10 20 30 40 50 60 70 80 1I8Y - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CYTOKINE 16-MAR-01 1I8Y
TITLE SEMI-AUTOMATIC STRUCTURE DETERMINATION OF THE CG1 3-30 TITLE 2 PEPTIDE BASED ON ARIA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GRANULIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINUS (RESIDUES 3-30); COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED BY SOURCE 4 SOLID PHASE SYNTHESIS. THE SEQUENCE OF THE PEPTIDE IS SOURCE 5 NATURALLY FOUND IN CYPRINUS CARPIO (CARP).
KEYWDS BETA-HAIRPIN STACK, CYTOKINE
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR W.F.VRANKEN,S.JAMES,H.P.J.BENNETT,F.NI
REVDAT 3 24-FEB-09 1I8Y 1 VERSN REVDAT 2 01-APR-03 1I8Y 1 JRNL REVDAT 1 17-APR-02 1I8Y 0
JRNL AUTH W.F.VRANKEN,S.JAMES,H.P.BENNETT,F.NI JRNL TITL SOLUTION STRUCTURES OF A 30-RESIDUE AMINO-TERMINAL JRNL TITL 2 DOMAIN OF THE CARP GRANULIN-1 PROTEIN AND ITS JRNL TITL 3 AMINO-TERMINALLY TRUNCATED 3-30 SUBFRAGMENT: JRNL TITL 4 IMPLICATIONS FOR THE CONFORMATIONAL STABILITY OF JRNL TITL 5 THE STACK OF TWO BETA-HAIRPINS. JRNL REF PROTEINS V. 47 14 2002 JRNL REFN ISSN 0887-3585 JRNL PMID 11870861 JRNL DOI 10.1002/PROT.10077.ABS
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.0 REMARK 3 AUTHORS : LINGE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NO NOE PEAKS WERE MANUALLY ASSIGNED REMARK 3 - CALCULATION IS BASED ON INITIAL NOE PEAK LISTS AND CHEMICAL REMARK 3 SHIFT ASSIGNMENTS COMBINED WITH AMBIGUOUS RESTRAINTS USED IN REMARK 3 ARIA.
REMARK 4 REMARK 4 1I8Y COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-01. REMARK 100 THE RCSB ID CODE IS RCSB013053.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 0.02 REMARK 210 PRESSURE : 1 ATM ATM REMARK 210 SAMPLE CONTENTS : ACETATE BUFFER; ACETATE BUFFER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.1, NMRVIEW 3.0 REMARK 210 METHOD USED : SEMI-AUTOMATED CALCULATION REMARK 210 BASED ON A SET OF ARIA RUNS. REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 2 57.46 -103.11 REMARK 500 1 ALA A 5 12.65 -148.34 REMARK 500 1 THR A 6 -50.79 -143.80 REMARK 500 1 ILE A 7 80.31 54.28 REMARK 500 1 PRO A 9 162.20 -48.68 REMARK 500 1 PRO A 26 20.41 -78.75 REMARK 500 1 PHE A 27 35.82 -140.41 REMARK 500 2 ASP A 3 114.64 -160.67 REMARK 500 2 ALA A 5 -49.86 -164.87 REMARK 500 2 ILE A 7 107.06 64.58 REMARK 500 3 CYS A 2 -162.04 -117.37 REMARK 500 3 ALA A 4 -19.90 -161.16 REMARK 500 3 ALA A 5 -38.11 -152.58 REMARK 500 3 THR A 6 -63.94 -94.38 REMARK 500 3 ILE A 7 124.30 64.78 REMARK 500 3 ASP A 10 -170.01 61.88 REMARK 500 4 ALA A 4 -151.39 54.40 REMARK 500 4 THR A 6 -72.59 -130.00 REMARK 500 4 ILE A 7 73.47 49.22 REMARK 500 4 PRO A 9 152.78 -44.98 REMARK 500 5 CYS A 2 108.32 -57.25 REMARK 500 5 ALA A 5 -26.61 -153.12 REMARK 500 5 ILE A 7 91.37 60.67 REMARK 500 5 PHE A 27 -179.06 61.44 REMARK 500 6 CYS A 2 4.85 -156.49 REMARK 500 6 ALA A 4 -71.56 -105.44 REMARK 500 6 ALA A 5 -57.73 -135.60 REMARK 500 6 THR A 6 -159.04 42.43 REMARK 500 6 ILE A 7 43.82 -141.07 REMARK 500 6 PRO A 9 170.83 -52.19 REMARK 500 6 PRO A 26 31.96 -80.33 REMARK 500 6 PHE A 27 40.88 -161.02 REMARK 500 7 CYS A 2 101.37 -52.37 REMARK 500 7 ALA A 4 -98.99 50.66 REMARK 500 7 ALA A 5 50.61 -113.55 REMARK 500 7 ILE A 7 87.25 35.08 REMARK 500 8 CYS A 2 104.39 -51.61 REMARK 500 8 THR A 6 -78.04 -137.03 REMARK 500 8 CYS A 8 165.78 59.98 REMARK 500 8 PRO A 9 -72.20 -49.77 REMARK 500 8 TYR A 19 -81.88 -75.45 REMARK 500 9 CYS A 2 -157.55 -154.91 REMARK 500 9 ALA A 4 -57.97 -156.87 REMARK 500 9 ALA A 5 115.33 -164.18 REMARK 500 9 THR A 6 -39.60 -162.29 REMARK 500 9 ASP A 10 -162.79 54.47 REMARK 500 10 CYS A 2 96.39 -48.20 REMARK 500 10 THR A 6 -95.66 -136.68 REMARK 500 10 ILE A 7 108.05 58.34 REMARK 500 10 ASP A 10 -166.75 55.50 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QGM RELATED DB: PDB REMARK 900 1QGM IS CG1-30 MOLECULE REMARK 900 RELATED ID: 1I8X RELATED DB: PDB REMARK 900 1I8X IS CG1-30 MOLECULE REMARK 900 RELATED ID: 4971 RELATED DB: BMRB REMARK 900 4871 IS NMR DATA FOR THIS MOLECULE
DBREF 1I8Y A 1 28 UNP P81013 GRN1_CYPCA 3 30
SEQADV 1I8Y SER A 15 UNP P81013 CYS 17 ENGINEERED SEQADV 1I8Y SER A 25 UNP P81013 CYS 27 ENGINEERED
SEQRES 1 A 28 HIS CYS ASP ALA ALA THR ILE CYS PRO ASP GLY THR THR SEQRES 2 A 28 CYS SER LEU SER PRO TYR GLY VAL TRP TYR CYS SER PRO SEQRES 3 A 28 PHE SER
SHEET 1 A 2 THR A 13 LEU A 16 0 SHEET 2 A 2 TRP A 22 SER A 25 -1 O TYR A 23 N SER A 15
SSBOND 1 CYS A 2 CYS A 14 1555 1555 2.03 SSBOND 2 CYS A 8 CYS A 24 1555 1555 2.03
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000