10 20 30 40 50 60 70 80 1I5J - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LIPID TRANSPORT 27-FEB-01 1I5J
TITLE NMR STRUCTURE OF HUMAN APOLIPOPROTEIN C-II IN THE PRESENCE TITLE 2 OF SDS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOLIPOPROTEIN CII; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: APOC-II; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS PROTEIN-LIPID INTERACTION, AMPHIPATHIC ALPHA HELIX, LIPID KEYWDS 2 TRANSPORT
EXPDTA SOLUTION NMR
NUMMDL 25
AUTHOR C.A.MACRAILD,D.M.HATTERS,G.J.HOWLETT,P.R.GOOLEY
REVDAT 2 24-FEB-09 1I5J 1 VERSN REVDAT 1 16-MAY-01 1I5J 0
JRNL AUTH C.A.MACRAILD,D.M.HATTERS,G.J.HOWLETT,P.R.GOOLEY JRNL TITL NMR STRUCTURE OF HUMAN APOLIPOPROTEIN C-II IN THE JRNL TITL 2 PRESENCE OF SODIUM DODECYL SULFATE. JRNL REF BIOCHEMISTRY V. 40 5414 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11331005 JRNL DOI 10.1021/BI002821M
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1I5J COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-01. REMARK 100 THE RCSB ID CODE IS RCSB012930.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 20 MM SODIUM ACETATE, 220 MM REMARK 210 SODIUM DODECY SULFATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.8 MM U-15N APOC-II; 220 MM REMARK 210 SDS; 20 MM SODIUM ACETATE, PH5 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, HNHA, REMARK 210 HMQC-NOESY-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1.7, XEASY 1.4, DYANA REMARK 210 1.5 REMARK 210 METHOD USED : TORSION ANGLE AND CARTESIAN REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH FAVOURABLE REMARK 210 NON-BOND ENERGY AND MINIMAL REMARK 210 CONSTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 5 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-25 REMARK 465 RES C SSSEQI REMARK 465 THR A 1 REMARK 465 GLN A 2 REMARK 465 GLN A 3 REMARK 465 PRO A 4 REMARK 465 GLN A 5 REMARK 465 GLN A 6 REMARK 465 ASP A 7 REMARK 465 GLU A 8 REMARK 465 MET A 9 REMARK 465 PRO A 10 REMARK 465 SER A 11 REMARK 465 PRO A 12
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 14 -60.99 -164.28 REMARK 500 1 TYR A 37 -78.02 -66.60 REMARK 500 1 GLU A 38 26.91 -163.70 REMARK 500 1 THR A 40 -21.35 -141.83 REMARK 500 1 LEU A 42 48.93 -152.51 REMARK 500 1 VAL A 45 -88.89 -146.87 REMARK 500 1 ASP A 46 98.65 66.19 REMARK 500 1 GLU A 47 -74.36 37.58 REMARK 500 1 LYS A 48 -33.90 -39.50 REMARK 500 1 ARG A 50 35.73 -96.77 REMARK 500 1 ASP A 51 -39.03 -130.07 REMARK 500 1 THR A 57 32.57 178.51 REMARK 500 1 ALA A 58 42.90 75.45 REMARK 500 2 TYR A 37 -7.78 -163.75 REMARK 500 2 LEU A 42 -61.20 -143.99 REMARK 500 2 ALA A 44 18.01 -155.23 REMARK 500 2 ARG A 50 97.00 -173.01 REMARK 500 2 ASP A 51 -44.80 -163.49 REMARK 500 2 LYS A 55 -50.34 -145.76 REMARK 500 3 PHE A 14 -15.91 67.06 REMARK 500 3 TYR A 37 -14.04 -173.75 REMARK 500 3 TYR A 41 -76.16 -57.90 REMARK 500 3 LEU A 42 56.15 -149.85 REMARK 500 3 PRO A 43 -70.45 -89.37 REMARK 500 3 ALA A 44 57.42 -173.12 REMARK 500 4 PHE A 14 -60.98 -150.54 REMARK 500 4 GLU A 38 -40.57 -141.53 REMARK 500 4 LEU A 42 -59.19 -142.74 REMARK 500 4 PRO A 43 48.94 -71.39 REMARK 500 4 ALA A 44 25.41 -177.23 REMARK 500 4 VAL A 45 -55.12 -142.62 REMARK 500 4 THR A 57 26.36 -174.80 REMARK 500 4 ALA A 58 39.91 81.27 REMARK 500 5 PHE A 14 -44.56 -143.16 REMARK 500 5 GLU A 38 -55.47 -139.77 REMARK 500 5 TYR A 41 -159.75 -67.38 REMARK 500 5 PRO A 43 19.62 -68.18 REMARK 500 5 ASP A 51 -49.27 -157.22 REMARK 500 5 ALA A 58 -46.43 -138.79 REMARK 500 6 GLU A 38 -62.39 -144.00 REMARK 500 6 PRO A 43 46.87 -76.67 REMARK 500 6 GLU A 47 46.23 -77.45 REMARK 500 6 LYS A 48 24.12 48.61 REMARK 500 6 VAL A 71 -66.42 -99.69 REMARK 500 6 LYS A 76 -67.60 -134.67 REMARK 500 6 GLU A 78 63.14 79.62 REMARK 500 7 TYR A 37 -75.06 -125.56 REMARK 500 7 THR A 40 -36.40 78.82 REMARK 500 7 TYR A 41 -49.86 -21.04 REMARK 500 7 LEU A 42 170.96 -58.27 REMARK 500 7 PRO A 43 -6.13 -54.83 REMARK 500 7 ASP A 51 -44.67 -177.59 REMARK 500 7 ALA A 58 -46.00 -135.07 REMARK 500 7 VAL A 71 -65.30 -100.26 REMARK 500 7 GLU A 78 61.04 77.14 REMARK 500 8 PHE A 14 -51.03 -152.25 REMARK 500 8 TYR A 37 -71.69 -69.96 REMARK 500 8 GLU A 38 -1.34 -148.60 REMARK 500 8 ASP A 46 104.39 73.60 REMARK 500 8 GLU A 47 -62.03 84.73 REMARK 500 8 LYS A 55 -40.74 -144.59 REMARK 500 8 VAL A 71 -64.19 -108.39 REMARK 500 8 GLU A 78 61.35 64.89 REMARK 500 9 PHE A 14 -59.56 -120.78 REMARK 500 9 GLU A 38 30.85 73.01 REMARK 500 9 THR A 40 -61.54 -101.97 REMARK 500 9 PRO A 43 -71.18 -33.06 REMARK 500 9 ALA A 44 76.97 178.18 REMARK 500 9 VAL A 45 -68.67 -103.12 REMARK 500 9 ASP A 51 -57.94 -146.32 REMARK 500 9 SER A 54 30.68 -90.36 REMARK 500 9 LYS A 55 -46.08 -151.35 REMARK 500 10 TYR A 37 7.57 -155.89 REMARK 500 10 LYS A 39 18.08 58.52 REMARK 500 10 ASP A 51 -48.77 -144.45 REMARK 500 11 PHE A 14 -46.23 -132.35 REMARK 500 11 GLU A 38 -64.91 -139.55 REMARK 500 11 PRO A 43 64.13 -64.44 REMARK 500 11 ALA A 44 27.98 47.55 REMARK 500 11 LYS A 55 -35.95 -133.92 REMARK 500 11 VAL A 71 -70.58 -98.30 REMARK 500 11 LYS A 76 -68.01 -134.75 REMARK 500 11 GLU A 78 56.95 79.72 REMARK 500 12 GLU A 38 -20.07 169.11 REMARK 500 12 LYS A 39 -5.07 77.63 REMARK 500 12 TYR A 41 -75.01 -63.15 REMARK 500 12 PRO A 43 -90.80 -75.88 REMARK 500 12 ALA A 44 33.25 -156.55 REMARK 500 12 SER A 54 32.00 -90.94 REMARK 500 12 LYS A 55 -43.14 -155.15 REMARK 500 13 GLU A 38 -58.61 -149.67 REMARK 500 13 PRO A 43 87.12 -69.29 REMARK 500 14 PHE A 14 -17.01 67.46 REMARK 500 14 TYR A 37 -76.27 -71.13 REMARK 500 14 GLU A 38 39.33 172.45 REMARK 500 14 TYR A 41 160.33 -49.20 REMARK 500 14 LEU A 42 86.00 50.73 REMARK 500 14 PRO A 43 89.89 -40.91 REMARK 500 14 ALA A 44 25.87 49.17 REMARK 500 14 ARG A 50 77.87 -166.31 REMARK 500 14 ASP A 51 -47.04 175.41 REMARK 500 14 LYS A 55 -31.33 -131.49 REMARK 500 14 MET A 60 -29.66 -148.26 REMARK 500 14 THR A 62 -34.29 -136.33 REMARK 500 15 GLU A 38 -71.82 -130.73 REMARK 500 15 PRO A 43 47.19 -73.14 REMARK 500 15 ALA A 58 -45.07 -144.96 REMARK 500 16 PHE A 14 -56.80 -156.40 REMARK 500 16 GLU A 38 -35.17 -137.64 REMARK 500 16 TYR A 41 -77.48 -64.03 REMARK 500 16 PRO A 43 48.25 -71.50 REMARK 500 16 ALA A 44 21.44 -170.07 REMARK 500 16 VAL A 45 -90.70 -149.21 REMARK 500 16 ASP A 46 90.10 52.14 REMARK 500 16 GLU A 47 -71.50 60.15 REMARK 500 16 LYS A 55 -37.19 -146.03 REMARK 500 17 PHE A 14 -48.12 -163.02 REMARK 500 17 GLU A 38 -58.07 -137.13 REMARK 500 17 ASP A 51 -54.67 -139.87 REMARK 500 17 VAL A 71 -69.54 -99.40 REMARK 500 18 PHE A 14 -38.35 -135.11 REMARK 500 18 GLU A 38 -61.19 -149.74 REMARK 500 18 LEU A 42 -59.78 -144.49 REMARK 500 18 PRO A 43 69.70 -63.20 REMARK 500 18 ALA A 44 29.21 -171.80 REMARK 500 18 GLU A 47 -51.24 -145.57 REMARK 500 18 THR A 57 -23.67 -178.91 REMARK 500 18 ALA A 58 44.74 145.40 REMARK 500 18 VAL A 71 -64.63 -104.32 REMARK 500 18 LYS A 76 -78.12 -134.18 REMARK 500 18 GLU A 78 60.73 79.46 REMARK 500 19 LYS A 39 17.71 58.66 REMARK 500 19 LEU A 42 -61.27 -155.20 REMARK 500 19 PRO A 43 43.64 -66.46 REMARK 500 19 ALA A 44 39.61 177.11 REMARK 500 19 ARG A 50 105.96 -176.44 REMARK 500 19 ASP A 51 -62.55 -175.74 REMARK 500 19 LYS A 55 -44.03 -149.95 REMARK 500 19 VAL A 71 -66.85 -100.22 REMARK 500 20 PHE A 14 -17.39 67.77 REMARK 500 20 THR A 57 -5.46 -145.89 REMARK 500 20 ALA A 58 41.78 72.46 REMARK 500 21 PHE A 14 -17.47 67.14 REMARK 500 21 GLU A 38 -18.21 -158.13 REMARK 500 21 PRO A 43 47.54 -78.73 REMARK 500 21 ARG A 50 96.36 -161.07 REMARK 500 21 ASP A 51 -50.82 -161.81 REMARK 500 21 ALA A 58 -49.33 -139.51 REMARK 500 21 VAL A 71 -71.88 -100.77 REMARK 500 21 LYS A 76 -67.58 -137.00 REMARK 500 21 GLU A 78 56.85 77.23 REMARK 500 22 LYS A 39 19.13 54.70 REMARK 500 22 PRO A 43 48.20 -76.85 REMARK 500 22 ALA A 44 16.26 -163.63 REMARK 500 22 VAL A 45 -66.03 -121.21 REMARK 500 22 ASP A 46 89.45 62.26 REMARK 500 22 ALA A 58 -49.25 -146.65 REMARK 500 22 VAL A 71 -64.08 -101.40 REMARK 500 23 PHE A 14 -55.13 -164.29 REMARK 500 23 PRO A 43 33.66 -82.48 REMARK 500 23 ASP A 51 -44.20 179.16 REMARK 500 23 LYS A 55 -53.13 -163.44 REMARK 500 23 THR A 57 -32.87 -133.51 REMARK 500 24 GLU A 38 -60.02 -148.28 REMARK 500 24 LEU A 42 -69.63 -131.00 REMARK 500 24 THR A 57 29.90 179.55 REMARK 500 24 ALA A 58 42.08 76.97 REMARK 500 24 GLU A 78 -27.99 -144.86 REMARK 500 25 PHE A 14 -74.19 -103.15 REMARK 500 25 GLU A 38 -68.88 -135.37 REMARK 500 25 TYR A 41 -76.97 -73.80 REMARK 500 25 LEU A 42 -65.30 -96.26 REMARK 500 25 PRO A 43 61.35 -68.90 REMARK 500 25 VAL A 45 -51.78 -133.93 REMARK 500 25 VAL A 71 -68.97 -100.87 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1I5J A 1 79 UNP P02655 APOC2_HUMAN 1 79
SEQRES 1 A 79 THR GLN GLN PRO GLN GLN ASP GLU MET PRO SER PRO THR SEQRES 2 A 79 PHE LEU THR GLN VAL LYS GLU SER LEU SER SER TYR TRP SEQRES 3 A 79 GLU SER ALA LYS THR ALA ALA GLN ASN LEU TYR GLU LYS SEQRES 4 A 79 THR TYR LEU PRO ALA VAL ASP GLU LYS LEU ARG ASP LEU SEQRES 5 A 79 TYR SER LYS SER THR ALA ALA MET SER THR TYR THR GLY SEQRES 6 A 79 ILE PHE THR ASP GLN VAL LEU SER VAL LEU LYS GLY GLU SEQRES 7 A 79 GLU
HELIX 1 1 PHE A 14 LEU A 36 1 23 HELIX 2 2 THR A 62 LYS A 76 1 15
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000