10 20 30 40 50 60 70 80 1IC3 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 30-MAR-01 1IC3
TITLE THEORETICAL MODEL OF S.CEREVISIAE CAP 0 (MRNA:GUANINE-N7) TITLE 2 METHYLTRANSFERASE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABD1 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MRNA (GUANINE-N7-)-METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.56
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST
KEYWDS CAP METHYLTRANSFERASE, GUANINE-N7 METHYLTRASNFERASE, MRNA KEYWDS 2 METHYLTRASNFERASE, RNA MODIFICATION, CAPPING, METHYLATION
EXPDTA THEORETICAL MODEL
AUTHOR J.M.BUJNICKI,M.FEDER,M.RADLINSKA,L.RYCHLEWSKI
REVDAT 1 22-AUG-01 1IC3 0
JRNL AUTH J.M.BUJNICKI,M.FEDER,M.RADLINSKA,L.RYCHLEWSKI JRNL TITL MRNA:GUANINE-N7 CAP METHYLTRANSFERASES: JRNL TITL 2 IDENTIFICATION OF NOVEL MEMBERS OF THE FAMILY, JRNL TITL 3 EVOLUTIONARY ANALYSIS, HOMOLOGY MODELING, AND JRNL TITL 4 ANALYSIS OF SEQUENCE-STRUCTURE-FUNCTION JRNL TITL 5 RELATIONSHIPS. JRNL REF BMC BIOINFORMATICS V. 2 2 2001 JRNL REFN UK ESSN 1471-2105
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1IC3 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-2001. REMARK 100 THE RCSB ID CODE IS RCSB013146.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: ENERGY MINIMIZATION. METHOD 1 : STEEPEST DESCENT CYCLES REMARK 220 1 : 200 CONSTRAINTS 1 : 25 / C-FACTORS METHOD 2 : REMARK 220 CONJUGATE GRADIENT CYCLES 2 : 300 CONSTRAINTS 2 : 2500 / REMARK 220 C-FACTORS; THIS MODEL IS BASED UPON THE COORDINATES OF: REMARK 220 1XVA
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 381 REMARK 465 LYS A 382 REMARK 465 TRP A 383 REMARK 465 ILE A 384 REMARK 465 GLU A 385 REMARK 465 ARG A 386 REMARK 465 PHE A 387 REMARK 465 SER A 388 REMARK 465 PRO A 389 REMARK 465 LYS A 390 REMARK 465 MET A 391 REMARK 465 ARG A 392 REMARK 465 GLU A 393 REMARK 465 GLY A 394 REMARK 465 LEU A 395 REMARK 465 GLN A 396 REMARK 465 ARG A 397 REMARK 465 SER A 398 REMARK 465 ASP A 399 REMARK 465 GLY A 400 REMARK 465 ARG A 401 REMARK 465 TYR A 402 REMARK 465 GLY A 403 REMARK 465 VAL A 404 REMARK 465 GLU A 405 REMARK 465 GLY A 406 REMARK 465 ASP A 407
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 259 CA GLU A 259 CB -0.123 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 179 CB - CG - CD1 ANGL. DEV. =-24.0 DEGREES REMARK 500 PRO A 242 CB - CA - C ANGL. DEV. = 20.7 DEGREES REMARK 500 TYR A 324 CA - C - O ANGL. DEV. =-18.2 DEGREES REMARK 500 TYR A 324 CA - C - N ANGL. DEV. = 19.0 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 145 -115.52 -163.72 REMARK 500 GLU A 260 -103.18 54.38 REMARK 500 ALA A 411 -33.45 53.78 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 242 CYS A 243 -34.03
DBREF 1IC3 A 140 424 UNP P32783 ABD1_YEAST 140 424
SEQRES 1 A 285 LEU SER PRO ILE ILE LYS LEU ARG ASN PHE ASN ASN ALA SEQRES 2 A 285 ILE LYS TYR MET LEU ILE ASP LYS TYR THR LYS PRO GLY SEQRES 3 A 285 ASP VAL VAL LEU GLU LEU GLY CYS GLY LYS GLY GLY ASP SEQRES 4 A 285 LEU ARG LYS TYR GLY ALA ALA GLY ILE SER GLN PHE ILE SEQRES 5 A 285 GLY ILE ASP ILE SER ASN ALA SER ILE GLN GLU ALA HIS SEQRES 6 A 285 LYS ARG TYR ARG SER MET ARG ASN LEU ASP TYR GLN VAL SEQRES 7 A 285 VAL LEU ILE THR GLY ASP CYS PHE GLY GLU SER LEU GLY SEQRES 8 A 285 VAL ALA VAL GLU PRO PHE PRO ASP CYS ARG PHE PRO CYS SEQRES 9 A 285 ASP ILE VAL SER THR GLN PHE CYS LEU HIS TYR ALA PHE SEQRES 10 A 285 GLU THR GLU GLU LYS ALA ARG ARG ALA LEU LEU ASN VAL SEQRES 11 A 285 ALA LYS SER LEU LYS ILE GLY GLY HIS PHE PHE GLY THR SEQRES 12 A 285 ILE PRO ASP SER GLU PHE ILE ARG TYR LYS LEU ASN LYS SEQRES 13 A 285 PHE PRO LYS GLU VAL GLU LYS PRO SER TRP GLY ASN SER SEQRES 14 A 285 ILE TYR LYS VAL THR PHE GLU ASN ASN SER TYR GLN LYS SEQRES 15 A 285 ASN ASP TYR GLU PHE THR SER PRO TYR GLY GLN MET TYR SEQRES 16 A 285 THR TYR TRP LEU GLU ASP ALA ILE ASP ASN VAL PRO GLU SEQRES 17 A 285 TYR VAL VAL PRO PHE GLU THR LEU ARG SER LEU ALA ASP SEQRES 18 A 285 GLU TYR GLY LEU GLU LEU VAL SER GLN MET PRO PHE ASN SEQRES 19 A 285 LYS PHE PHE VAL GLN GLU ILE PRO LYS TRP ILE GLU ARG SEQRES 20 A 285 PHE SER PRO LYS MET ARG GLU GLY LEU GLN ARG SER ASP SEQRES 21 A 285 GLY ARG TYR GLY VAL GLU GLY ASP GLU LYS GLU ALA ALA SEQRES 22 A 285 SER TYR PHE TYR THR MET PHE ALA PHE ARG LYS VAL
HELIX 1 1 ASN A 150 THR A 162 1 13 HELIX 2 2 GLY A 176 GLY A 186 1 11 HELIX 3 3 SER A 196 ARG A 211 1 16 HELIX 4 4 ASP A 223 PHE A 225 5 3 HELIX 5 5 GLY A 226 ALA A 232 1 7 HELIX 6 6 LEU A 252 PHE A 256 5 5 HELIX 7 7 GLU A 260 SER A 272 1 13 HELIX 8 8 ASP A 285 LEU A 293 1 9 HELIX 9 9 PRO A 351 ASP A 360 1 10
SHEET 1 A 7 VAL A 217 THR A 221 0 SHEET 2 A 7 PHE A 190 ASP A 194 1 O PHE A 190 N VAL A 218 SHEET 3 A 7 VAL A 168 GLU A 170 1 O VAL A 168 N ILE A 191 SHEET 4 A 7 ILE A 245 THR A 248 1 O ILE A 245 N LEU A 169 SHEET 5 A 7 HIS A 278 PRO A 284 1 O HIS A 278 N VAL A 246 SHEET 6 A 7 TYR A 416 PHE A 421 -1 N THR A 417 O ILE A 283 SHEET 7 A 7 LEU A 366 GLN A 369 -1 O VAL A 367 N ALA A 420 SHEET 1 B 2 VAL A 312 GLN A 320 0 SHEET 2 B 2 THR A 327 TYR A 336 -1 N SER A 328 O TYR A 319
CISPEP 1 SER A 188 GLN A 189 0 -1.95 CISPEP 2 GLU A 259 GLU A 260 0 7.03 CISPEP 3 ASP A 340 ALA A 341 0 -6.14
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000