10 20 30 40 50 60 70 80 1HQH - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 16-DEC-00 1HQH
TITLE CRYSTAL STRUCTURE OF THE BINUCLEAR MANGANESE METALLOENZYME TITLE 2 ARGINASE COMPLEXED WITH NOR-N-HYDROXY-L-ARGININE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGINASE 1; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 3.5.3.1; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS BINUCLEAR MANGANESE CLUSTER, SUBSTRATE ANALOGUE, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR J.D.COX,E.CAMA,D.M.COLLELUORI,D.E.ASH,D.W.CHRISTIANSON
REVDAT 3 24-FEB-09 1HQH 1 VERSN REVDAT 2 01-APR-03 1HQH 1 JRNL REVDAT 1 04-APR-01 1HQH 0
JRNL AUTH J.D.COX,E.CAMA,D.M.COLLELUORI,S.PETHE,J.L.BOUCHER, JRNL AUTH 2 D.MANSUY,D.E.ASH,D.W.CHRISTIANSON JRNL TITL MECHANISTIC AND METABOLIC INFERENCES FROM THE JRNL TITL 2 BINDING OF SUBSTRATE ANALOGUES AND PRODUCTS TO JRNL TITL 3 ARGINASE. JRNL REF BIOCHEMISTRY V. 40 2689 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11258880 JRNL DOI 10.1021/BI002318+
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 22632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.286 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1074 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7185 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 21 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.50 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1HQH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-00. REMARK 100 THE RCSB ID CODE IS RCSB012519.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22632 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.31900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, BICINE, MANGANESE REMARK 280 CHLORIDE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.93333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.46667 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 LYS A 4 REMARK 465 PRO A 5 REMARK 465 LYS A 320 REMARK 465 PRO A 321 REMARK 465 PRO A 322 REMARK 465 LYS A 323 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 LYS B 4 REMARK 465 PRO B 5 REMARK 465 LYS B 320 REMARK 465 PRO B 321 REMARK 465 PRO B 322 REMARK 465 LYS B 323 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 SER C 3 REMARK 465 LYS C 4 REMARK 465 PRO C 5 REMARK 465 LYS C 320 REMARK 465 PRO C 321 REMARK 465 PRO C 322 REMARK 465 LYS C 323
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 14 85.60 -44.88 REMARK 500 SER A 16 -3.45 -153.19 REMARK 500 VAL A 24 -32.37 -38.99 REMARK 500 LEU A 53 160.74 -48.23 REMARK 500 PHE A 64 89.73 -45.99 REMARK 500 GLN A 65 -127.35 72.34 REMARK 500 VAL A 67 126.33 -37.00 REMARK 500 ASN A 69 37.32 33.61 REMARK 500 SER A 107 -50.80 -27.75 REMARK 500 THR A 135 148.38 -34.68 REMARK 500 ASN A 139 99.59 -40.99 REMARK 500 HIS A 141 -4.59 -57.40 REMARK 500 GLN A 143 -15.41 -144.90 REMARK 500 PRO A 144 -49.12 -28.82 REMARK 500 GLU A 151 0.74 -60.39 REMARK 500 SER A 163 -33.74 -35.93 REMARK 500 PRO A 167 106.93 -44.89 REMARK 500 ALA A 171 6.05 -55.75 REMARK 500 ARG A 180 2.24 -157.20 REMARK 500 ILE A 208 -30.25 -38.54 REMARK 500 PHE A 216 -74.25 -69.50 REMARK 500 ARG A 222 -92.98 -78.15 REMARK 500 GLU A 277 -0.22 69.71 REMARK 500 PRO A 280 -0.19 -45.15 REMARK 500 PHE A 304 40.75 -105.15 REMARK 500 THR A 306 114.62 -34.19 REMARK 500 GLU A 315 -35.04 73.28 REMARK 500 PRO B 14 85.56 -44.82 REMARK 500 SER B 16 -3.47 -153.21 REMARK 500 VAL B 24 -32.40 -38.92 REMARK 500 LEU B 53 160.74 -48.22 REMARK 500 PHE B 64 89.72 -45.93 REMARK 500 GLN B 65 -127.38 72.30 REMARK 500 VAL B 67 126.33 -36.96 REMARK 500 ASN B 69 37.31 33.63 REMARK 500 SER B 107 -50.73 -27.79 REMARK 500 THR B 135 148.41 -34.70 REMARK 500 ASN B 139 99.60 -41.02 REMARK 500 HIS B 141 -4.55 -57.43 REMARK 500 GLN B 143 -15.38 -144.93 REMARK 500 PRO B 144 -49.11 -28.84 REMARK 500 GLU B 151 0.74 -60.39 REMARK 500 SER B 163 -33.72 -35.93 REMARK 500 PRO B 167 106.93 -44.90 REMARK 500 ALA B 171 6.04 -55.77 REMARK 500 ARG B 180 2.17 -157.18 REMARK 500 ILE B 208 -30.23 -38.56 REMARK 500 PHE B 216 -74.23 -69.52 REMARK 500 ARG B 222 -92.99 -78.13 REMARK 500 GLU B 277 -0.31 69.80 REMARK 500 PRO B 280 -0.26 -45.15 REMARK 500 PHE B 304 40.82 -105.19 REMARK 500 THR B 306 114.60 -34.15 REMARK 500 GLU B 315 -35.05 73.30 REMARK 500 PRO C 14 85.51 -44.82 REMARK 500 SER C 16 -3.42 -153.16 REMARK 500 VAL C 24 -32.37 -38.95 REMARK 500 LEU C 53 160.72 -48.25 REMARK 500 PHE C 64 89.72 -46.04 REMARK 500 GLN C 65 -127.35 72.34 REMARK 500 VAL C 67 126.35 -37.00 REMARK 500 ASN C 69 37.28 33.63 REMARK 500 SER C 107 -50.81 -27.79 REMARK 500 THR C 135 148.40 -34.65 REMARK 500 ASN C 139 99.56 -40.95 REMARK 500 HIS C 141 -4.57 -57.38 REMARK 500 GLN C 143 -15.40 -144.94 REMARK 500 PRO C 144 -49.08 -28.83 REMARK 500 GLU C 151 0.73 -60.41 REMARK 500 SER C 163 -33.72 -35.97 REMARK 500 PRO C 167 106.93 -44.89 REMARK 500 ALA C 171 6.13 -55.78 REMARK 500 ARG C 180 2.24 -157.18 REMARK 500 ILE C 208 -30.24 -38.53 REMARK 500 PHE C 216 -74.24 -69.48 REMARK 500 ARG C 222 -92.91 -78.17 REMARK 500 GLU C 277 -0.22 69.68 REMARK 500 PRO C 280 -0.20 -45.13 REMARK 500 PHE C 304 40.77 -105.13 REMARK 500 THR C 306 114.66 -34.26 REMARK 500 GLU C 315 -35.05 73.33 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 232 OD2 REMARK 620 2 NNH A 901 OH1 68.4 REMARK 620 3 ASP A 124 OD2 71.2 117.5 REMARK 620 4 ASP A 128 OD2 154.2 105.8 91.3 REMARK 620 5 HIS A 101 ND1 98.4 137.4 93.5 101.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 126 ND1 REMARK 620 2 ASP A 232 OD2 178.1 REMARK 620 3 ASP A 234 OD2 111.0 67.1 REMARK 620 4 NNH A 901 OH1 110.6 70.4 105.2 REMARK 620 5 ASP A 124 OD1 97.8 83.1 113.7 118.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 101 ND1 REMARK 620 2 ASP B 128 OD2 101.6 REMARK 620 3 ASP B 232 OD2 98.4 154.2 REMARK 620 4 NNH B 902 OH1 137.4 105.8 68.4 REMARK 620 5 ASP B 124 OD2 93.5 91.3 71.2 117.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 503 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 232 OD2 REMARK 620 2 ASP B 234 OD2 67.1 REMARK 620 3 NNH B 902 OH1 70.4 105.2 REMARK 620 4 ASP B 124 OD1 83.1 113.7 118.6 REMARK 620 5 HIS B 126 ND1 178.1 111.0 110.6 97.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 504 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 128 OD2 REMARK 620 2 HIS C 101 ND1 101.6 REMARK 620 3 ASP C 124 OD2 91.3 93.5 REMARK 620 4 ASP C 232 OD2 154.2 98.4 71.2 REMARK 620 5 NNH C 903 OH1 105.8 137.4 117.5 68.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 505 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 126 ND1 REMARK 620 2 ASP C 124 OD1 97.7 REMARK 620 3 ASP C 232 OD2 178.1 83.1 REMARK 620 4 ASP C 234 OD2 111.0 113.7 67.1 REMARK 620 5 NNH C 903 OH1 110.5 118.6 70.4 105.2 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 500 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 501 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 502 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 503 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 504 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 505 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NNH A 901 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NNH B 902 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NNH C 903
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RLA RELATED DB: PDB REMARK 900 NATIVE ARGINASE
DBREF 1HQH A 1 323 UNP P07824 ARGI1_RAT 1 323 DBREF 1HQH B 1 323 UNP P07824 ARGI1_RAT 1 323 DBREF 1HQH C 1 323 UNP P07824 ARGI1_RAT 1 323
SEQRES 1 A 323 MET SER SER LYS PRO LYS PRO ILE GLU ILE ILE GLY ALA SEQRES 2 A 323 PRO PHE SER LYS GLY GLN PRO ARG GLY GLY VAL GLU LYS SEQRES 3 A 323 GLY PRO ALA ALA LEU ARG LYS ALA GLY LEU VAL GLU LYS SEQRES 4 A 323 LEU LYS GLU THR GLU TYR ASN VAL ARG ASP HIS GLY ASP SEQRES 5 A 323 LEU ALA PHE VAL ASP VAL PRO ASN ASP SER PRO PHE GLN SEQRES 6 A 323 ILE VAL LYS ASN PRO ARG SER VAL GLY LYS ALA ASN GLU SEQRES 7 A 323 GLN LEU ALA ALA VAL VAL ALA GLU THR GLN LYS ASN GLY SEQRES 8 A 323 THR ILE SER VAL VAL LEU GLY GLY ASP HIS SER MET ALA SEQRES 9 A 323 ILE GLY SER ILE SER GLY HIS ALA ARG VAL HIS PRO ASP SEQRES 10 A 323 LEU CYS VAL ILE TRP VAL ASP ALA HIS THR ASP ILE ASN SEQRES 11 A 323 THR PRO LEU THR THR SER SER GLY ASN LEU HIS GLY GLN SEQRES 12 A 323 PRO VAL ALA PHE LEU LEU LYS GLU LEU LYS GLY LYS PHE SEQRES 13 A 323 PRO ASP VAL PRO GLY PHE SER TRP VAL THR PRO CYS ILE SEQRES 14 A 323 SER ALA LYS ASP ILE VAL TYR ILE GLY LEU ARG ASP VAL SEQRES 15 A 323 ASP PRO GLY GLU HIS TYR ILE ILE LYS THR LEU GLY ILE SEQRES 16 A 323 LYS TYR PHE SER MET THR GLU VAL ASP LYS LEU GLY ILE SEQRES 17 A 323 GLY LYS VAL MET GLU GLU THR PHE SER TYR LEU LEU GLY SEQRES 18 A 323 ARG LYS LYS ARG PRO ILE HIS LEU SER PHE ASP VAL ASP SEQRES 19 A 323 GLY LEU ASP PRO VAL PHE THR PRO ALA THR GLY THR PRO SEQRES 20 A 323 VAL VAL GLY GLY LEU SER TYR ARG GLU GLY LEU TYR ILE SEQRES 21 A 323 THR GLU GLU ILE TYR LYS THR GLY LEU LEU SER GLY LEU SEQRES 22 A 323 ASP ILE MET GLU VAL ASN PRO THR LEU GLY LYS THR PRO SEQRES 23 A 323 GLU GLU VAL THR ARG THR VAL ASN THR ALA VAL ALA LEU SEQRES 24 A 323 THR LEU SER CYS PHE GLY THR LYS ARG GLU GLY ASN HIS SEQRES 25 A 323 LYS PRO GLU THR ASP TYR LEU LYS PRO PRO LYS SEQRES 1 B 323 MET SER SER LYS PRO LYS PRO ILE GLU ILE ILE GLY ALA SEQRES 2 B 323 PRO PHE SER LYS GLY GLN PRO ARG GLY GLY VAL GLU LYS SEQRES 3 B 323 GLY PRO ALA ALA LEU ARG LYS ALA GLY LEU VAL GLU LYS SEQRES 4 B 323 LEU LYS GLU THR GLU TYR ASN VAL ARG ASP HIS GLY ASP SEQRES 5 B 323 LEU ALA PHE VAL ASP VAL PRO ASN ASP SER PRO PHE GLN SEQRES 6 B 323 ILE VAL LYS ASN PRO ARG SER VAL GLY LYS ALA ASN GLU SEQRES 7 B 323 GLN LEU ALA ALA VAL VAL ALA GLU THR GLN LYS ASN GLY SEQRES 8 B 323 THR ILE SER VAL VAL LEU GLY GLY ASP HIS SER MET ALA SEQRES 9 B 323 ILE GLY SER ILE SER GLY HIS ALA ARG VAL HIS PRO ASP SEQRES 10 B 323 LEU CYS VAL ILE TRP VAL ASP ALA HIS THR ASP ILE ASN SEQRES 11 B 323 THR PRO LEU THR THR SER SER GLY ASN LEU HIS GLY GLN SEQRES 12 B 323 PRO VAL ALA PHE LEU LEU LYS GLU LEU LYS GLY LYS PHE SEQRES 13 B 323 PRO ASP VAL PRO GLY PHE SER TRP VAL THR PRO CYS ILE SEQRES 14 B 323 SER ALA LYS ASP ILE VAL TYR ILE GLY LEU ARG ASP VAL SEQRES 15 B 323 ASP PRO GLY GLU HIS TYR ILE ILE LYS THR LEU GLY ILE SEQRES 16 B 323 LYS TYR PHE SER MET THR GLU VAL ASP LYS LEU GLY ILE SEQRES 17 B 323 GLY LYS VAL MET GLU GLU THR PHE SER TYR LEU LEU GLY SEQRES 18 B 323 ARG LYS LYS ARG PRO ILE HIS LEU SER PHE ASP VAL ASP SEQRES 19 B 323 GLY LEU ASP PRO VAL PHE THR PRO ALA THR GLY THR PRO SEQRES 20 B 323 VAL VAL GLY GLY LEU SER TYR ARG GLU GLY LEU TYR ILE SEQRES 21 B 323 THR GLU GLU ILE TYR LYS THR GLY LEU LEU SER GLY LEU SEQRES 22 B 323 ASP ILE MET GLU VAL ASN PRO THR LEU GLY LYS THR PRO SEQRES 23 B 323 GLU GLU VAL THR ARG THR VAL ASN THR ALA VAL ALA LEU SEQRES 24 B 323 THR LEU SER CYS PHE GLY THR LYS ARG GLU GLY ASN HIS SEQRES 25 B 323 LYS PRO GLU THR ASP TYR LEU LYS PRO PRO LYS SEQRES 1 C 323 MET SER SER LYS PRO LYS PRO ILE GLU ILE ILE GLY ALA SEQRES 2 C 323 PRO PHE SER LYS GLY GLN PRO ARG GLY GLY VAL GLU LYS SEQRES 3 C 323 GLY PRO ALA ALA LEU ARG LYS ALA GLY LEU VAL GLU LYS SEQRES 4 C 323 LEU LYS GLU THR GLU TYR ASN VAL ARG ASP HIS GLY ASP SEQRES 5 C 323 LEU ALA PHE VAL ASP VAL PRO ASN ASP SER PRO PHE GLN SEQRES 6 C 323 ILE VAL LYS ASN PRO ARG SER VAL GLY LYS ALA ASN GLU SEQRES 7 C 323 GLN LEU ALA ALA VAL VAL ALA GLU THR GLN LYS ASN GLY SEQRES 8 C 323 THR ILE SER VAL VAL LEU GLY GLY ASP HIS SER MET ALA SEQRES 9 C 323 ILE GLY SER ILE SER GLY HIS ALA ARG VAL HIS PRO ASP SEQRES 10 C 323 LEU CYS VAL ILE TRP VAL ASP ALA HIS THR ASP ILE ASN SEQRES 11 C 323 THR PRO LEU THR THR SER SER GLY ASN LEU HIS GLY GLN SEQRES 12 C 323 PRO VAL ALA PHE LEU LEU LYS GLU LEU LYS GLY LYS PHE SEQRES 13 C 323 PRO ASP VAL PRO GLY PHE SER TRP VAL THR PRO CYS ILE SEQRES 14 C 323 SER ALA LYS ASP ILE VAL TYR ILE GLY LEU ARG ASP VAL SEQRES 15 C 323 ASP PRO GLY GLU HIS TYR ILE ILE LYS THR LEU GLY ILE SEQRES 16 C 323 LYS TYR PHE SER MET THR GLU VAL ASP LYS LEU GLY ILE SEQRES 17 C 323 GLY LYS VAL MET GLU GLU THR PHE SER TYR LEU LEU GLY SEQRES 18 C 323 ARG LYS LYS ARG PRO ILE HIS LEU SER PHE ASP VAL ASP SEQRES 19 C 323 GLY LEU ASP PRO VAL PHE THR PRO ALA THR GLY THR PRO SEQRES 20 C 323 VAL VAL GLY GLY LEU SER TYR ARG GLU GLY LEU TYR ILE SEQRES 21 C 323 THR GLU GLU ILE TYR LYS THR GLY LEU LEU SER GLY LEU SEQRES 22 C 323 ASP ILE MET GLU VAL ASN PRO THR LEU GLY LYS THR PRO SEQRES 23 C 323 GLU GLU VAL THR ARG THR VAL ASN THR ALA VAL ALA LEU SEQRES 24 C 323 THR LEU SER CYS PHE GLY THR LYS ARG GLU GLY ASN HIS SEQRES 25 C 323 LYS PRO GLU THR ASP TYR LEU LYS PRO PRO LYS
HET MN A 500 1 HET MN A 501 1 HET MN B 502 1 HET MN B 503 1 HET MN C 504 1 HET MN C 505 1 HET NNH A 901 12 HET NNH B 902 12 HET NNH C 903 12
HETNAM MN MANGANESE (II) ION HETNAM NNH NOR-N-OMEGA-HYDROXY-L-ARGININE
FORMUL 4 MN 6(MN 2+) FORMUL 10 NNH 3(C5 H12 N4 O3) FORMUL 13 HOH *21(H2 O)
HELIX 1 1 GLY A 23 GLU A 25 5 3 HELIX 2 2 LYS A 26 LYS A 33 1 8 HELIX 3 3 GLY A 35 THR A 43 1 9 HELIX 4 4 ARG A 71 ASN A 90 1 20 HELIX 5 5 ASP A 100 SER A 102 5 3 HELIX 6 6 MET A 103 HIS A 115 1 13 HELIX 7 7 ASN A 139 GLY A 142 5 4 HELIX 8 8 GLN A 143 LEU A 149 1 7 HELIX 9 9 LYS A 150 LYS A 153 5 4 HELIX 10 10 ASP A 183 LEU A 193 1 11 HELIX 11 11 MET A 200 GLY A 207 1 8 HELIX 12 12 GLY A 207 GLY A 221 1 15 HELIX 13 13 SER A 253 THR A 267 1 15 HELIX 14 14 THR A 285 PHE A 304 1 20 HELIX 15 15 GLY B 23 GLU B 25 5 3 HELIX 16 16 LYS B 26 LYS B 33 1 8 HELIX 17 17 GLY B 35 THR B 43 1 9 HELIX 18 18 ARG B 71 ASN B 90 1 20 HELIX 19 19 ASP B 100 SER B 102 5 3 HELIX 20 20 MET B 103 HIS B 115 1 13 HELIX 21 21 ASN B 139 GLY B 142 5 4 HELIX 22 22 GLN B 143 LEU B 149 1 7 HELIX 23 23 LYS B 150 LYS B 153 5 4 HELIX 24 24 ASP B 183 LEU B 193 1 11 HELIX 25 25 MET B 200 GLY B 207 1 8 HELIX 26 26 GLY B 207 GLY B 221 1 15 HELIX 27 27 SER B 253 THR B 267 1 15 HELIX 28 28 THR B 285 PHE B 304 1 20 HELIX 29 29 GLY C 23 GLU C 25 5 3 HELIX 30 30 LYS C 26 LYS C 33 1 8 HELIX 31 31 GLY C 35 THR C 43 1 9 HELIX 32 32 ARG C 71 ASN C 90 1 20 HELIX 33 33 ASP C 100 SER C 102 5 3 HELIX 34 34 MET C 103 HIS C 115 1 13 HELIX 35 35 ASN C 139 GLY C 142 5 4 HELIX 36 36 GLN C 143 LEU C 149 1 7 HELIX 37 37 LYS C 150 LYS C 153 5 4 HELIX 38 38 ASP C 183 LEU C 193 1 11 HELIX 39 39 MET C 200 GLY C 207 1 8 HELIX 40 40 GLY C 207 GLY C 221 1 15 HELIX 41 41 SER C 253 THR C 267 1 15 HELIX 42 42 THR C 285 PHE C 304 1 20
SHEET 1 A 8 ASN A 46 ASP A 52 0 SHEET 2 A 8 PRO A 7 GLY A 12 1 N ILE A 8 O ASN A 46 SHEET 3 A 8 ILE A 93 LEU A 97 1 N ILE A 93 O PRO A 7 SHEET 4 A 8 LEU A 270 MET A 276 1 O SER A 271 N SER A 94 SHEET 5 A 8 ILE A 227 ASP A 232 1 O ILE A 227 N SER A 271 SHEET 6 A 8 CYS A 119 VAL A 123 1 O CYS A 119 N HIS A 228 SHEET 7 A 8 ILE A 174 LEU A 179 1 O VAL A 175 N TRP A 122 SHEET 8 A 8 LYS A 196 SER A 199 1 O LYS A 196 N TYR A 176 SHEET 1 B 8 ASN B 46 ASP B 52 0 SHEET 2 B 8 PRO B 7 GLY B 12 1 N ILE B 8 O ASN B 46 SHEET 3 B 8 ILE B 93 LEU B 97 1 N ILE B 93 O PRO B 7 SHEET 4 B 8 LEU B 270 MET B 276 1 O SER B 271 N SER B 94 SHEET 5 B 8 ILE B 227 ASP B 232 1 O ILE B 227 N SER B 271 SHEET 6 B 8 CYS B 119 VAL B 123 1 O CYS B 119 N HIS B 228 SHEET 7 B 8 ILE B 174 LEU B 179 1 O VAL B 175 N TRP B 122 SHEET 8 B 8 LYS B 196 SER B 199 1 O LYS B 196 N TYR B 176 SHEET 1 C 8 ASN C 46 ASP C 52 0 SHEET 2 C 8 PRO C 7 GLY C 12 1 N ILE C 8 O ASN C 46 SHEET 3 C 8 ILE C 93 LEU C 97 1 N ILE C 93 O PRO C 7 SHEET 4 C 8 LEU C 270 MET C 276 1 O SER C 271 N SER C 94 SHEET 5 C 8 ILE C 227 ASP C 232 1 O ILE C 227 N SER C 271 SHEET 6 C 8 CYS C 119 VAL C 123 1 O CYS C 119 N HIS C 228 SHEET 7 C 8 ILE C 174 LEU C 179 1 O VAL C 175 N TRP C 122 SHEET 8 C 8 LYS C 196 SER C 199 1 O LYS C 196 N TYR C 176
LINK MN MN A 500 OD2 ASP A 232 1555 1555 2.66 LINK MN MN A 500 OH1 NNH A 901 1555 1555 2.48 LINK MN MN A 500 OD2 ASP A 124 1555 1555 1.96 LINK MN MN A 500 OD2 ASP A 128 1555 1555 2.04 LINK MN MN A 500 ND1 HIS A 101 1555 1555 2.24 LINK MN MN A 501 ND1 HIS A 126 1555 1555 1.74 LINK MN MN A 501 OD2 ASP A 232 1555 1555 2.42 LINK MN MN A 501 OD2 ASP A 234 1555 1555 1.80 LINK MN MN A 501 OH1 NNH A 901 1555 1555 2.59 LINK MN MN A 501 OD1 ASP A 124 1555 1555 2.32 LINK MN MN B 502 ND1 HIS B 101 1555 1555 2.24 LINK MN MN B 502 OD2 ASP B 128 1555 1555 2.04 LINK MN MN B 502 OD2 ASP B 232 1555 1555 2.66 LINK MN MN B 502 OH1 NNH B 902 1555 1555 2.48 LINK MN MN B 502 OD2 ASP B 124 1555 1555 1.97 LINK MN MN B 503 OD2 ASP B 232 1555 1555 2.42 LINK MN MN B 503 OD2 ASP B 234 1555 1555 1.80 LINK MN MN B 503 OH1 NNH B 902 1555 1555 2.59 LINK MN MN B 503 OD1 ASP B 124 1555 1555 2.32 LINK MN MN B 503 ND1 HIS B 126 1555 1555 1.74 LINK MN MN C 504 OD2 ASP C 128 1555 1555 2.04 LINK MN MN C 504 ND1 HIS C 101 1555 1555 2.24 LINK MN MN C 504 OD2 ASP C 124 1555 1555 1.96 LINK MN MN C 504 OD2 ASP C 232 1555 1555 2.66 LINK MN MN C 504 OH1 NNH C 903 1555 1555 2.48 LINK MN MN C 505 ND1 HIS C 126 1555 1555 1.74 LINK MN MN C 505 OD1 ASP C 124 1555 1555 2.32 LINK MN MN C 505 OD2 ASP C 232 1555 1555 2.42 LINK MN MN C 505 OD2 ASP C 234 1555 1555 1.80 LINK MN MN C 505 OH1 NNH C 903 1555 1555 2.59
CISPEP 1 GLY A 98 GLY A 99 0 -0.12 CISPEP 2 GLY B 98 GLY B 99 0 -0.15 CISPEP 3 GLY C 98 GLY C 99 0 -0.16
SITE 1 AC1 6 HIS A 101 ASP A 124 ASP A 128 ASP A 232 SITE 2 AC1 6 MN A 501 NNH A 901 SITE 1 AC2 6 ASP A 124 HIS A 126 ASP A 232 ASP A 234 SITE 2 AC2 6 MN A 500 NNH A 901 SITE 1 AC3 6 HIS B 101 ASP B 124 ASP B 128 ASP B 232 SITE 2 AC3 6 MN B 503 NNH B 902 SITE 1 AC4 6 ASP B 124 HIS B 126 ASP B 232 ASP B 234 SITE 2 AC4 6 MN B 502 NNH B 902 SITE 1 AC5 6 HIS C 101 ASP C 124 ASP C 128 ASP C 232 SITE 2 AC5 6 MN C 505 NNH C 903 SITE 1 AC6 6 ASP C 124 HIS C 126 ASP C 232 ASP C 234 SITE 2 AC6 6 MN C 504 NNH C 903 SITE 1 AC7 17 HIS A 126 ASP A 128 ASN A 130 THR A 135 SITE 2 AC7 17 SER A 137 ASN A 139 HIS A 141 GLY A 142 SITE 3 AC7 17 ASP A 183 GLU A 186 ASP A 232 ASP A 234 SITE 4 AC7 17 THR A 246 MN A 500 MN A 501 HOH A 606 SITE 5 AC7 17 HOH A 607 SITE 1 AC8 17 HIS B 126 ASP B 128 ASN B 130 THR B 135 SITE 2 AC8 17 SER B 137 ASN B 139 HIS B 141 GLY B 142 SITE 3 AC8 17 ASP B 183 GLU B 186 ASP B 232 ASP B 234 SITE 4 AC8 17 THR B 246 MN B 502 MN B 503 HOH B 613 SITE 5 AC8 17 HOH B 614 SITE 1 AC9 17 HIS C 126 ASP C 128 ASN C 130 THR C 135 SITE 2 AC9 17 SER C 137 ASN C 139 HIS C 141 GLY C 142 SITE 3 AC9 17 ASP C 183 GLU C 186 ASP C 232 ASP C 234 SITE 4 AC9 17 THR C 246 MN C 504 MN C 505 HOH C 620 SITE 5 AC9 17 HOH C 621
CRYST1 88.000 88.000 112.400 90.00 90.00 120.00 P 32 9
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011364 0.006561 0.000000 0.00000
SCALE2 0.000000 0.013122 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008897 0.00000