA - CB - SG ANGL. DEV. = 9.4 DEGREES REMARK 500 8 ARG A 39 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 9 CYS A 30 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 10 CYS A 30 CA - CB - SG ANGL. DEV. = 7.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 2 -169.78 -119.92 REMARK 500 1 ASP A 4 -122.30 -121.08 REMARK 500 1 LEU A 6 -68.87 73.42 REMARK 500 1 THR A 9 54.46 -119.64 REMARK 500 1 ILE A 11 -49.55 -17.11 REMARK 500 1 SER A 14 -51.90 -17.66 REMARK 500 2 LEU A 6 -82.49 1.53 REMARK 500 2 THR A 9 76.56 -119.73 REMARK 500 2 ASN A 12 113.88 85.60 REMARK 500 2 ARG A 26 20.99 -147.09 REMARK 500 3 CYS A 3 -64.09 -121.43 REMARK 500 3 ASP A 4 -163.05 43.91 REMARK 500 3 THR A 9 50.29 -102.83 REMARK 500 3 ILE A 11 -13.74 -37.65 REMARK 500 3 ASN A 12 74.97 11.16 REMARK 500 3 HIS A 13 46.24 -93.60 REMARK 500 3 ARG A 26 31.56 -142.10 REMARK 500 4 LEU A 5 63.66 -6.15 REMARK 500 4 ILE A 11 -46.31 -27.85 REMARK 500 4 ASN A 12 96.86 114.33 REMARK 500 5 ASP A 4 175.18 122.18 REMARK 500 5 LEU A 5 80.01 -1.06 REMARK 500 5 ASN A 12 -48.70 81.86 REMARK 500 5 HIS A 13 -171.70 75.77 REMARK 500 5 SER A 14 -46.55 86.66 REMARK 500 6 THR A 2 -159.58 -113.94 REMARK 500 6 LEU A 5 69.09 12.92 REMARK 500 6 ASN A 12 82.26 -16.38 REMARK 500 6 HIS A 13 52.04 -102.53 REMARK 500 6 LYS A 33 -43.33 122.46 REMARK 500 7 LEU A 5 48.45 24.29 REMARK 500 7 SER A 7 108.04 126.51 REMARK 500 7 THR A 9 59.42 29.93 REMARK 500 7 ILE A 11 -49.33 -13.72 REMARK 500 7 ASN A 12 -60.84 87.09 REMARK 500 7 HIS A 13 175.81 83.10 REMARK 500 7 SER A 14 -52.28 76.80 REMARK 500 7 ARG A 26 38.69 -141.23 REMARK 500 8 ASP A 4 -106.37 -129.86 REMARK 500 8 LEU A 5 62.04 -116.55 REMARK 500 8 ASN A 12 40.47 32.31 REMARK 500 8 SER A 14 -42.91 111.65 REMARK 500 9 CYS A 3 -164.83 -112.82 REMARK 500 9 LEU A 5 59.16 121.90 REMARK 500 9 THR A 9 75.64 -117.30 REMARK 500 9 ASN A 12 128.91 69.34 REMARK 500 9 SER A 14 -65.28 -22.16 REMARK 500 9 ALA A 17 6.23 -64.29 REMARK 500 9 ALA A 18 -58.01 -121.96 REMARK 500 9 TYR A 29 -166.91 -120.28 REMARK 500 9 LYS A 33 -45.48 -28.61 REMARK 500 10 CYS A 3 75.85 -105.26 REMARK 500 10 LEU A 6 -90.01 -128.21 REMARK 500 10 ILE A 11 -23.21 -39.46 REMARK 500 10 ASN A 12 61.70 20.06 REMARK 500 10 HIS A 13 -38.44 -38.40 REMARK 500 10 SER A 14 6.11 56.67 REMARK 500 10 LYS A 33 -45.73 -29.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 23 0.31 SIDE_CHAIN REMARK 500 1 ARG A 26 0.26 SIDE_CHAIN REMARK 500 1 ARG A 39 0.26 SIDE_CHAIN REMARK 500 2 ARG A 23 0.29 SIDE_CHAIN REMARK 500 2 ARG A 26 0.21 SIDE_CHAIN REMARK 500 2 ARG A 39 0.25 SIDE_CHAIN REMARK 500 3 ARG A 23 0.31 SIDE_CHAIN REMARK 500 3 ARG A 26 0.31 SIDE_CHAIN REMARK 500 3 ARG A 39 0.32 SIDE_CHAIN REMARK 500 4 ARG A 23 0.32 SIDE_CHAIN REMARK 500 4 ARG A 26 0.30 SIDE_CHAIN REMARK 500 4 ARG A 39 0.29 SIDE_CHAIN REMARK 500 5 ARG A 23 0.30 SIDE_CHAIN REMARK 500 5 ARG A 26 0.31 SIDE_CHAIN REMARK 500 5 ARG A 39 0.18 SIDE_CHAIN REMARK 500 6 ARG A 23 0.31 SIDE_CHAIN REMARK 500 6 ARG A 26 0.24 SIDE_CHAIN REMARK 500 6 ARG A 39 0.27 SIDE_CHAIN REMARK 500 7 ARG A 23 0.32 SIDE_CHAIN REMARK 500 7 ARG A 26 0.29 SIDE_CHAIN REMARK 500 7 ARG A 39 0.31 SIDE_CHAIN REMARK 500 8 ARG A 23 0.31 SIDE_CHAIN REMARK 500 8 ARG A 26 0.27 SIDE_CHAIN REMARK 500 8 ARG A 39 0.12 SIDE_CHAIN REMARK 500 9 ARG A 23 0.30 SIDE_CHAIN REMARK 500 9 ARG A 26 0.31 SIDE_CHAIN REMARK 500 9 ARG A 39 0.29 SIDE_CHAIN REMARK 500 10 ARG A 23 0.32 SIDE_CHAIN REMARK 500 10 ARG A 26 0.25 SIDE_CHAIN REMARK 500 10 ARG A 39 0.24 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1ICA A 1 40 UNP P10891 DEFI_PROTE 55 94
SEQRES 1 A 40 ALA THR CYS ASP LEU LEU SER GLY THR GLY ILE ASN HIS SEQRES 2 A 40 SER ALA CYS ALA ALA HIS CYS LEU LEU ARG GLY ASN ARG SEQRES 3 A 40 GLY GLY TYR CYS ASN GLY LYS GLY VAL CYS VAL CYS ARG SEQRES 4 A 40 ASN
HELIX 1 H1 ALA A 15 ARG A 23 1 9
SHEET 1 S1 2 GLY A 27 ASN A 31 0 SHEET 2 S1 2 VAL A 35 ARG A 39 -1
SSBOND 1 CYS A 3 CYS A 30 1555 1555 2.02 SSBOND 2 CYS A 16 CYS A 36 1555 1555 2.02 SSBOND 3 CYS A 20 CYS A 38 1555 1555 2.02
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000