10 20 30 40 50 60 70 80 1HMA - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA-BINDING 12-MAY-94 1HMA
TITLE THE SOLUTION STRUCTURE AND DYNAMICS OF THE DNA BINDING TITLE 2 DOMAIN OF HMG-D FROM DROSOPHILA MELANOGASTER
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HMG-D; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227
KEYWDS DNA-BINDING
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR D.N.M.JONES,M.A.SEARLES,G.L.SHAW,M.E.A.CHURCHILL,S.S.NER, AUTHOR 2 J.KEELER,A.A.TRAVERS,D.NEUHAUS
REVDAT 3 24-FEB-09 1HMA 1 VERSN REVDAT 2 01-APR-03 1HMA 1 JRNL REVDAT 1 31-JUL-94 1HMA 0
JRNL AUTH D.N.JONES,M.A.SEARLES,G.L.SHAW,M.E.CHURCHILL, JRNL AUTH 2 S.S.NER,J.KEELER,A.A.TRAVERS,D.NEUHAUS JRNL TITL THE SOLUTION STRUCTURE AND DYNAMICS OF THE JRNL TITL 2 DNA-BINDING DOMAIN OF HMG-D FROM DROSOPHILA JRNL TITL 3 MELANOGASTER. JRNL REF STRUCTURE V. 2 609 1994 JRNL REFN ISSN 0969-2126 JRNL PMID 7922039 JRNL DOI 10.1016/S0969-2126(00)00063-0
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1HMA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 6 90.35 -68.21 REMARK 500 1 ILE A 30 148.32 -36.38 REMARK 500 1 MET A 46 -113.51 -83.60 REMARK 500 1 LYS A 47 -78.54 -105.93 REMARK 500 1 ALA A 72 31.45 -87.85 REMARK 500 2 ASP A 3 -158.68 -164.40 REMARK 500 2 ARG A 7 152.74 -46.66 REMARK 500 2 SER A 10 153.55 -44.76 REMARK 500 2 ILE A 30 155.81 -40.11 REMARK 500 2 MET A 46 -113.10 -82.47 REMARK 500 2 LYS A 47 -82.40 -109.31 REMARK 500 3 ASP A 3 -147.51 -145.48 REMARK 500 3 ILE A 30 149.05 -36.30 REMARK 500 3 GLU A 41 -62.41 -92.91 REMARK 500 3 MET A 46 -114.35 -83.39 REMARK 500 3 LYS A 47 -90.73 -102.63 REMARK 500 3 ALA A 72 47.27 -83.91 REMARK 500 3 ASN A 73 -59.88 -148.25 REMARK 500 4 ILE A 30 149.80 -38.16 REMARK 500 4 MET A 46 -33.72 -32.02 REMARK 500 4 LYS A 47 -76.64 22.64 REMARK 500 5 ASP A 3 -94.26 55.86 REMARK 500 5 ARG A 7 117.33 -15.28 REMARK 500 5 LEU A 9 -177.52 178.81 REMARK 500 5 GLU A 21 -71.84 -79.14 REMARK 500 5 ARG A 25 -72.12 -82.32 REMARK 500 5 ILE A 30 152.64 -37.16 REMARK 500 5 MET A 46 -104.89 -69.60 REMARK 500 5 LYS A 47 -79.09 -123.85 REMARK 500 6 ASP A 3 -48.90 -179.00 REMARK 500 6 ARG A 25 -65.94 -95.16 REMARK 500 6 ILE A 30 153.48 -37.63 REMARK 500 6 MET A 46 -34.32 -31.39 REMARK 500 6 LYS A 47 -78.39 23.86 REMARK 500 6 GLU A 53 -43.63 -27.81 REMARK 500 7 ARG A 7 116.65 -23.07 REMARK 500 7 SER A 10 152.03 -42.76 REMARK 500 7 ILE A 30 153.15 -40.07 REMARK 500 7 MET A 46 -108.99 -62.76 REMARK 500 7 LYS A 47 -90.54 -123.15 REMARK 500 8 ASP A 3 -79.77 -119.26 REMARK 500 8 ILE A 30 148.25 -38.16 REMARK 500 8 MET A 46 -105.35 -68.67 REMARK 500 8 LYS A 47 -84.64 -123.67 REMARK 500 9 ILE A 30 161.01 -39.00 REMARK 500 9 MET A 46 -104.32 -63.10 REMARK 500 9 LYS A 47 -69.60 -128.51 REMARK 500 10 ASP A 3 -93.64 -92.89 REMARK 500 10 ARG A 7 124.65 -4.15 REMARK 500 10 ILE A 30 152.50 -40.39 REMARK 500 10 MET A 46 -107.99 -73.81 REMARK 500 10 LYS A 47 -65.07 -121.51 REMARK 500 10 ALA A 72 48.48 -88.91 REMARK 500 11 ASP A 3 -88.23 -94.37 REMARK 500 11 LEU A 9 179.94 179.72 REMARK 500 11 ARG A 25 -70.15 -79.99 REMARK 500 11 ILE A 30 148.58 -38.63 REMARK 500 11 MET A 46 -127.22 -82.31 REMARK 500 11 LYS A 47 -75.73 -108.00 REMARK 500 12 ASP A 3 -142.04 -81.72 REMARK 500 12 ARG A 7 114.68 -23.83 REMARK 500 12 ILE A 30 147.97 -38.87 REMARK 500 12 MET A 46 -126.38 -78.53 REMARK 500 12 LYS A 47 -71.08 -108.95 REMARK 500 12 ALA A 72 49.40 -84.97 REMARK 500 13 ARG A 7 122.31 -8.76 REMARK 500 13 ILE A 30 151.42 -38.05 REMARK 500 13 MET A 46 -33.72 -31.40 REMARK 500 13 LYS A 47 -75.48 21.05 REMARK 500 13 GLU A 53 -37.62 -35.59 REMARK 500 14 ASP A 3 155.49 77.27 REMARK 500 14 LYS A 6 87.54 -58.41 REMARK 500 14 ARG A 7 113.25 -34.40 REMARK 500 14 ARG A 25 -78.10 -88.18 REMARK 500 14 ILE A 30 151.78 -36.77 REMARK 500 14 MET A 46 -111.39 -79.81 REMARK 500 14 LYS A 47 -75.62 -106.77 REMARK 500 14 GLU A 51 -70.61 -64.61 REMARK 500 15 ASP A 3 -63.11 -99.90 REMARK 500 15 ARG A 7 118.78 -10.20 REMARK 500 15 LEU A 9 -177.91 177.29 REMARK 500 15 ILE A 30 145.32 -34.98 REMARK 500 15 MET A 46 -111.30 -76.24 REMARK 500 15 LYS A 47 -79.50 -103.87 REMARK 500 16 LYS A 6 85.26 -68.38 REMARK 500 16 ARG A 7 113.85 -25.61 REMARK 500 16 PRO A 28 -145.27 -73.68 REMARK 500 16 ILE A 30 151.21 -37.50 REMARK 500 16 MET A 46 -112.03 -80.28 REMARK 500 16 LYS A 47 -87.03 -109.33 REMARK 500 16 GLU A 51 -71.40 -68.51 REMARK 500 16 ASN A 73 47.98 -103.28 REMARK 500 17 ASP A 3 163.02 62.62 REMARK 500 17 ILE A 30 153.83 -37.94 REMARK 500 17 MET A 46 -34.10 -31.52 REMARK 500 17 LYS A 47 -80.55 22.64 REMARK 500 18 ASP A 3 -61.44 -128.97 REMARK 500 18 ARG A 25 -73.39 -81.50 REMARK 500 18 ILE A 30 149.66 -35.78 REMARK 500 18 MET A 46 -120.34 -96.02 REMARK 500 18 GLU A 53 -71.73 -59.30 REMARK 500 19 ARG A 7 120.28 -31.19 REMARK 500 19 ILE A 30 158.36 -37.93 REMARK 500 19 MET A 46 -114.52 -81.57 REMARK 500 19 LYS A 47 -84.60 -113.07 REMARK 500 20 ARG A 7 126.72 -5.11 REMARK 500 20 LEU A 9 166.51 -47.01 REMARK 500 20 ILE A 30 147.60 -38.08 REMARK 500 20 MET A 46 -107.35 -72.58 REMARK 500 20 LYS A 47 -80.54 -124.88 REMARK 500 20 GLU A 51 -71.34 -66.45 REMARK 500 20 TYR A 63 -75.99 -84.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 7 0.12 SIDE_CHAIN REMARK 500 1 ARG A 20 0.29 SIDE_CHAIN REMARK 500 1 ARG A 25 0.12 SIDE_CHAIN REMARK 500 1 ARG A 38 0.30 SIDE_CHAIN REMARK 500 1 ARG A 44 0.31 SIDE_CHAIN REMARK 500 1 ARG A 65 0.31 SIDE_CHAIN REMARK 500 2 ARG A 7 0.28 SIDE_CHAIN REMARK 500 2 ARG A 20 0.31 SIDE_CHAIN REMARK 500 2 ARG A 25 0.31 SIDE_CHAIN REMARK 500 2 ARG A 38 0.22 SIDE_CHAIN REMARK 500 2 ARG A 44 0.12 SIDE_CHAIN REMARK 500 2 ARG A 65 0.24 SIDE_CHAIN REMARK 500 3 ARG A 7 0.32 SIDE_CHAIN REMARK 500 3 ARG A 20 0.24 SIDE_CHAIN REMARK 500 3 ARG A 25 0.24 SIDE_CHAIN REMARK 500 3 ARG A 38 0.29 SIDE_CHAIN REMARK 500 3 ARG A 44 0.32 SIDE_CHAIN REMARK 500 3 ARG A 65 0.31 SIDE_CHAIN REMARK 500 4 ARG A 7 0.23 SIDE_CHAIN REMARK 500 4 ARG A 20 0.25 SIDE_CHAIN REMARK 500 4 ARG A 25 0.31 SIDE_CHAIN REMARK 500 4 ARG A 38 0.12 SIDE_CHAIN REMARK 500 4 ARG A 44 0.18 SIDE_CHAIN REMARK 500 4 ARG A 65 0.31 SIDE_CHAIN REMARK 500 5 ARG A 7 0.14 SIDE_CHAIN REMARK 500 5 ARG A 20 0.32 SIDE_CHAIN REMARK 500 5 ARG A 25 0.16 SIDE_CHAIN REMARK 500 5 ARG A 38 0.29 SIDE_CHAIN REMARK 500 5 ARG A 44 0.32 SIDE_CHAIN REMARK 500 5 ARG A 65 0.24 SIDE_CHAIN REMARK 500 6 ARG A 7 0.31 SIDE_CHAIN REMARK 500 6 ARG A 20 0.28 SIDE_CHAIN REMARK 500 6 ARG A 25 0.18 SIDE_CHAIN REMARK 500 6 ARG A 38 0.22 SIDE_CHAIN REMARK 500 6 ARG A 44 0.30 SIDE_CHAIN REMARK 500 6 ARG A 65 0.32 SIDE_CHAIN REMARK 500 7 ARG A 7 0.14 SIDE_CHAIN REMARK 500 7 ARG A 20 0.24 SIDE_CHAIN REMARK 500 7 ARG A 25 0.27 SIDE_CHAIN REMARK 500 7 ARG A 38 0.30 SIDE_CHAIN REMARK 500 7 ARG A 44 0.31 SIDE_CHAIN REMARK 500 7 ARG A 65 0.24 SIDE_CHAIN REMARK 500 8 ARG A 7 0.31 SIDE_CHAIN REMARK 500 8 ARG A 20 0.19 SIDE_CHAIN REMARK 500 8 ARG A 25 0.18 SIDE_CHAIN REMARK 500 8 ARG A 38 0.27 SIDE_CHAIN REMARK 500 8 ARG A 44 0.31 SIDE_CHAIN REMARK 500 8 ARG A 65 0.28 SIDE_CHAIN REMARK 500 9 ARG A 7 0.12 SIDE_CHAIN REMARK 500 9 ARG A 20 0.21 SIDE_CHAIN REMARK 500 9 ARG A 25 0.26 SIDE_CHAIN REMARK 500 9 ARG A 38 0.19 SIDE_CHAIN REMARK 500 9 ARG A 44 0.30 SIDE_CHAIN REMARK 500 10 ARG A 7 0.16 SIDE_CHAIN REMARK 500 10 ARG A 20 0.15 SIDE_CHAIN REMARK 500 10 ARG A 25 0.32 SIDE_CHAIN REMARK 500 10 ARG A 38 0.31 SIDE_CHAIN REMARK 500 10 ARG A 44 0.20 SIDE_CHAIN REMARK 500 10 ARG A 65 0.32 SIDE_CHAIN REMARK 500 11 ARG A 7 0.18 SIDE_CHAIN REMARK 500 11 ARG A 20 0.28 SIDE_CHAIN REMARK 500 11 ARG A 25 0.26 SIDE_CHAIN REMARK 500 11 ARG A 38 0.16 SIDE_CHAIN REMARK 500 11 ARG A 44 0.30 SIDE_CHAIN REMARK 500 11 ARG A 65 0.29 SIDE_CHAIN REMARK 500 12 ARG A 7 0.28 SIDE_CHAIN REMARK 500 12 ARG A 20 0.23 SIDE_CHAIN REMARK 500 12 ARG A 25 0.29 SIDE_CHAIN REMARK 500 12 ARG A 38 0.28 SIDE_CHAIN REMARK 500 12 ARG A 65 0.29 SIDE_CHAIN REMARK 500 13 ARG A 7 0.21 SIDE_CHAIN REMARK 500 13 ARG A 20 0.23 SIDE_CHAIN REMARK 500 13 ARG A 25 0.32 SIDE_CHAIN REMARK 500 13 ARG A 38 0.30 SIDE_CHAIN REMARK 500 13 ARG A 44 0.25 SIDE_CHAIN REMARK 500 13 ARG A 65 0.32 SIDE_CHAIN REMARK 500 14 ARG A 7 0.25 SIDE_CHAIN REMARK 500 14 ARG A 20 0.31 SIDE_CHAIN REMARK 500 14 ARG A 25 0.28 SIDE_CHAIN REMARK 500 14 ARG A 38 0.31 SIDE_CHAIN REMARK 500 14 ARG A 65 0.31 SIDE_CHAIN REMARK 500 15 ARG A 7 0.28 SIDE_CHAIN REMARK 500 15 ARG A 20 0.29 SIDE_CHAIN REMARK 500 15 ARG A 25 0.20 SIDE_CHAIN REMARK 500 15 ARG A 38 0.30 SIDE_CHAIN REMARK 500 15 ARG A 44 0.29 SIDE_CHAIN REMARK 500 15 ARG A 65 0.21 SIDE_CHAIN REMARK 500 16 ARG A 7 0.11 SIDE_CHAIN REMARK 500 16 ARG A 20 0.27 SIDE_CHAIN REMARK 500 16 ARG A 25 0.32 SIDE_CHAIN REMARK 500 16 ARG A 38 0.18 SIDE_CHAIN REMARK 500 16 ARG A 44 0.32 SIDE_CHAIN REMARK 500 17 ARG A 7 0.29 SIDE_CHAIN REMARK 500 17 ARG A 20 0.12 SIDE_CHAIN REMARK 500 17 ARG A 25 0.15 SIDE_CHAIN REMARK 500 17 ARG A 38 0.31 SIDE_CHAIN REMARK 500 17 ARG A 44 0.31 SIDE_CHAIN REMARK 500 17 ARG A 65 0.16 SIDE_CHAIN REMARK 500 18 ARG A 7 0.31 SIDE_CHAIN REMARK 500 18 ARG A 20 0.16 SIDE_CHAIN REMARK 500 18 ARG A 25 0.10 SIDE_CHAIN REMARK 500 18 ARG A 38 0.20 SIDE_CHAIN REMARK 500 18 ARG A 44 0.27 SIDE_CHAIN REMARK 500 18 ARG A 65 0.30 SIDE_CHAIN REMARK 500 19 ARG A 7 0.32 SIDE_CHAIN REMARK 500 19 ARG A 20 0.29 SIDE_CHAIN REMARK 500 19 ARG A 25 0.22 SIDE_CHAIN REMARK 500 19 ARG A 38 0.16 SIDE_CHAIN REMARK 500 19 ARG A 44 0.27 SIDE_CHAIN REMARK 500 19 ARG A 65 0.32 SIDE_CHAIN REMARK 500 20 ARG A 7 0.29 SIDE_CHAIN REMARK 500 20 ARG A 20 0.31 SIDE_CHAIN REMARK 500 20 ARG A 25 0.21 SIDE_CHAIN REMARK 500 20 ARG A 38 0.30 SIDE_CHAIN REMARK 500 20 ARG A 44 0.20 SIDE_CHAIN REMARK 500 20 ARG A 65 0.21 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1HMA A 2 74 UNP Q05783 HMGD_DROME 2 74
SEQRES 1 A 73 SER ASP LYS PRO LYS ARG PRO LEU SER ALA TYR MET LEU SEQRES 2 A 73 TRP LEU ASN SER ALA ARG GLU SER ILE LYS ARG GLU ASN SEQRES 3 A 73 PRO GLY ILE LYS VAL THR GLU VAL ALA LYS ARG GLY GLY SEQRES 4 A 73 GLU LEU TRP ARG ALA MET LYS ASP LYS SER GLU TRP GLU SEQRES 5 A 73 ALA LYS ALA ALA LYS ALA LYS ASP ASP TYR ASP ARG ALA SEQRES 6 A 73 VAL LYS GLU PHE GLU ALA ASN GLY
HELIX 1 I ALA A 11 ASN A 27 1~60 DEG BEND CENTRED @ ALA 19 17 HELIX 2 II THR A 33 MET A 46 1 14 HELIX 3 III LYS A 49 ASN A 73 1 25
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000