10 20 30 40 50 60 70 80 1HVZ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ANTIMICROBIAL PROTEIN 09-JAN-01 1HVZ
TITLE RTD-1, A CYCLIC ANTIMICROBIAL DEFENSIN FROM RHESUS MACAQUE TITLE 2 LEUKOCYTES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: THETA DEFENSIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RTD-1; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. SOURCE 4 THIS SEQUENCE OCCURS NATURALLY IN RHESUS MACAQUES (MUCACA SOURCE 5 MULATTA)
KEYWDS CYCLIC, BETA-SHEET, DISULFIDE-RICH, ANTIMICROBIAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR D.J.CRAIK,M.TRABI,H.J.SCHIRRA
REVDAT 2 24-FEB-09 1HVZ 1 VERSN REVDAT 1 30-MAY-01 1HVZ 0
JRNL AUTH M.TRABI,H.J.SCHIRRA,D.J.CRAIK JRNL TITL THREE-DIMENSIONAL STRUCTURE OF RTD-1, A CYCLIC JRNL TITL 2 ANTIMICROBIAL DEFENSIN FROM RHESUS MACAQUE JRNL TITL 3 LEUKOCYTES. JRNL REF BIOCHEMISTRY V. 40 4211 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11284676 JRNL DOI 10.1021/BI002028T
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 94 RESTRAINTS, 87 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 7 REMARK 3 DIHEDRAL ANGLE RESTRAINTS
REMARK 4 REMARK 4 1HVZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-01. REMARK 100 THE RCSB ID CODE IS RCSB012617.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310; 300; 280 REMARK 210 PH : 4.5; 4.5; 4.5 REMARK 210 IONIC STRENGTH : 20MM SODIUM PHOSPHATE; 20MM REMARK 210 SODIUM PHOSPHATE; 20MM SODIUM REMARK 210 PHOSPHATE REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM RTD-1, 20MM SODIUM REMARK 210 PHOSPHATE PH 4.5, 80% H2O, 10% REMARK 210 D2O, 10% ACETONITRILE-D3; 1MM REMARK 210 RTD-1, 20MM SODIUM PHOSPHATE REMARK 210 PH 4.5, 90% H2O, 10% D2O; 1MM REMARK 210 RTD-1, 20MM SODIUM PHOSPHATE REMARK 210 PH 4.5, 99% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX, ARX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, CCNMR, X-PLOR REMARK 210 3.851, CNS 1.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING, EXPLICIT REMARK 210 INCLUSION OF WATER MOLECULES REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 9 79.33 -62.53 REMARK 500 2 LEU A 6 69.01 -106.65 REMARK 500 2 ARG A 9 79.60 -60.82 REMARK 500 2 CYS A 14 58.55 -110.16 REMARK 500 3 ARG A 9 78.36 -61.77 REMARK 500 4 CYS A 5 66.83 -118.43 REMARK 500 4 CYS A 7 146.59 69.83 REMARK 500 4 ARG A 9 80.62 -63.76 REMARK 500 4 CYS A 12 55.37 -96.82 REMARK 500 4 CYS A 14 174.42 65.52 REMARK 500 5 PHE A 2 135.51 -178.26 REMARK 500 5 ARG A 9 79.09 -61.78 REMARK 500 6 ARG A 4 -64.57 -122.44 REMARK 500 6 ARG A 9 80.93 -67.61 REMARK 500 6 ARG A 13 79.33 -103.79 REMARK 500 7 ARG A 9 78.77 -65.13 REMARK 500 7 CYS A 16 74.48 58.05 REMARK 500 8 PHE A 2 146.01 -178.24 REMARK 500 8 ARG A 9 79.98 -60.01 REMARK 500 9 ARG A 4 -24.89 -161.10 REMARK 500 9 ARG A 9 78.51 -63.42 REMARK 500 9 ARG A 13 26.70 -161.11 REMARK 500 9 CYS A 14 81.49 58.61 REMARK 500 10 LEU A 6 55.33 -113.27 REMARK 500 10 ARG A 9 78.21 -61.36 REMARK 500 11 ARG A 9 77.69 -63.62 REMARK 500 11 CYS A 12 52.32 -109.98 REMARK 500 11 ARG A 13 61.97 -158.97 REMARK 500 11 CYS A 14 82.83 56.55 REMARK 500 12 ARG A 9 77.95 -65.87 REMARK 500 13 PHE A 2 146.61 -177.43 REMARK 500 13 CYS A 7 107.80 -51.71 REMARK 500 13 ARG A 9 81.10 -66.04 REMARK 500 13 ARG A 13 -16.21 179.67 REMARK 500 13 CYS A 16 146.68 72.13 REMARK 500 14 ARG A 9 79.76 -63.18 REMARK 500 14 CYS A 14 94.41 -64.82 REMARK 500 14 CYS A 16 143.96 76.92 REMARK 500 15 ARG A 9 80.07 -67.41 REMARK 500 16 PHE A 2 142.65 -171.08 REMARK 500 16 CYS A 5 44.79 -107.56 REMARK 500 16 CYS A 7 152.78 68.93 REMARK 500 16 ARG A 9 78.94 -62.44 REMARK 500 17 ARG A 9 79.72 -66.23 REMARK 500 17 CYS A 16 100.81 63.93 REMARK 500 18 ARG A 9 79.40 -64.32 REMARK 500 19 PHE A 2 139.64 -172.95 REMARK 500 19 CYS A 7 149.18 71.65 REMARK 500 19 ARG A 9 82.34 -65.26 REMARK 500 19 CYS A 14 131.11 68.02 REMARK 500 20 PHE A 2 148.48 -172.37 REMARK 500 20 ARG A 9 79.30 -67.33 REMARK 500 REMARK 500 REMARK: NULL
REMARK 999 REMARK 999 SEQUENCE RESIDUES NUMBERED ACCORDING TO TANG ET AL., SCIENCE 286 REMARK 999 (1999), PP. 498-502
DBREF 1HVZ A 1 12 GB 7512249 C59089 7 18 DBREF 1HVZ A 13 18 GB 7512249 C59089 1 6
SEQRES 1 A 18 GLY PHE CYS ARG CYS LEU CYS ARG ARG GLY VAL CYS ARG SEQRES 2 A 18 CYS ILE CYS THR ARG
SHEET 1 A 2 CYS A 5 ARG A 8 0 SHEET 2 A 2 VAL A 11 CYS A 14 -1 O VAL A 11 N ARG A 8
SSBOND 1 CYS A 3 CYS A 16 1555 1555 2.03 SSBOND 2 CYS A 5 CYS A 14 1555 1555 2.03 SSBOND 3 CYS A 7 CYS A 12 1555 1555 2.03
LINK N GLY A 1 C ARG A 18 1555 1555 1.33
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000