10 20 30 40 50 60 70 80 1HZ7 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 23-JAN-01 1HZ7
TITLE THE COMPLEX STRUCTURE OF FARNESYLTRANSFERASE BOUND WITH TITLE 2 FARNESYL PYROPHOSPHATE, ZINC AND MAGNESIUM
CAVEAT 1HZ7 CHIRALITY ERROR AT CA CENTER OF LEU 188.
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FTASE-ALPHA; COMPND 5 EC: 2.5.1.21; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN FARNESYLTRANSFERASE BETA SUBUNIT; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: FTASE-BETA; COMPND 10 EC: 2.5.1.21
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 6 ORGANISM_COMMON: RAT
KEYWDS MAGNESIUM, ENZYME CATALYSIS
EXPDTA THEORETICAL MODEL
AUTHOR Y.-P.PANG,K.XU,F.G.PRENDERGAST
REVDAT 1 17-JUN-03 1HZ7 0
JRNL AUTH Y.-P.PANG,K.XU,F.G.PRENDERGAST JRNL TITL MOLECULAR DYNAMICS SIMULATION OF JRNL TITL 2 FARNESYLTRANSFERASE COMPLEXED WITH CO-SUBSTRATE JRNL TITL 3 FARNESYL PYROPHOSPHATE: INSIGHTS INTO ENZYMATIC JRNL TITL 4 CATALYSIS AND STRUCTURE-BASED DRUG DESIGN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1HZ7 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-2001. REMARK 100 THE RCSB ID CODE IS RCSB012706.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THE STRUCTURE IS A TIME-AVERAGE STRUCTURE DERIVED FROM REMARK 220 A 2-NANOSECOND MOLECULAR DYNAMICS SIMULATION OF THE RAT REMARK 220 FARNESYLTRANSFERASE COMPLEXED WITH FARNESYL REMARK 220 PYROPHOSPHATE CONTAINING ZINC, MAGNESIUM IONS AND ACTIVE REMARK 220 SITE WATER MOLECULES.
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP B 451 CG ASP B 451 OD2 0.096 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 403 CB - CA - C ANGL. DEV. = 14.2 DEGREES REMARK 500 LEU B 403 CA - CB - CG ANGL. DEV. = 17.0 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 207 47.53 113.72 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR B 182 ASP B 183 141.12 REMARK 500 PRO B 413 ALA B 414 -147.77
REMARK 525 REMARK 525 SOLVENT REMARK 525 THE FOLLOWING SOLVENT MOLECULES LIE FARTHER THAN EXPECTED REMARK 525 FROM THE PROTEIN OR NUCLEIC ACID MOLECULE AND MAY BE REMARK 525 ASSOCIATED WITH A SYMMETRY RELATED MOLECULE (M=MODEL REMARK 525 NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH 522 DISTANCE = 5.05 ANGSTROMS
DBREF 1HZ7 A 1 132 UNP Q04631 PFTA_RAT 116 247 DBREF 1HZ7 B 133 498 UNP Q02293 PFTB_RAT 41 406
SEQRES 1 A 132 ALA PHE LYS LEU THR ARG ASP ALA ILE GLU LEU ASN ALA SEQRES 2 A 132 ALA ASN TYR THR VAL TRP HIS PHE ARG ARG VAL LEU LEU SEQRES 3 A 132 ARG SER LEU GLN LYS ASP LEU GLN GLU GLU MET ASN TYR SEQRES 4 A 132 ILE ILE ALA ILE ILE GLU GLU GLN PRO LYS ASN TYR GLN SEQRES 5 A 132 VAL TRP HIS HIS ARG ARG VAL LEU VAL GLU TRP LEU LYS SEQRES 6 A 132 ASP PRO SER GLN GLU LEU GLU PHE ILE ALA ASP ILE LEU SEQRES 7 A 132 ASN GLN ASP ALA LYS ASN TYR HIS ALA TRP GLN HIS ARG SEQRES 8 A 132 GLN TRP VAL ILE GLN GLU PHE ARG LEU TRP ASP ASN GLU SEQRES 9 A 132 LEU GLN TYR VAL ASP GLN LEU LEU LYS GLU ASP VAL ARG SEQRES 10 A 132 ASN ASN SER VAL TRP ASN GLN ARG HIS PHE VAL ILE SER SEQRES 11 A 132 ASN THR SEQRES 1 B 366 GLU THR VAL THR SER ILE GLU GLN ALA LYS VAL GLU GLU SEQRES 2 B 366 LYS ILE GLN GLU VAL PHE SER SER TYR LYS PHE ASN HIS SEQRES 3 B 366 LEU VAL PRO ARG LEU VAL LEU GLN ARG GLU LYS HIS PHE SEQRES 4 B 366 HIS TYR LEU LYS ARG GLY LEU ARG GLN LEU THR ASP ALA SEQRES 5 B 366 TYR GLU CYS LEU ASP ALA SER ARG PRO TRP LEU CYS TYR SEQRES 6 B 366 TRP ILE LEU HIS SER LEU GLU LEU LEU ASP GLU PRO ILE SEQRES 7 B 366 PRO GLN ILE VAL ALA THR ASP VAL CYS GLN PHE LEU GLU SEQRES 8 B 366 LEU CYS GLN SER PRO ASP GLY GLY PHE GLY GLY GLY PRO SEQRES 9 B 366 GLY GLN TYR PRO HIS LEU ALA PRO THR TYR ALA ALA VAL SEQRES 10 B 366 ASN ALA LEU CYS ILE ILE GLY THR GLU GLU ALA TYR ASN SEQRES 11 B 366 VAL ILE ASN ARG GLU LYS LEU LEU GLN TYR LEU TYR SER SEQRES 12 B 366 LEU LYS GLN PRO ASP GLY SER PHE LEU MET HIS VAL GLY SEQRES 13 B 366 GLY GLU VAL ASP VAL ARG SER ALA TYR CYS ALA ALA SER SEQRES 14 B 366 VAL ALA SER LEU THR ASN ILE ILE THR PRO ASP LEU PHE SEQRES 15 B 366 GLU GLY THR ALA GLU TRP ILE ALA ARG CYS GLN ASN TRP SEQRES 16 B 366 GLU GLY GLY ILE GLY GLY VAL PRO GLY MET GLU ALA HIS SEQRES 17 B 366 GLY GLY TYR THR PHE CYS GLY LEU ALA ALA LEU VAL ILE SEQRES 18 B 366 LEU LYS LYS GLU ARG SER LEU ASN LEU LYS SER LEU LEU SEQRES 19 B 366 GLN TRP VAL THR SER ARG GLN MET ARG PHE GLU GLY GLY SEQRES 20 B 366 PHE GLN GLY ARG CYS ASN LYS LEU VAL ASP GLY CYS TYR SEQRES 21 B 366 SER PHE TRP GLN ALA GLY LEU LEU PRO LEU LEU HIS ARG SEQRES 22 B 366 ALA LEU HIS ALA GLN GLY ASP PRO ALA LEU SER MET SER SEQRES 23 B 366 HIS TRP MET PHE HIS GLN GLN ALA LEU GLN GLU TYR ILE SEQRES 24 B 366 LEU MET CYS CYS GLN CYS PRO ALA GLY GLY LEU LEU ASP SEQRES 25 B 366 LYS PRO GLY LYS SER ARG ASP PHE TYR HIS THR CYS TYR SEQRES 26 B 366 CYS LEU SER GLY LEU SER ILE ALA GLN HIS PHE GLY SER SEQRES 27 B 366 GLY ALA MET LEU HIS ASP VAL VAL MET GLY VAL PRO GLU SEQRES 28 B 366 ASN VAL LEU GLN PRO THR HIS PRO VAL TYR ASN ILE GLY SEQRES 29 B 366 PRO ASP
HET ZN B 499 1 HET MG B 501 1 HET FPP 502 24
HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM FPP FARNESYL DIPHOSPHATE
FORMUL 3 ZN ZN 2+ FORMUL 4 MG MG 2+ FORMUL 5 FPP C15 H28 O7 P2 FORMUL 6 HOH *25(H2 O1)
HELIX 1 1 ALA A 1 ALA A 13 1 13 HELIX 2 2 ASN A 15 LEU A 29 1 15 HELIX 3 3 ASP A 32 GLN A 47 1 16 HELIX 4 4 ASN A 50 LYS A 65 1 16 HELIX 5 5 PRO A 67 ASP A 81 1 15 HELIX 6 6 ASN A 84 ARG A 99 1 16 HELIX 7 7 LEU A 100 ASP A 115 1 16 HELIX 8 8 ASN A 118 THR A 132 1 15 HELIX 9 9 THR B 134 LYS B 155 1 22 HELIX 10 10 GLN B 166 GLN B 180 1 15 HELIX 11 11 THR B 182 GLU B 186 5 5 HELIX 12 12 TYR B 185 ALA B 190 5 6 HELIX 13 13 SER B 191 ASP B 207 1 17 HELIX 14 14 PRO B 211 LEU B 224 1 14 HELIX 15 15 HIS B 241 GLY B 256 1 16 HELIX 16 16 THR B 257 VAL B 263 1 7 HELIX 17 17 ASN B 265 LYS B 277 1 13 HELIX 18 18 ASP B 292 THR B 306 1 15 HELIX 19 19 PRO B 311 GLU B 315 5 5 HELIX 20 20 GLY B 316 ARG B 323 1 8 HELIX 21 21 HIS B 340 LEU B 354 1 15 HELIX 22 22 LYS B 356 LEU B 360 5 5 HELIX 23 23 ASN B 361 SER B 371 1 11 HELIX 24 24 CYS B 391 GLN B 396 1 6 HELIX 25 25 PRO B 401 ALA B 409 1 9 HELIX 26 26 HIS B 423 CYS B 435 1 13 HELIX 27 27 PHE B 452 GLN B 466 1 15 HELIX 28 28 VAL B 481 VAL B 485 5 5
SHEET 1 A 2 LEU B 442 LYS B 445 0 SHEET 2 A 2 LYS B 448 ASP B 451 -1 N LYS B 448 O LYS B 445 SHEET 1 B 2 HIS B 467 SER B 470 0 SHEET 2 B 2 MET B 473 ASP B 476 -1 O MET B 473 N SER B 470
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000