1IBA - Header Asymmetric Unit

HEADER PHOSHPHOTRANSFERASE 23-MAR-96 1IBA

TITLE GLUCOSE PERMEASE (DOMAIN IIB), NMR, 11 STRUCTURES

COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE PERMEASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DOMAIN IIB; COMPND 5 EC: 2.7.1.69; COMPND 6 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: K-12, W3110; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PQBH; SOURCE 8 EXPRESSION_SYSTEM_GENE: PTSG

KEYWDS PHOSPHOTRANSFERASE SYSTEM, SUGAR TRANSPORT, TRANSFERASE, KEYWDS 2 PHOSPHORYLATION, TRANSMEMBRANE, INNER MEMBRANE, KEYWDS 3 PHOSHPHOTRANSFERASE

EXPDTA SOLUTION NMR

NUMMDL 11

AUTHOR M.EBERSTADT,S.G.GRDADOLNIK,G.GEMMECKER,H.KESSLER,A.BUHR, AUTHOR 2 B.ERNI

REVDAT 2 24-FEB-09 1IBA 1 VERSN REVDAT 1 14-OCT-96 1IBA 0

JRNL AUTH M.EBERSTADT,S.G.GRDADOLNIK,G.GEMMECKER,H.KESSLER, JRNL AUTH 2 A.BUHR,B.ERNI JRNL TITL SOLUTION STRUCTURE OF THE IIB DOMAIN OF THE JRNL TITL 2 GLUCOSE TRANSPORTER OF ESCHERICHIA COLI. JRNL REF BIOCHEMISTRY V. 35 11286 1996 JRNL REFN ISSN 0006-2960 JRNL PMID 8784182 JRNL DOI 10.1021/BI960492L

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.GOLIC GRDADOLNIK,M.EBERSTADT,G.GEMMECKER, REMARK 1 AUTH 2 H.KESSLER,A.BUHR,B.ERNI REMARK 1 TITL THE GLUCOSE TRANSPORTER OF ESCHERICHIA COLI. REMARK 1 TITL 2 ASSIGNMENT OF THE 1H, 13C AND 15N RESONANCES AND REMARK 1 TITL 3 IDENTIFICATION OF THE SECONDARY STRUCTURE OF THE REMARK 1 TITL 4 SOLUBLE IIB DOMAIN REMARK 1 REF EUR.J.BIOCHEM. V. 219 945 1994 REMARK 1 REFN ISSN 0014-2956 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.BUHR,K.FLUKIGER,B.ERNI REMARK 1 TITL THE GLUCOSE TRANSPORTER OF ESCHERICHIA COLI REMARK 1 REF J.BIOL.CHEM. V. 269 23437 1994 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 3 REMARK 1 AUTH M.MEINS,P.JENO,D.MULLER,W.J.RICHTER,J.P.ROSENBUSCH, REMARK 1 AUTH 2 B.ERNI REMARK 1 TITL CYSTEINE PHOSPHORYLATION OF THE GLUCOSE REMARK 1 TITL 2 TRANSPORTER OF ESCHERICHIA COLI REMARK 1 REF J.BIOL.CHEM. V. 268 11604 1993 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 4 REMARK 1 AUTH B.ERNI,B.ZANOLARI REMARK 1 TITL GLUCOSE-PERMEASE OF THE BACTERIAL REMARK 1 TITL 2 PHOSPHOTRANSFERASE SYSTEM. GENE CLONING, REMARK 1 TITL 3 OVERPRODUCTION, AND AMINO ACID SEQUENCE OF ENZYME REMARK 1 TITL 4 IIGLC REMARK 1 REF J.BIOL.CHEM. V. 261 16398 1986 REMARK 1 REFN ISSN 0021-9258

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DIANA 2.8 REMARK 3 AUTHORS : GUNTERT, BRAUN, WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1IBA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 11 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-11 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 LYS A 3 REMARK 465 ASN A 4 REMARK 465 GLU A 5 REMARK 465 ASP A 6 REMARK 465 ALA A 7 REMARK 465 LYS A 8 REMARK 465 ALA A 9 REMARK 465 THR A 10 REMARK 465 GLY A 11 REMARK 465 THR A 12 REMARK 465 SER A 13 REMARK 465 GLU A 14 REMARK 465 SER A 93 REMARK 465 ARG A 94 REMARK 465 SER A 95 REMARK 465 HIS A 96 REMARK 465 HIS A 97 REMARK 465 HIS A 98 REMARK 465 HIS A 99 REMARK 465 HIS A 100 REMARK 465 HIS A 101

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 LEU A 39 CB - CA - C ANGL. DEV. = 11.9 DEGREES REMARK 500 2 ARG A 89 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 PHE A 23 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 3 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 3 ARG A 40 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 3 ARG A 89 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 4 ARG A 38 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 4 LEU A 39 CB - CA - C ANGL. DEV. = 11.8 DEGREES REMARK 500 5 ARG A 89 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 7 ARG A 38 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 7 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 7 ARG A 89 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 8 PHE A 23 CB - CG - CD2 ANGL. DEV. = -5.1 DEGREES REMARK 500 8 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 9 PHE A 23 CB - CG - CD2 ANGL. DEV. = -5.0 DEGREES REMARK 500 9 ARG A 38 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 9 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 9 ARG A 40 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 10 ARG A 38 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 10 ARG A 40 CB - CG - CD ANGL. DEV. = 16.9 DEGREES REMARK 500 10 ARG A 40 CG - CD - NE ANGL. DEV. = 13.8 DEGREES REMARK 500 10 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 10 ARG A 89 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 11 PHE A 23 CB - CG - CD2 ANGL. DEV. = -5.2 DEGREES REMARK 500 11 PHE A 23 CB - CG - CD1 ANGL. DEV. = 4.8 DEGREES REMARK 500 11 ARG A 38 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 20 -36.99 -38.31 REMARK 500 1 ALA A 22 -19.70 -48.15 REMARK 500 1 PHE A 23 -53.86 -140.14 REMARK 500 1 ILE A 29 135.94 -32.05 REMARK 500 1 ASP A 33 65.74 -111.92 REMARK 500 1 ILE A 36 -63.23 -25.03 REMARK 500 1 LYS A 48 26.58 -150.74 REMARK 500 1 ALA A 59 -160.00 -112.81 REMARK 500 1 SER A 67 -33.59 127.07 REMARK 500 1 THR A 75 -74.59 53.62 REMARK 500 1 LYS A 76 54.75 -105.10 REMARK 500 2 ALA A 22 -16.66 -49.03 REMARK 500 2 PHE A 23 -52.78 -142.28 REMARK 500 2 LYS A 26 55.97 -95.18 REMARK 500 2 ILE A 29 152.18 -44.00 REMARK 500 2 ILE A 36 -94.70 -4.18 REMARK 500 2 ALA A 44 74.36 -104.87 REMARK 500 2 LYS A 48 -64.80 -164.59 REMARK 500 2 VAL A 49 177.31 42.63 REMARK 500 2 ALA A 59 -166.00 -110.56 REMARK 500 2 SER A 67 -39.46 130.74 REMARK 500 2 SER A 77 -34.08 -37.72 REMARK 500 3 PHE A 23 -52.84 -128.66 REMARK 500 3 ILE A 29 159.25 -20.67 REMARK 500 3 ILE A 36 -71.75 -30.43 REMARK 500 3 ASP A 45 76.03 -59.15 REMARK 500 3 LYS A 48 13.01 -140.35 REMARK 500 3 VAL A 49 132.75 -38.25 REMARK 500 3 ALA A 59 -162.17 -119.19 REMARK 500 3 ALA A 60 56.23 -151.08 REMARK 500 3 SER A 67 -29.14 120.82 REMARK 500 3 SER A 77 -39.91 -32.98 REMARK 500 4 ALA A 22 -13.83 -49.91 REMARK 500 4 PHE A 23 -48.17 -145.85 REMARK 500 4 ILE A 29 155.15 -13.98 REMARK 500 4 ILE A 36 -66.27 -24.99 REMARK 500 4 SER A 42 98.06 -69.10 REMARK 500 4 LYS A 48 26.01 -150.31 REMARK 500 4 ASP A 50 64.21 -102.89 REMARK 500 4 ALA A 59 -151.69 -105.48 REMARK 500 4 SER A 67 -24.28 117.35 REMARK 500 4 PHE A 73 50.04 -116.04 REMARK 500 4 THR A 75 -42.66 82.74 REMARK 500 4 LYS A 76 55.25 -148.78 REMARK 500 5 PHE A 23 -49.15 -132.29 REMARK 500 5 LYS A 26 57.42 -98.31 REMARK 500 5 ASN A 28 -9.47 -55.93 REMARK 500 5 ILE A 29 153.67 -44.79 REMARK 500 5 THR A 37 42.69 -144.21 REMARK 500 5 ASP A 45 -101.45 -21.12 REMARK 500 5 VAL A 46 17.07 49.05 REMARK 500 5 SER A 47 -76.64 -138.92 REMARK 500 5 ASP A 50 50.52 -98.20 REMARK 500 5 ALA A 52 -38.79 -37.22 REMARK 500 5 SER A 67 -16.36 114.54 REMARK 500 5 LYS A 76 30.78 84.98 REMARK 500 6 PHE A 23 -46.02 -133.35 REMARK 500 6 ILE A 29 151.81 -12.94 REMARK 500 6 THR A 30 -61.77 -104.03 REMARK 500 6 ILE A 36 -69.37 -26.19 REMARK 500 6 VAL A 41 57.67 -142.42 REMARK 500 6 ASP A 45 68.34 -68.98 REMARK 500 6 SER A 47 -85.02 -72.77 REMARK 500 6 ASP A 50 53.17 -95.19 REMARK 500 6 ALA A 59 -163.60 -103.26 REMARK 500 6 SER A 67 -26.89 119.19 REMARK 500 6 THR A 75 -113.18 36.50 REMARK 500 6 LYS A 76 62.01 -68.98 REMARK 500 7 ILE A 29 149.99 -6.60 REMARK 500 7 THR A 37 45.20 -146.74 REMARK 500 7 ASP A 45 -94.94 -44.61 REMARK 500 7 VAL A 46 19.96 42.33 REMARK 500 7 ASP A 50 66.13 -103.70 REMARK 500 7 ALA A 59 -148.14 -98.17 REMARK 500 7 ALA A 60 59.45 -160.86 REMARK 500 7 SER A 67 -24.12 120.71 REMARK 500 7 THR A 75 -49.56 -162.34 REMARK 500 7 LYS A 76 8.53 -61.53 REMARK 500 8 PHE A 23 -57.11 -129.58 REMARK 500 8 LYS A 26 85.68 -68.72 REMARK 500 8 ILE A 29 123.14 4.59 REMARK 500 8 THR A 30 -54.93 -125.19 REMARK 500 8 ILE A 36 -81.19 -33.67 REMARK 500 8 ASP A 45 76.37 -59.36 REMARK 500 8 VAL A 46 61.19 -100.97 REMARK 500 8 ALA A 59 -150.26 -125.81 REMARK 500 8 ALA A 60 58.50 -156.24 REMARK 500 8 SER A 67 -21.46 112.03 REMARK 500 8 PHE A 73 71.32 -116.76 REMARK 500 8 LYS A 76 49.67 -143.47 REMARK 500 9 PHE A 23 -55.88 -133.40 REMARK 500 9 ASN A 28 -18.66 -49.58 REMARK 500 9 ILE A 29 150.59 -35.89 REMARK 500 9 ASP A 45 -94.63 -33.74 REMARK 500 9 VAL A 46 13.57 43.36 REMARK 500 9 LYS A 48 -47.16 -172.77 REMARK 500 9 VAL A 49 136.54 -30.00 REMARK 500 9 ALA A 59 -150.57 -125.22 REMARK 500 9 ALA A 60 56.40 -160.91 REMARK 500 9 SER A 67 -31.30 123.59 REMARK 500 9 THR A 75 -60.44 61.50 REMARK 500 9 LYS A 76 -19.37 -44.22 REMARK 500 9 SER A 77 -56.86 -27.98 REMARK 500 10 LEU A 19 -73.17 -63.17 REMARK 500 10 VAL A 20 -34.81 -40.00 REMARK 500 10 LYS A 26 72.13 -117.19 REMARK 500 10 GLU A 27 -34.25 -34.73 REMARK 500 10 ILE A 29 142.82 -10.53 REMARK 500 10 THR A 30 -58.12 -130.18 REMARK 500 10 ASP A 33 78.92 -155.76 REMARK 500 10 VAL A 41 86.55 -158.18 REMARK 500 10 SER A 47 -83.66 -57.27 REMARK 500 10 VAL A 49 138.33 -33.85 REMARK 500 10 ASP A 50 49.85 -98.72 REMARK 500 10 ALA A 59 -153.37 -108.50 REMARK 500 10 SER A 67 -31.03 122.99 REMARK 500 10 THR A 75 -43.18 -148.98 REMARK 500 11 PHE A 23 -54.81 -130.37 REMARK 500 11 ILE A 29 155.48 -23.05 REMARK 500 11 THR A 30 -63.73 -97.66 REMARK 500 11 ILE A 36 -99.08 -10.10 REMARK 500 11 ASP A 45 79.55 -62.80 REMARK 500 11 VAL A 46 41.50 -103.54 REMARK 500 11 ASP A 50 57.86 15.62 REMARK 500 11 ALA A 59 -150.54 -124.23 REMARK 500 11 ALA A 60 44.52 -147.41 REMARK 500 11 SER A 67 -33.30 119.81 REMARK 500 11 SER A 77 -41.51 -29.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 PHE A 73 0.10 SIDE_CHAIN REMARK 500 7 TYR A 87 0.10 SIDE_CHAIN REMARK 500 8 PHE A 73 0.07 SIDE_CHAIN REMARK 500 11 PHE A 73 0.13 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: S1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: PHOSPHORYLATION SITE CYS 35.

DBREF 1IBA A 5 90 UNP P69786 PTGCB_ECOLI 391 476

SEQRES 1 A 101 MET PHE LYS ASN GLU ASP ALA LYS ALA THR GLY THR SER SEQRES 2 A 101 GLU MET ALA PRO ALA LEU VAL ALA ALA PHE GLY GLY LYS SEQRES 3 A 101 GLU ASN ILE THR ASN LEU ASP ALA CYS ILE THR ARG LEU SEQRES 4 A 101 ARG VAL SER VAL ALA ASP VAL SER LYS VAL ASP GLN ALA SEQRES 5 A 101 GLY LEU LYS LYS LEU GLY ALA ALA GLY VAL VAL VAL ALA SEQRES 6 A 101 GLY SER GLY VAL GLN ALA ILE PHE GLY THR LYS SER ASP SEQRES 7 A 101 ASN LEU LYS THR GLU MET ASP GLU TYR ILE ARG ASN PHE SEQRES 8 A 101 GLY SER ARG SER HIS HIS HIS HIS HIS HIS

HELIX 1 H1 ALA A 18 PHE A 23 1 6 HELIX 2 H2 ALA A 52 LEU A 57 1 6 HELIX 3 H3 LYS A 76 ASN A 90 1 15

SHEET 1 B1 4 THR A 30 CYS A 35 0 SHEET 2 B1 4 ARG A 38 VAL A 43 -1 O SER A 42 N ASN A 31 SHEET 3 B1 4 GLY A 68 PHE A 73 -1 O VAL A 69 N VAL A 41 SHEET 4 B1 4 GLY A 61 ALA A 65 -1 O VAL A 63 N GLN A 70

SITE 1 S1 1 CYS A 35

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000