1HS1 - Header Asymmetric Unit

HEADER RNA 22-DEC-00 1HS1

TITLE SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UUAACU AS PART OF TITLE 2 HAIRPIN R(GCGUUAACUCGCA)

COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-R(*GP*CP*GP*UP*UP*AP*AP*CP*UP*CP*GP*CP*A)-3'; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES

KEYWDS RIBONUCLEIC ACID, HAIRPIN LOOP, RNA STRUCTURE

EXPDTA SOLUTION NMR

AUTHOR H.ZHANG,M.CULYBA,H.VOLKMAN,T.R.KRUGH

REVDAT 2 24-FEB-09 1HS1 1 VERSN REVDAT 1 02-SEP-03 1HS1 0

JRNL AUTH H.ZHANG,M.CULYBA,H.VOLKMAN,T.R.KRUGH JRNL TITL STRUCTURAL CHARACTERIZATION OF SIX-NUCLEOTIDE RNA JRNL TITL 2 HAIRPIN LOOPS: R(UUAAUU), R(UUAAAU), R(UUAACU) JRNL REF TO BE PUBLISHED JRNL REFN

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVER VERSION 2.98 REMARK 3 AUTHORS : MSI REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1HS1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-01. REMARK 100 THE RCSB ID CODE IS RCSB012552.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.1 M NACL, 0.01 M SODIUM REMARK 210 PHOSPHATE REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 1 MM RNA OLIGOMER - H2O; 3 MM REMARK 210 RNA OLIGOMER - D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DISCOVER VERSION 2.98 REMARK 210 METHOD USED : RESTRAINED MOLECULAR DYNAMICS REMARK 210 & ENERGY MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : AVERAGE STRUCTURE OF 30 REMARK 210 CONFORMERS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 C A 2 N1 C A 2 C6 0.110 REMARK 500 U A 4 N1 U A 4 C6 0.102 REMARK 500 U A 5 N1 U A 5 C6 0.101 REMARK 500 U A 9 N1 U A 9 C6 0.098 REMARK 500 C A 10 N1 C A 10 C6 0.112 REMARK 500 C A 12 N1 C A 12 C6 0.109 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 C A 2 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 U A 4 O4' - C1' - N1 ANGL. DEV. = 5.2 DEGREES REMARK 500 U A 4 N1 - C2 - N3 ANGL. DEV. = 4.5 DEGREES REMARK 500 U A 5 N1 - C2 - N3 ANGL. DEV. = 4.4 DEGREES REMARK 500 A A 6 C8 - N9 - C4 ANGL. DEV. = 3.2 DEGREES REMARK 500 A A 7 C8 - N9 - C4 ANGL. DEV. = 3.0 DEGREES REMARK 500 C A 8 O4' - C1' - N1 ANGL. DEV. = 5.6 DEGREES REMARK 500 U A 9 O4' - C1' - N1 ANGL. DEV. = 5.2 DEGREES REMARK 500 U A 9 N1 - C2 - N3 ANGL. DEV. = 4.1 DEGREES REMARK 500 C A 10 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 C A 12 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 A A 13 C8 - N9 - C4 ANGL. DEV. = 2.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 U A 9 0.09 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HS2 RELATED DB: PDB REMARK 900 RNA HAIRPIN LOOP UUAAGU AS PART OF HAIRPIN R(GCGUUAAGUCGCA) REMARK 900 RELATED ID: 1HS3 RELATED DB: PDB REMARK 900 RNA HAIRPIN LOOP UUAAUU AS PART OF HAIRPIN R(GCGUUAAUUCGCA) REMARK 900 RELATED ID: 1HS4 RELATED DB: PDB REMARK 900 RNA HAIRPIN LOOP UUAAAU AS PART OF HAIRPIN R(GCGUUAAAUCGCA) REMARK 900 RELATED ID: 1HS8 RELATED DB: PDB REMARK 900 RNA HAIRPIN LOOP UCAAUU AS PART OF HAIRPIN R(GCGUCAAUUCGCA)

DBREF 1HS1 A 1 13 PDB 1HS1 1HS1 1 13

SEQRES 1 A 13 G C G U U A A C U C G C A

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000