10 20 30 40 50 60 70 80 1HSM - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA-BINDING 17-NOV-94 1HSM
TITLE THE STRUCTURE OF THE HMG BOX AND ITS INTERACTION WITH DNA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIGH MOBILITY GROUP PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; SOURCE 3 ORGANISM_COMMON: CHINESE HAMSTER; SOURCE 4 ORGANISM_TAXID: 10029; SOURCE 5 GENE: INSERT DERIVED BY PCR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH5 ALPHA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PGEX-2T; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-2T GENE: INSERT DERIVED BY SOURCE 11 PCR
KEYWDS DNA-BINDING
EXPDTA SOLUTION NMR
AUTHOR C.M.READ,P.D.CARY,C.CRANE-ROBINSON,P.C.DRISCOLL, AUTHOR 2 M.O.M.CARILLO,D.G.NORMAN
REVDAT 2 24-FEB-09 1HSM 1 VERSN REVDAT 1 07-FEB-95 1HSM 0
JRNL AUTH C.M.READ,P.D.CARY,C.CRANE-ROBINSON,P.C.DRISCOLL, JRNL AUTH 2 M.O.M.CARILLO,D.G.NORMAN JRNL TITL THE STRUCTURE OF THE HMG BOX AND ITS INTERACTION JRNL TITL 2 WITH DNA JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.M.READ,P.D.CARY,C.CRANE-ROBINSON,P.C.DRISCOLL, REMARK 1 AUTH 2 D.G.NORMAN REMARK 1 TITL SOLUTION STRUCTURE OF A DNA-BINDING DOMAIN FROM REMARK 1 TITL 2 HMG1 REMARK 1 REF NUCLEIC ACIDS RES. V. 21 3427 1993 REMARK 1 REFN ISSN 0305-1048
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SIMULATED ANNEALING, X-PLOR 3.0 REMARK 3 AUTHORS : NILGES (SIMULATED ANNEALING), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1HSM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 19 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 TRP A 43 CG - CD1 - NE1 ANGL. DEV. = -7.6 DEGREES REMARK 500 TRP A 43 CD1 - NE1 - CE2 ANGL. DEV. = 8.5 DEGREES REMARK 500 TRP A 43 NE1 - CE2 - CZ2 ANGL. DEV. = 8.3 DEGREES REMARK 500 TRP A 43 NE1 - CE2 - CD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 4 90.05 116.46 REMARK 500 PRO A 9 169.13 -27.06 REMARK 500 ALA A 11 -51.97 133.48 REMARK 500 ARG A 20 -64.58 -20.12 REMARK 500 PRO A 28 37.43 -77.91 REMARK 500 ALA A 47 -52.65 129.84 REMARK 500 ALA A 48 -42.06 109.67 REMARK 500 GLN A 52 -57.98 -26.10 REMARK 500 LYS A 75 68.85 149.10 REMARK 500 LYS A 77 156.19 -22.44 REMARK 500 ALA A 80 -54.28 -131.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 7 0.30 SIDE_CHAIN REMARK 500 ARG A 20 0.32 SIDE_CHAIN REMARK 500 ARG A 73 0.16 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 82
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HSN RELATED DB: PDB
DBREF 1HSM A 3 81 UNP P07156 HMG1_CRIGR 92 170
SEQRES 1 A 79 ASN ALA PRO LYS ARG PRO PRO SER ALA PHE PHE LEU PHE SEQRES 2 A 79 CYS SER GLU TYR ARG PRO LYS ILE LYS GLY GLU HIS PRO SEQRES 3 A 79 GLY LEU SER ILE GLY ASP VAL ALA LYS LYS LEU GLY GLU SEQRES 4 A 79 MET TRP ASN ASN THR ALA ALA ASP ASP LYS GLN PRO TYR SEQRES 5 A 79 GLU LYS LYS ALA ALA LYS LEU LYS GLU LYS TYR GLU LYS SEQRES 6 A 79 ASP ILE ALA ALA TYR ARG ALA LYS GLY LYS PRO ASP ALA SEQRES 7 A 79 ALA
HET BME A 82 9
HETNAM BME BETA-MERCAPTOETHANOL
FORMUL 2 BME C2 H6 O S
HELIX 1 H1 PHE A 12 GLU A 18 1 7 HELIX 2 H1' PRO A 21 GLU A 26 1H1 AND H1' BEND AROUND H2 6 HELIX 3 H2 GLY A 33 ASN A 44 1 12 HELIX 4 H3 PRO A 53 ARG A 73 1 21
LINK SG CYS A 16 S2 BME A 82 1555 1555 2.02
SITE 1 AC1 4 CYS A 16 SER A 17 ILE A 32 ALA A 36
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000