10 20 30 40 50 60 70 80 1I3S - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER APOPTOSIS 15-FEB-01 1I3S
TITLE THE 2.7 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF A MUTATED TITLE 2 BACULOVIRUS P35 AFTER CASPASE CLEAVAGE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: EARLY 35 KDA PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: APOPTOSIS PREVENTING PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AUTOGRAPHA CALIFORNICA SOURCE 3 NUCLEOPOLYHEDROVIRUS; SOURCE 4 ORGANISM_TAXID: 46015; SOURCE 5 GENE: P35; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B+
KEYWDS HAIRPIN LOOP, HELIX-TURN-HELIX, REACTIVE SITE LOOP, KEYWDS 2 APOPTOSIS
EXPDTA X-RAY DIFFRACTION
AUTHOR W.P.DELA CRUZ,D.LEMONGELLO,P.D.FRIESEN,A.J.FISHER
REVDAT 2 24-FEB-09 1I3S 1 VERSN REVDAT 1 24-OCT-01 1I3S 0
JRNL AUTH W.P.DELA CRUZ,P.D.FRIESEN,A.J.FISHER JRNL TITL CRYSTAL STRUCTURE OF BACULOVIRUS P35 REVEALS A JRNL TITL 2 NOVEL CONFORMATIONAL CHANGE IN THE REACTIVE SITE JRNL TITL 3 LOOP AFTER CASPASE CLEAVAGE. JRNL REF J.BIOL.CHEM. V. 276 32933 2001 JRNL REFN ISSN 0021-9258 JRNL PMID 11402050 JRNL DOI 10.1074/JBC.M103930200
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.J.FISHER,W.P.DELA CRUZ,S.J.ZOOG,C.L.SCHNEIDER, REMARK 1 AUTH 2 P.D.FRIESEN REMARK 1 TITL CRYSTAL STRUCTURE OF BACULOVIRUS P35: ROLE OF A REMARK 1 TITL 2 NOVEL REACTIVE SITE LOOP IN APOPTOTIC INHIBITION REMARK 1 REF EMBO J. V. 18 2031 1999 REMARK 1 REFN ISSN 0261-4189 REMARK 1 DOI 10.1093/EMBOJ/18.8.2031
REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1079019.620 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 25271 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1222 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3939 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 203 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6703 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -12.67000 REMARK 3 B22 (A**2) : 10.22000 REMARK 3 B33 (A**2) : 2.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.28 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.35 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.70 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.95 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : OVERALL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 35.49 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1I3S COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-01. REMARK 100 THE RCSB ID CODE IS RCSB012867.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-00 REMARK 200 TEMPERATURE (KELVIN) : 170 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : NI MIRROR + NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25271 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 7.260 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 450.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.46 REMARK 200 R MERGE FOR SHELL (I) : 0.33400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1I3P REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9-13% PEG 20,000, 100-400 MM NACL, REMARK 280 100 MM MES, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.80400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.04950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.65150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.04950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.80400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.65150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 2 REMARK 465 VAL A 3 REMARK 465 ILE A 4 REMARK 465 PHE A 5 REMARK 465 PRO A 6 REMARK 465 VAL A 7 REMARK 465 GLU A 8 REMARK 465 ILE A 9 REMARK 465 ASP A 10 REMARK 465 VAL A 11 REMARK 465 GLY A 88 REMARK 465 PHE A 89 REMARK 465 HIS A 90 REMARK 465 ASP A 91 REMARK 465 LYS A 299 REMARK 465 CYS B 2 REMARK 465 VAL B 3 REMARK 465 ILE B 4 REMARK 465 PHE B 5 REMARK 465 PRO B 6 REMARK 465 VAL B 7 REMARK 465 GLU B 8 REMARK 465 ILE B 9 REMARK 465 ASP B 10 REMARK 465 VAL B 11 REMARK 465 GLN B 85 REMARK 465 MET B 86 REMARK 465 ASP B 87 REMARK 465 GLY B 88 REMARK 465 PHE B 89 REMARK 465 HIS B 90 REMARK 465 ASP B 91 REMARK 465 CYS C 2 REMARK 465 VAL C 3 REMARK 465 ILE C 4 REMARK 465 PHE C 5 REMARK 465 PRO C 6 REMARK 465 VAL C 7 REMARK 465 GLU C 8 REMARK 465 ILE C 9 REMARK 465 ASP C 10 REMARK 465 VAL C 11 REMARK 465 MET C 86 REMARK 465 ASP C 87 REMARK 465 GLY C 88 REMARK 465 PHE C 89 REMARK 465 HIS C 90 REMARK 465 ASP C 91
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 MET A 86 CG SD CE REMARK 470 ASP A 87 CG OD1 OD2 REMARK 470 GLU A 99 CG CD OE1 OE2 REMARK 470 SER A 113 OG REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 LYS A 117 CG CD CE NZ REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 ASP A 123 CG OD1 OD2 REMARK 470 LYS A 127 CG CD CE NZ REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 GLU A 131 CG CD OE1 OE2 REMARK 470 GLU A 144 CG CD OE1 OE2 REMARK 470 ARG A 145 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 ASP A 188 CG OD1 OD2 REMARK 470 LYS A 237 CG CD CE NZ REMARK 470 ASN A 238 CG OD1 ND2 REMARK 470 GLU A 251 CG CD OE1 OE2 REMARK 470 SER A 252 OG REMARK 470 SER A 253 OG REMARK 470 LYS A 256 CG CD CE NZ REMARK 470 SER A 257 OG REMARK 470 GLU A 258 CG CD OE1 OE2 REMARK 470 LYS A 274 CG CD CE NZ REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 LYS B 33 CG CD CE NZ REMARK 470 ASN B 36 CG OD1 ND2 REMARK 470 THR B 37 OG1 CG2 REMARK 470 MET B 38 CG SD CE REMARK 470 ASP B 84 CG OD1 OD2 REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 LYS B 117 CG CD CE NZ REMARK 470 THR B 125 OG1 CG2 REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 LYS B 128 CG CD CE NZ REMARK 470 GLU B 144 CG CD OE1 OE2 REMARK 470 ARG B 145 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 146 CG OD1 ND2 REMARK 470 SER B 236 OG REMARK 470 LYS B 237 CG CD CE NZ REMARK 470 GLU B 251 CG CD OE1 OE2 REMARK 470 SER B 252 OG REMARK 470 SER B 253 OG REMARK 470 TRP B 254 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 254 CZ3 CH2 REMARK 470 LYS B 256 CG CD CE NZ REMARK 470 SER B 257 OG REMARK 470 GLU B 258 CG CD OE1 OE2 REMARK 470 LYS B 274 CG CD CE NZ REMARK 470 LYS B 299 CG CD CE NZ REMARK 470 LYS C 23 CG CD CE NZ REMARK 470 LYS C 33 CG CD CE NZ REMARK 470 ASN C 36 CG OD1 ND2 REMARK 470 ASP C 98 CG OD1 OD2 REMARK 470 GLU C 99 CG CD OE1 OE2 REMARK 470 LYS C 112 CG CD CE NZ REMARK 470 LYS C 120 CG CD CE NZ REMARK 470 ASP C 123 CG OD1 OD2 REMARK 470 LYS C 127 CG CD CE NZ REMARK 470 LYS C 128 CG CD CE NZ REMARK 470 GLU C 131 CG CD OE1 OE2 REMARK 470 ASP C 143 CG OD1 OD2 REMARK 470 GLU C 144 CG CD OE1 OE2 REMARK 470 ARG C 145 CG CD NE CZ NH1 NH2 REMARK 470 SER C 236 OG REMARK 470 LYS C 237 CG CD CE NZ REMARK 470 GLU C 258 CG CD OE1 OE2 REMARK 470 LYS C 274 CG CD CE NZ REMARK 470 LYS C 299 CG CD CE NZ
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 137 CA - CB - SG ANGL. DEV. = 7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 22 173.23 179.29 REMARK 500 MET A 35 -27.87 -23.83 REMARK 500 ASN A 36 53.27 -116.72 REMARK 500 TYR A 82 36.47 -83.54 REMARK 500 ASP A 84 14.03 57.39 REMARK 500 MET A 86 70.54 -104.54 REMARK 500 LYS A 114 34.82 -145.15 REMARK 500 ASP A 123 40.47 72.31 REMARK 500 ASP A 126 106.91 -37.11 REMARK 500 ARG A 145 -61.67 -29.26 REMARK 500 ASP A 147 59.65 -93.84 REMARK 500 TYR A 148 150.30 -46.88 REMARK 500 PRO A 181 70.61 -65.38 REMARK 500 ASP A 195 83.20 -163.61 REMARK 500 ASN A 225 -18.67 -44.66 REMARK 500 SER A 236 -166.56 -109.52 REMARK 500 SER A 257 82.02 -29.03 REMARK 500 ASP B 22 -175.02 -172.34 REMARK 500 MET B 35 -31.89 -27.74 REMARK 500 TYR B 82 42.17 -100.85 REMARK 500 SER B 83 63.83 -69.27 REMARK 500 ARG B 145 -58.08 -27.91 REMARK 500 GLN B 165 54.06 -90.98 REMARK 500 PRO B 181 76.62 -66.95 REMARK 500 ASP B 195 79.58 -158.95 REMARK 500 SER B 236 -152.67 -94.56 REMARK 500 SER B 253 -87.68 -40.15 REMARK 500 TRP B 254 -15.42 -49.23 REMARK 500 LYS B 256 -35.90 70.81 REMARK 500 SER B 257 104.70 76.00 REMARK 500 ASP C 22 176.28 179.32 REMARK 500 MET C 35 -23.13 -39.11 REMARK 500 ASN C 36 44.56 -105.04 REMARK 500 LEU C 39 128.33 -23.94 REMARK 500 ASP C 84 -3.25 -58.82 REMARK 500 LYS C 114 35.43 -141.89 REMARK 500 CYS C 137 -66.92 -103.93 REMARK 500 LEU C 138 -38.42 -35.67 REMARK 500 ASP C 147 59.54 -90.96 REMARK 500 TYR C 148 155.56 -47.76 REMARK 500 ASN C 164 54.95 -116.09 REMARK 500 GLN C 165 51.01 -101.29 REMARK 500 PRO C 181 77.18 -60.95 REMARK 500 ASP C 195 80.19 -160.02 REMARK 500 SER C 236 -159.71 -89.08 REMARK 500 TRP C 254 -31.30 -138.92 REMARK 500 LYS C 256 61.68 11.49 REMARK 500 SER C 257 84.70 83.27 REMARK 500 ILE C 298 -158.81 -128.09 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTT A 1137 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTT B 2137 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTT C 3137
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P35 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BACULOVIRUS P35 REMARK 900 RELATED ID: 1I3P RELATED DB: PDB REMARK 900 3.1 ANGSTROM RESOLUTION STRUCTURE OF A MUTATED BACULOVIRUS REMARK 900 P35 AFTER CASPASE CLEAVAGE
DBREF 1I3S A 2 299 UNP P08160 VP35_NPVAC 2 299 DBREF 1I3S B 2 299 UNP P08160 VP35_NPVAC 2 299 DBREF 1I3S C 2 299 UNP P08160 VP35_NPVAC 2 299
SEQADV 1I3S MET A 38 UNP P08160 GLN 38 CONFLICT SEQADV 1I3S PRO A 71 UNP P08160 VAL 71 ENGINEERED SEQADV 1I3S MET B 38 UNP P08160 GLN 38 CONFLICT SEQADV 1I3S PRO B 71 UNP P08160 VAL 71 ENGINEERED SEQADV 1I3S MET C 38 UNP P08160 GLN 38 CONFLICT SEQADV 1I3S PRO C 71 UNP P08160 VAL 71 ENGINEERED
SEQRES 1 A 298 CYS VAL ILE PHE PRO VAL GLU ILE ASP VAL SER GLN THR SEQRES 2 A 298 ILE ILE ARG ASP CYS GLN VAL ASP LYS GLN THR ARG GLU SEQRES 3 A 298 LEU VAL TYR ILE ASN LYS ILE MET ASN THR MET LEU THR SEQRES 4 A 298 LYS PRO VAL LEU MET MET PHE ASN ILE SER GLY PRO ILE SEQRES 5 A 298 ARG SER VAL THR ARG LYS ASN ASN ASN LEU ARG ASP ARG SEQRES 6 A 298 ILE LYS SER LYS PRO ASP GLU GLN PHE ASP GLN LEU GLU SEQRES 7 A 298 ARG ASP TYR SER ASP GLN MET ASP GLY PHE HIS ASP SER SEQRES 8 A 298 ILE LYS TYR PHE LYS ASP GLU HIS TYR SER VAL SER CYS SEQRES 9 A 298 GLN ASN GLY SER VAL LEU LYS SER LYS PHE ALA LYS ILE SEQRES 10 A 298 LEU LYS SER HIS ASP TYR THR ASP LYS LYS SER ILE GLU SEQRES 11 A 298 ALA TYR GLU LYS TYR CYS LEU PRO LYS LEU VAL ASP GLU SEQRES 12 A 298 ARG ASN ASP TYR TYR VAL ALA VAL CYS VAL LEU LYS PRO SEQRES 13 A 298 GLY PHE GLU ASN GLY SER ASN GLN VAL LEU SER PHE GLU SEQRES 14 A 298 TYR ASN PRO ILE GLY ASN LYS VAL ILE VAL PRO PHE ALA SEQRES 15 A 298 HIS GLU ILE ASN ASP THR GLY LEU TYR GLU TYR ASP VAL SEQRES 16 A 298 VAL ALA TYR VAL ASP SER VAL GLN PHE ASP GLY GLU GLN SEQRES 17 A 298 PHE GLU GLU PHE VAL GLN SER LEU ILE LEU PRO SER SER SEQRES 18 A 298 PHE LYS ASN SER GLU LYS VAL LEU TYR TYR ASN GLU ALA SEQRES 19 A 298 SER LYS ASN LYS SER MET ILE TYR LYS ALA LEU GLU PHE SEQRES 20 A 298 THR THR GLU SER SER TRP GLY LYS SER GLU LYS TYR ASN SEQRES 21 A 298 TRP LYS ILE PHE CYS ASN GLY PHE ILE TYR ASP LYS LYS SEQRES 22 A 298 SER LYS VAL LEU TYR VAL LYS LEU HIS ASN VAL THR SER SEQRES 23 A 298 ALA LEU ASN LYS ASN VAL ILE LEU ASN THR ILE LYS SEQRES 1 B 298 CYS VAL ILE PHE PRO VAL GLU ILE ASP VAL SER GLN THR SEQRES 2 B 298 ILE ILE ARG ASP CYS GLN VAL ASP LYS GLN THR ARG GLU SEQRES 3 B 298 LEU VAL TYR ILE ASN LYS ILE MET ASN THR MET LEU THR SEQRES 4 B 298 LYS PRO VAL LEU MET MET PHE ASN ILE SER GLY PRO ILE SEQRES 5 B 298 ARG SER VAL THR ARG LYS ASN ASN ASN LEU ARG ASP ARG SEQRES 6 B 298 ILE LYS SER LYS PRO ASP GLU GLN PHE ASP GLN LEU GLU SEQRES 7 B 298 ARG ASP TYR SER ASP GLN MET ASP GLY PHE HIS ASP SER SEQRES 8 B 298 ILE LYS TYR PHE LYS ASP GLU HIS TYR SER VAL SER CYS SEQRES 9 B 298 GLN ASN GLY SER VAL LEU LYS SER LYS PHE ALA LYS ILE SEQRES 10 B 298 LEU LYS SER HIS ASP TYR THR ASP LYS LYS SER ILE GLU SEQRES 11 B 298 ALA TYR GLU LYS TYR CYS LEU PRO LYS LEU VAL ASP GLU SEQRES 12 B 298 ARG ASN ASP TYR TYR VAL ALA VAL CYS VAL LEU LYS PRO SEQRES 13 B 298 GLY PHE GLU ASN GLY SER ASN GLN VAL LEU SER PHE GLU SEQRES 14 B 298 TYR ASN PRO ILE GLY ASN LYS VAL ILE VAL PRO PHE ALA SEQRES 15 B 298 HIS GLU ILE ASN ASP THR GLY LEU TYR GLU TYR ASP VAL SEQRES 16 B 298 VAL ALA TYR VAL ASP SER VAL GLN PHE ASP GLY GLU GLN SEQRES 17 B 298 PHE GLU GLU PHE VAL GLN SER LEU ILE LEU PRO SER SER SEQRES 18 B 298 PHE LYS ASN SER GLU LYS VAL LEU TYR TYR ASN GLU ALA SEQRES 19 B 298 SER LYS ASN LYS SER MET ILE TYR LYS ALA LEU GLU PHE SEQRES 20 B 298 THR THR GLU SER SER TRP GLY LYS SER GLU LYS TYR ASN SEQRES 21 B 298 TRP LYS ILE PHE CYS ASN GLY PHE ILE TYR ASP LYS LYS SEQRES 22 B 298 SER LYS VAL LEU TYR VAL LYS LEU HIS ASN VAL THR SER SEQRES 23 B 298 ALA LEU ASN LYS ASN VAL ILE LEU ASN THR ILE LYS SEQRES 1 C 298 CYS VAL ILE PHE PRO VAL GLU ILE ASP VAL SER GLN THR SEQRES 2 C 298 ILE ILE ARG ASP CYS GLN VAL ASP LYS GLN THR ARG GLU SEQRES 3 C 298 LEU VAL TYR ILE ASN LYS ILE MET ASN THR MET LEU THR SEQRES 4 C 298 LYS PRO VAL LEU MET MET PHE ASN ILE SER GLY PRO ILE SEQRES 5 C 298 ARG SER VAL THR ARG LYS ASN ASN ASN LEU ARG ASP ARG SEQRES 6 C 298 ILE LYS SER LYS PRO ASP GLU GLN PHE ASP GLN LEU GLU SEQRES 7 C 298 ARG ASP TYR SER ASP GLN MET ASP GLY PHE HIS ASP SER SEQRES 8 C 298 ILE LYS TYR PHE LYS ASP GLU HIS TYR SER VAL SER CYS SEQRES 9 C 298 GLN ASN GLY SER VAL LEU LYS SER LYS PHE ALA LYS ILE SEQRES 10 C 298 LEU LYS SER HIS ASP TYR THR ASP LYS LYS SER ILE GLU SEQRES 11 C 298 ALA TYR GLU LYS TYR CYS LEU PRO LYS LEU VAL ASP GLU SEQRES 12 C 298 ARG ASN ASP TYR TYR VAL ALA VAL CYS VAL LEU LYS PRO SEQRES 13 C 298 GLY PHE GLU ASN GLY SER ASN GLN VAL LEU SER PHE GLU SEQRES 14 C 298 TYR ASN PRO ILE GLY ASN LYS VAL ILE VAL PRO PHE ALA SEQRES 15 C 298 HIS GLU ILE ASN ASP THR GLY LEU TYR GLU TYR ASP VAL SEQRES 16 C 298 VAL ALA TYR VAL ASP SER VAL GLN PHE ASP GLY GLU GLN SEQRES 17 C 298 PHE GLU GLU PHE VAL GLN SER LEU ILE LEU PRO SER SER SEQRES 18 C 298 PHE LYS ASN SER GLU LYS VAL LEU TYR TYR ASN GLU ALA SEQRES 19 C 298 SER LYS ASN LYS SER MET ILE TYR LYS ALA LEU GLU PHE SEQRES 20 C 298 THR THR GLU SER SER TRP GLY LYS SER GLU LYS TYR ASN SEQRES 21 C 298 TRP LYS ILE PHE CYS ASN GLY PHE ILE TYR ASP LYS LYS SEQRES 22 C 298 SER LYS VAL LEU TYR VAL LYS LEU HIS ASN VAL THR SER SEQRES 23 C 298 ALA LEU ASN LYS ASN VAL ILE LEU ASN THR ILE LYS
HET DTT A1137 8 HET DTT B2137 8 HET DTT C3137 8
HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE
HETSYN DTT 1,4-DITHIOTHREITOL
FORMUL 4 DTT 3(C4 H10 O2 S2) FORMUL 7 HOH *54(H2 O)
HELIX 1 1 LYS A 33 THR A 37 5 5 HELIX 2 2 ASN A 61 GLN A 77 1 17 HELIX 3 3 GLY A 108 LYS A 114 1 7 HELIX 4 4 LYS A 114 HIS A 122 1 9 HELIX 5 5 ASP A 126 CYS A 137 1 12 HELIX 6 6 CYS A 137 VAL A 142 1 6 HELIX 7 7 ASP A 206 LEU A 217 1 12 HELIX 8 8 ASN B 32 THR B 37 1 6 HELIX 9 9 ASN B 61 GLN B 77 1 17 HELIX 10 10 GLY B 108 LYS B 114 1 7 HELIX 11 11 LYS B 114 HIS B 122 1 9 HELIX 12 12 ASP B 126 CYS B 137 1 12 HELIX 13 13 CYS B 137 VAL B 142 1 6 HELIX 14 14 ASP B 206 SER B 216 1 11 HELIX 15 15 LYS C 33 THR C 37 5 5 HELIX 16 16 ASN C 61 GLN C 77 1 17 HELIX 17 17 GLY C 108 LYS C 114 1 7 HELIX 18 18 LYS C 114 SER C 121 1 8 HELIX 19 19 ASP C 126 CYS C 137 1 12 HELIX 20 20 CYS C 137 VAL C 142 1 6 HELIX 21 21 ASP C 206 SER C 216 1 11
SHEET 1 A 9 ILE A 53 ARG A 58 0 SHEET 2 A 9 LEU A 167 TYR A 171 -1 N SER A 168 O THR A 57 SHEET 3 A 9 THR A 25 ILE A 31 -1 N ARG A 26 O TYR A 171 SHEET 4 A 9 THR A 14 ASP A 22 -1 O ILE A 15 N ILE A 31 SHEET 5 A 9 TYR A 192 ASP A 201 1 O ASP A 195 N THR A 14 SHEET 6 A 9 VAL A 277 SER A 287 -1 N LEU A 278 O VAL A 200 SHEET 7 A 9 TYR A 260 ASP A 272 -1 O GLY A 268 N LYS A 281 SHEET 8 A 9 LYS A 239 THR A 250 -1 O SER A 240 N TYR A 271 SHEET 9 A 9 LYS A 228 ALA A 235 -1 O LYS A 228 N GLU A 247 SHEET 1 B 4 VAL A 43 ILE A 49 0 SHEET 2 B 4 TYR A 149 LEU A 155 -1 O TYR A 149 N ILE A 49 SHEET 3 B 4 TYR A 101 ASN A 107 -1 O SER A 102 N VAL A 154 SHEET 4 B 4 LYS A 94 LYS A 97 -1 N LYS A 94 O CYS A 105 SHEET 1 C 2 LYS A 177 VAL A 180 0 SHEET 2 C 2 VAL A 293 ASN A 296 -1 O VAL A 293 N VAL A 180 SHEET 1 D 9 ILE B 53 ARG B 58 0 SHEET 2 D 9 LEU B 167 TYR B 171 -1 N SER B 168 O THR B 57 SHEET 3 D 9 ARG B 26 ILE B 31 -1 N ARG B 26 O TYR B 171 SHEET 4 D 9 THR B 14 GLN B 20 -1 N ILE B 15 O ILE B 31 SHEET 5 D 9 TYR B 192 ASP B 201 1 O ASP B 195 N THR B 14 SHEET 6 D 9 VAL B 277 SER B 287 -1 N LEU B 278 O VAL B 200 SHEET 7 D 9 TYR B 260 ASP B 272 -1 O GLY B 268 N LYS B 281 SHEET 8 D 9 LYS B 239 THR B 250 -1 O SER B 240 N TYR B 271 SHEET 9 D 9 LYS B 228 ALA B 235 -1 O LYS B 228 N GLU B 247 SHEET 1 E 4 VAL B 43 ILE B 49 0 SHEET 2 E 4 TYR B 149 LEU B 155 -1 O TYR B 149 N ILE B 49 SHEET 3 E 4 TYR B 101 ASN B 107 -1 O SER B 102 N VAL B 154 SHEET 4 E 4 LYS B 94 LYS B 97 -1 O LYS B 94 N CYS B 105 SHEET 1 F 2 LYS B 177 VAL B 180 0 SHEET 2 F 2 VAL B 293 ASN B 296 -1 O VAL B 293 N VAL B 180 SHEET 1 G 9 ILE C 53 ARG C 58 0 SHEET 2 G 9 LEU C 167 TYR C 171 -1 N SER C 168 O THR C 57 SHEET 3 G 9 ARG C 26 ILE C 31 -1 N ARG C 26 O TYR C 171 SHEET 4 G 9 THR C 14 GLN C 20 -1 O ILE C 15 N ILE C 31 SHEET 5 G 9 TYR C 192 ASP C 201 1 O ASP C 195 N THR C 14 SHEET 6 G 9 VAL C 277 SER C 287 -1 N LEU C 278 O VAL C 200 SHEET 7 G 9 LYS C 259 ASP C 272 -1 O GLY C 268 N LYS C 281 SHEET 8 G 9 LYS C 239 GLU C 251 -1 O SER C 240 N TYR C 271 SHEET 9 G 9 LYS C 228 ALA C 235 -1 O LYS C 228 N GLU C 247 SHEET 1 H 4 VAL C 43 ILE C 49 0 SHEET 2 H 4 TYR C 149 LEU C 155 -1 O TYR C 149 N ILE C 49 SHEET 3 H 4 TYR C 101 ASN C 107 -1 O SER C 102 N VAL C 154 SHEET 4 H 4 LYS C 94 LYS C 97 -1 O LYS C 94 N CYS C 105 SHEET 1 I 2 LYS C 177 VAL C 180 0 SHEET 2 I 2 VAL C 293 ASN C 296 -1 O VAL C 293 N VAL C 180
LINK S1 DTT A1137 SG CYS A 137 1555 1555 2.07 LINK S1 DTT B2137 SG CYS B 137 1555 1555 2.05 LINK S1 DTT C3137 SG CYS C 137 1555 1555 2.07
SITE 1 AC1 4 MET A 46 TYR A 133 CYS A 137 ALA A 183 SITE 1 AC2 5 MET B 46 TYR B 133 CYS B 137 ALA B 183 SITE 2 AC2 5 GLU B 185 SITE 1 AC3 4 MET C 46 TYR C 133 CYS C 137 ALA C 183
CRYST1 77.608 89.303 136.099 90.00 90.00 90.00 P 21 21 21 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012885 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011198 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007348 0.00000