10 20 30 40 50 60 70 80 1HZJ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ISOMERASE 25-JAN-01 1HZJ
TITLE HUMAN UDP-GALACTOSE 4-EPIMERASE: ACCOMMODATION OF UDP-N- TITLE 2 ACETYLGLUCOSAMINE WITHIN THE ACTIVE SITE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GALACTOSE 4-EPIMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UDP-GLUCOSE 4-EPIMERASE; COMPND 5 EC: 5.1.3.2; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: GS115; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPIC3.5KHGALE
KEYWDS EPIMERASE, SHORT-CHAIN DEHYDROGENASE, GALACTOSEMIA, KEYWDS 2 ISOMERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR J.B.THODEN,T.M.WOHLERS,J.L.FRIDOVICH-KEIL,H.M.HOLDEN
REVDAT 3 24-FEB-09 1HZJ 1 VERSN REVDAT 2 01-APR-03 1HZJ 1 JRNL REVDAT 1 09-MAY-01 1HZJ 0
JRNL AUTH J.B.THODEN,T.M.WOHLERS,J.L.FRIDOVICH-KEIL, JRNL AUTH 2 H.M.HOLDEN JRNL TITL HUMAN UDP-GALACTOSE 4-EPIMERASE. ACCOMMODATION OF JRNL TITL 2 UDP-N-ACETYLGLUCOSAMINE WITHIN THE ACTIVE SITE. JRNL REF J.BIOL.CHEM. V. 276 15131 2001 JRNL REFN ISSN 0021-9258 JRNL PMID 11279032 JRNL DOI 10.1074/JBC.M100220200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 104972 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 7860 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1850 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 104972 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5379 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 174 REMARK 3 SOLVENT ATOMS : 931 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.011 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.100 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : 15.600; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : ENGH & HUBER REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1HZJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-01. REMARK 100 THE RCSB ID CODE IS RCSB012718.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-2 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 104972 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.28600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: TNT REMARK 200 STARTING MODEL: PDB ENTRY 1EK6 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG-3400, SODIUM CHLORIDE, REMARK 280 MAGNESIUM CHLORIDE, MES, NADH, UDP-N-ACETYLGLUCOSAMINE, PH REMARK 280 6.0, BATCH, TEMPERATURE 276K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.70000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.35000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.45000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.35000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.70000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.45000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HOMODIMER COMPRISED OF REMARK 300 CHAINS A AND B IN THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 347 REMARK 465 ALA A 348 REMARK 465 MET B 1 REMARK 465 GLN B 347 REMARK 465 ALA B 348
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 180 CG1 CG2 REMARK 470 THR A 346 OG1 CG2 REMARK 470 VAL B 180 CG1 CG2 REMARK 470 THR B 346 OG1 CG2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 1657 O HOH B 1829 2.05 REMARK 500 O HOH A 1816 O HOH A 1817 2.10 REMARK 500 O GLU B 316 O HOH B 1743 2.11 REMARK 500 O HOH A 1361 O HOH A 1398 2.17 REMARK 500 O THR B 271 O HOH B 1965 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 21 CD GLU A 21 OE2 0.070 REMARK 500 GLU A 61 CD GLU A 61 OE2 0.077 REMARK 500 GLU A 96 CD GLU A 96 OE2 0.100 REMARK 500 GLU A 233 CD GLU A 233 OE2 0.066 REMARK 500 GLU A 285 CD GLU A 285 OE2 0.087 REMARK 500 GLU B 63 CD GLU B 63 OE2 0.069 REMARK 500 GLU B 64 CD GLU B 64 OE2 0.066 REMARK 500 GLU B 96 CD GLU B 96 OE2 0.080 REMARK 500 GLU B 146 CD GLU B 146 OE2 0.068 REMARK 500 GLU B 199 CD GLU B 199 OE2 0.076 REMARK 500 GLU B 221 CD GLU B 221 OE2 0.066 REMARK 500 GLU B 331 CD GLU B 331 OE2 0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 51 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ASP A 69 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 GLN A 70 N - CA - CB ANGL. DEV. = -11.3 DEGREES REMARK 500 ASP A 103 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 103 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A 234 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 234 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 246 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 300 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP A 303 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 327 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 327 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ASP A 332 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 335 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 58 CD - NE - CZ ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG B 58 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP B 66 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP B 66 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ASP B 69 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP B 69 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ARG B 75 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 106 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP B 145 CB - CG - OD1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ASP B 145 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP B 170 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 170 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP B 200 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP B 229 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP B 229 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP B 231 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG B 239 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 256 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 299 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP B 303 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 303 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 GLU B 316 CA - C - O ANGL. DEV. = 15.9 DEGREES REMARK 500 GLU B 316 O - C - N ANGL. DEV. = -18.4 DEGREES REMARK 500 ARG B 335 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 40 -91.03 -79.60 REMARK 500 VAL A 124 68.77 -108.50 REMARK 500 SER A 131 -164.11 -102.88 REMARK 500 PHE A 186 -113.89 -90.90 REMARK 500 ASP A 200 66.95 -113.19 REMARK 500 PHE B 186 -153.51 -93.23 REMARK 500 ASP B 200 74.93 -118.80 REMARK 500 ASP B 231 40.21 -67.72 REMARK 500 VAL B 297 -166.64 -129.31 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1513 DISTANCE = 5.10 ANGSTROMS REMARK 525 HOH B1914 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH B1931 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH A1654 DISTANCE = 7.64 ANGSTROMS REMARK 525 HOH A1745 DISTANCE = 5.47 ANGSTROMS REMARK 525 HOH A1814 DISTANCE = 5.01 ANGSTROMS REMARK 525 HOH A1959 DISTANCE = 6.03 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 960 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1292 O REMARK 620 2 HOH A1313 O 81.0 REMARK 620 3 HOH A1941 O 78.4 81.8 REMARK 620 4 HOH A1409 O 107.2 160.4 82.6 REMARK 620 5 HOH A1749 O 164.0 85.4 108.0 88.3 REMARK 620 6 HOH A1287 O 88.3 98.1 166.6 99.8 85.3 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 950 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 951 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 952 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 960 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 400 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UD1 A 401 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 900 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UD1 B 901
DBREF 1HZJ A 1 348 UNP Q14376 GALE_HUMAN 1 348 DBREF 1HZJ B 1 348 UNP Q14376 GALE_HUMAN 1 348
SEQRES 1 A 348 MET ALA GLU LYS VAL LEU VAL THR GLY GLY ALA GLY TYR SEQRES 2 A 348 ILE GLY SER HIS THR VAL LEU GLU LEU LEU GLU ALA GLY SEQRES 3 A 348 TYR LEU PRO VAL VAL ILE ASP ASN PHE HIS ASN ALA PHE SEQRES 4 A 348 ARG GLY GLY GLY SER LEU PRO GLU SER LEU ARG ARG VAL SEQRES 5 A 348 GLN GLU LEU THR GLY ARG SER VAL GLU PHE GLU GLU MET SEQRES 6 A 348 ASP ILE LEU ASP GLN GLY ALA LEU GLN ARG LEU PHE LYS SEQRES 7 A 348 LYS TYR SER PHE MET ALA VAL ILE HIS PHE ALA GLY LEU SEQRES 8 A 348 LYS ALA VAL GLY GLU SER VAL GLN LYS PRO LEU ASP TYR SEQRES 9 A 348 TYR ARG VAL ASN LEU THR GLY THR ILE GLN LEU LEU GLU SEQRES 10 A 348 ILE MET LYS ALA HIS GLY VAL LYS ASN LEU VAL PHE SER SEQRES 11 A 348 SER SER ALA THR VAL TYR GLY ASN PRO GLN TYR LEU PRO SEQRES 12 A 348 LEU ASP GLU ALA HIS PRO THR GLY GLY CYS THR ASN PRO SEQRES 13 A 348 TYR GLY LYS SER LYS PHE PHE ILE GLU GLU MET ILE ARG SEQRES 14 A 348 ASP LEU CYS GLN ALA ASP LYS THR TRP ASN VAL VAL LEU SEQRES 15 A 348 LEU ARG TYR PHE ASN PRO THR GLY ALA HIS ALA SER GLY SEQRES 16 A 348 CYS ILE GLY GLU ASP PRO GLN GLY ILE PRO ASN ASN LEU SEQRES 17 A 348 MET PRO TYR VAL SER GLN VAL ALA ILE GLY ARG ARG GLU SEQRES 18 A 348 ALA LEU ASN VAL PHE GLY ASN ASP TYR ASP THR GLU ASP SEQRES 19 A 348 GLY THR GLY VAL ARG ASP TYR ILE HIS VAL VAL ASP LEU SEQRES 20 A 348 ALA LYS GLY HIS ILE ALA ALA LEU ARG LYS LEU LYS GLU SEQRES 21 A 348 GLN CYS GLY CYS ARG ILE TYR ASN LEU GLY THR GLY THR SEQRES 22 A 348 GLY TYR SER VAL LEU GLN MET VAL GLN ALA MET GLU LYS SEQRES 23 A 348 ALA SER GLY LYS LYS ILE PRO TYR LYS VAL VAL ALA ARG SEQRES 24 A 348 ARG GLU GLY ASP VAL ALA ALA CYS TYR ALA ASN PRO SER SEQRES 25 A 348 LEU ALA GLN GLU GLU LEU GLY TRP THR ALA ALA LEU GLY SEQRES 26 A 348 LEU ASP ARG MET CYS GLU ASP LEU TRP ARG TRP GLN LYS SEQRES 27 A 348 GLN ASN PRO SER GLY PHE GLY THR GLN ALA SEQRES 1 B 348 MET ALA GLU LYS VAL LEU VAL THR GLY GLY ALA GLY TYR SEQRES 2 B 348 ILE GLY SER HIS THR VAL LEU GLU LEU LEU GLU ALA GLY SEQRES 3 B 348 TYR LEU PRO VAL VAL ILE ASP ASN PHE HIS ASN ALA PHE SEQRES 4 B 348 ARG GLY GLY GLY SER LEU PRO GLU SER LEU ARG ARG VAL SEQRES 5 B 348 GLN GLU LEU THR GLY ARG SER VAL GLU PHE GLU GLU MET SEQRES 6 B 348 ASP ILE LEU ASP GLN GLY ALA LEU GLN ARG LEU PHE LYS SEQRES 7 B 348 LYS TYR SER PHE MET ALA VAL ILE HIS PHE ALA GLY LEU SEQRES 8 B 348 LYS ALA VAL GLY GLU SER VAL GLN LYS PRO LEU ASP TYR SEQRES 9 B 348 TYR ARG VAL ASN LEU THR GLY THR ILE GLN LEU LEU GLU SEQRES 10 B 348 ILE MET LYS ALA HIS GLY VAL LYS ASN LEU VAL PHE SER SEQRES 11 B 348 SER SER ALA THR VAL TYR GLY ASN PRO GLN TYR LEU PRO SEQRES 12 B 348 LEU ASP GLU ALA HIS PRO THR GLY GLY CYS THR ASN PRO SEQRES 13 B 348 TYR GLY LYS SER LYS PHE PHE ILE GLU GLU MET ILE ARG SEQRES 14 B 348 ASP LEU CYS GLN ALA ASP LYS THR TRP ASN VAL VAL LEU SEQRES 15 B 348 LEU ARG TYR PHE ASN PRO THR GLY ALA HIS ALA SER GLY SEQRES 16 B 348 CYS ILE GLY GLU ASP PRO GLN GLY ILE PRO ASN ASN LEU SEQRES 17 B 348 MET PRO TYR VAL SER GLN VAL ALA ILE GLY ARG ARG GLU SEQRES 18 B 348 ALA LEU ASN VAL PHE GLY ASN ASP TYR ASP THR GLU ASP SEQRES 19 B 348 GLY THR GLY VAL ARG ASP TYR ILE HIS VAL VAL ASP LEU SEQRES 20 B 348 ALA LYS GLY HIS ILE ALA ALA LEU ARG LYS LEU LYS GLU SEQRES 21 B 348 GLN CYS GLY CYS ARG ILE TYR ASN LEU GLY THR GLY THR SEQRES 22 B 348 GLY TYR SER VAL LEU GLN MET VAL GLN ALA MET GLU LYS SEQRES 23 B 348 ALA SER GLY LYS LYS ILE PRO TYR LYS VAL VAL ALA ARG SEQRES 24 B 348 ARG GLU GLY ASP VAL ALA ALA CYS TYR ALA ASN PRO SER SEQRES 25 B 348 LEU ALA GLN GLU GLU LEU GLY TRP THR ALA ALA LEU GLY SEQRES 26 B 348 LEU ASP ARG MET CYS GLU ASP LEU TRP ARG TRP GLN LYS SEQRES 27 B 348 GLN ASN PRO SER GLY PHE GLY THR GLN ALA
HET CL A 950 1 HET CL B 951 1 HET CL A 952 1 HET MG A 960 1 HET NAD A 400 44 HET UD1 A 401 43 HET NAD B 900 44 HET UD1 B 901 39
HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM UD1 URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE
FORMUL 3 CL 3(CL 1-) FORMUL 6 MG MG 2+ FORMUL 7 NAD 2(C21 H27 N7 O14 P2) FORMUL 8 UD1 2(C17 H27 N3 O17 P2) FORMUL 11 HOH *931(H2 O)
HELIX 1 1 GLY A 12 ALA A 25 1 14 HELIX 2 2 PRO A 46 GLY A 57 1 12 HELIX 3 3 ASP A 69 TYR A 80 1 12 HELIX 4 4 ALA A 93 LYS A 100 1 8 HELIX 5 5 LYS A 100 GLY A 123 1 24 HELIX 6 6 THR A 134 GLY A 137 5 4 HELIX 7 7 ASN A 155 ASP A 175 1 21 HELIX 8 8 ASN A 207 ILE A 217 1 11 HELIX 9 9 VAL A 244 GLU A 260 1 17 HELIX 10 10 VAL A 277 GLY A 289 1 13 HELIX 11 11 PRO A 311 GLY A 319 1 9 HELIX 12 12 GLY A 325 ASN A 340 1 16 HELIX 13 13 GLY B 12 ALA B 25 1 14 HELIX 14 14 PRO B 46 GLY B 57 1 12 HELIX 15 15 ASP B 69 TYR B 80 1 12 HELIX 16 16 ALA B 93 LYS B 100 1 8 HELIX 17 17 LYS B 100 HIS B 122 1 23 HELIX 18 18 THR B 134 GLY B 137 5 4 HELIX 19 19 ASN B 155 ASP B 175 1 21 HELIX 20 20 ASN B 207 ILE B 217 1 11 HELIX 21 21 VAL B 244 LYS B 259 1 16 HELIX 22 22 VAL B 277 GLY B 289 1 13 HELIX 23 23 PRO B 311 GLY B 319 1 9 HELIX 24 24 GLY B 325 ASN B 340 1 16
SHEET 1 A 7 GLU A 61 GLU A 64 0 SHEET 2 A 7 PRO A 29 ASP A 33 1 O PRO A 29 N GLU A 61 SHEET 3 A 7 LYS A 4 THR A 8 1 O VAL A 5 N VAL A 30 SHEET 4 A 7 PHE A 82 HIS A 87 1 N MET A 83 O LYS A 4 SHEET 5 A 7 ASN A 126 SER A 132 1 O ASN A 126 N VAL A 85 SHEET 6 A 7 ASN A 179 TYR A 185 1 O ASN A 179 N LEU A 127 SHEET 7 A 7 CYS A 264 LEU A 269 1 O ARG A 265 N LEU A 182 SHEET 1 B 2 ASN A 187 THR A 189 0 SHEET 2 B 2 TYR A 241 HIS A 243 1 N ILE A 242 O ASN A 187 SHEET 1 C 2 LEU A 223 PHE A 226 0 SHEET 2 C 2 TYR A 294 VAL A 297 1 N LYS A 295 O LEU A 223 SHEET 1 D 3 TYR A 275 SER A 276 0 SHEET 2 D 3 VAL A 238 ARG A 239 -1 O ARG A 239 N TYR A 275 SHEET 3 D 3 ALA A 306 CYS A 307 1 N CYS A 307 O VAL A 238 SHEET 1 E 7 GLU B 61 GLU B 64 0 SHEET 2 E 7 PRO B 29 ASP B 33 1 O PRO B 29 N GLU B 61 SHEET 3 E 7 LYS B 4 THR B 8 1 O VAL B 5 N VAL B 30 SHEET 4 E 7 PHE B 82 HIS B 87 1 N MET B 83 O LYS B 4 SHEET 5 E 7 ASN B 126 SER B 132 1 O ASN B 126 N VAL B 85 SHEET 6 E 7 ASN B 179 TYR B 185 1 O ASN B 179 N LEU B 127 SHEET 7 E 7 CYS B 264 LEU B 269 1 O ARG B 265 N LEU B 182 SHEET 1 F 3 GLY B 274 SER B 276 0 SHEET 2 F 3 VAL B 238 HIS B 243 -1 O ARG B 239 N TYR B 275 SHEET 3 F 3 ASN B 187 THR B 189 1 O ASN B 187 N ILE B 242 SHEET 1 G 3 GLY B 274 SER B 276 0 SHEET 2 G 3 VAL B 238 HIS B 243 -1 O ARG B 239 N TYR B 275 SHEET 3 G 3 ALA B 306 CYS B 307 1 N CYS B 307 O VAL B 238 SHEET 1 H 2 LEU B 223 PHE B 226 0 SHEET 2 H 2 TYR B 294 VAL B 297 1 N LYS B 295 O LEU B 223
LINK MG MG A 960 O HOH A1292 1555 3645 2.56 LINK MG MG A 960 O HOH A1313 1555 3645 2.52 LINK MG MG A 960 O HOH A1941 1555 3645 2.62 LINK MG MG A 960 O HOH A1409 1555 3645 2.42 LINK MG MG A 960 O HOH A1749 1555 3645 2.70 LINK MG MG A 960 O HOH A1287 1555 3645 2.34
CISPEP 1 LEU A 142 PRO A 143 0 -2.92 CISPEP 2 LEU B 142 PRO B 143 0 -1.15
SITE 1 AC1 4 LYS A 100 PRO A 101 LEU A 102 HOH B1278 SITE 1 AC2 4 HOH A1349 LYS B 100 PRO B 101 LEU B 102 SITE 1 AC3 3 LYS A 4 TYR A 80 SER A 81 SITE 1 AC4 6 HOH A1287 HOH A1292 HOH A1313 HOH A1409 SITE 2 AC4 6 HOH A1749 HOH A1941 SITE 1 AC5 34 GLY A 9 GLY A 12 TYR A 13 ILE A 14 SITE 2 AC5 34 ASP A 33 ASN A 34 PHE A 35 HIS A 36 SITE 3 AC5 34 ASN A 37 MET A 65 ASP A 66 ILE A 67 SITE 4 AC5 34 PHE A 88 ALA A 89 GLY A 90 LYS A 92 SITE 5 AC5 34 SER A 130 SER A 131 SER A 132 TYR A 157 SITE 6 AC5 34 LYS A 161 TYR A 185 PRO A 188 UD1 A 401 SITE 7 AC5 34 HOH A1101 HOH A1104 HOH A1113 HOH A1129 SITE 8 AC5 34 HOH A1141 HOH A1161 HOH A1203 HOH A1335 SITE 9 AC5 34 HOH A1482 HOH A1518 SITE 1 AC6 28 VAL A 94 SER A 132 THR A 134 ASN A 187 SITE 2 AC6 28 ASN A 206 ASN A 207 LEU A 208 LEU A 223 SITE 3 AC6 28 ASN A 224 VAL A 225 PHE A 226 GLY A 237 SITE 4 AC6 28 ARG A 239 TYR A 241 VAL A 277 ARG A 300 SITE 5 AC6 28 ASP A 303 NAD A 400 HOH A1189 HOH A1206 SITE 6 AC6 28 HOH A1208 HOH A1254 HOH A1308 HOH A1518 SITE 7 AC6 28 HOH A1519 HOH A1534 HOH A1598 HOH A1775 SITE 1 AC7 29 GLY B 9 GLY B 12 TYR B 13 ILE B 14 SITE 2 AC7 29 ASP B 33 ASN B 34 HIS B 36 ASN B 37 SITE 3 AC7 29 MET B 65 ASP B 66 ILE B 67 PHE B 88 SITE 4 AC7 29 ALA B 89 GLY B 90 LYS B 92 SER B 130 SITE 5 AC7 29 SER B 131 TYR B 157 LYS B 161 TYR B 185 SITE 6 AC7 29 PHE B 186 PRO B 188 UD1 B 901 HOH B1100 SITE 7 AC7 29 HOH B1105 HOH B1122 HOH B1194 HOH B1299 SITE 8 AC7 29 HOH B1643 SITE 1 AC8 27 LYS B 92 VAL B 94 SER B 132 TYR B 157 SITE 2 AC8 27 TYR B 185 PHE B 186 ASN B 187 ASN B 206 SITE 3 AC8 27 ASN B 207 LEU B 208 ASN B 224 VAL B 225 SITE 4 AC8 27 PHE B 226 GLY B 237 ARG B 239 TYR B 241 SITE 5 AC8 27 ARG B 300 ASP B 303 NAD B 900 HOH B1121 SITE 6 AC8 27 HOH B1135 HOH B1158 HOH B1200 HOH B1204 SITE 7 AC8 27 HOH B1228 HOH B1255 HOH B1698
CRYST1 63.400 88.900 118.700 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.015773 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011249 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008425 0.00000