10 20 30 40 50 60 70 80 1HJ7 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CELL-SURFACE RECEPTOR 09-JAN-01 1HJ7
TITLE NMR STUDY OF A PAIR OF LDL RECEPTOR CA2+ BINDING TITLE 2 EPIDERMAL GROWTH FACTOR-LIKE DOMAINS, 20 STRUCTURES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: LDL RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CA2+ BINDING EPIDERMAL GROWTH FACTOR-LIKE DOMAIN COMPND 5 PAIR, RESIDUES 293-372; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELLULAR_LOCATION: TRANSMEMBRANE; SOURCE 6 GENE: LDLR; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE30 (QIAGEN)
KEYWDS CELL-SURFACE RECEPTOR, CALCIUM-BINDING, EGF-LIKE DOMAIN, KEYWDS 2 MODULE, APO-E, APO-B, LDL, VLDL
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR S.SAHA,P.A.HANDFORD,I.D.CAMPBELL,A.K.DOWNING
REVDAT 4 19-FEB-14 1HJ7 1 REMARK VERSN HETSYN REVDAT 3 24-FEB-09 1HJ7 1 VERSN REVDAT 2 16-AUG-01 1HJ7 1 DBREF SEQRES MASTER REVDAT 1 11-JUL-01 1HJ7 0
JRNL AUTH S.SAHA,J.BOYD,J.M.WERNER,V.KNOTT,P.A.HANDFORD, JRNL AUTH 2 I.D.CAMPBELL,A.K.DOWNING JRNL TITL SOLUTION STRUCTURE OF THE LDL RECEPTOR EGF-AB JRNL TITL 2 PAIR: A PARADIGM FOR THE ASSEMBLY OF TANDEM JRNL TITL 3 CALCIUM BINDING EGF DOMAINS JRNL REF STRUCTURE V. 9 451 2001 JRNL REFN ISSN 0969-2126 JRNL PMID 11435110 JRNL DOI 10.1016/S0969-2126(01)00606-2
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.BOYD,I.D.CAMPBELL,A.K.DOWNING REMARK 1 TITL THE USE OF DIPOLAR COUPLINGS FOR THE STRUCTURE REFINEMENT REMARK 1 TITL 2 OF A PAIR OF CALCIUM-BINDING EGF DOMAINS. REMARK 1 REF METHODS MOL.BIOL. V. 173 301 2002 REMARK 1 REFN ISSN 1064-3745 REMARK 1 PMID 11859771 REMARK 1 DOI 10.1385/1-59259-184-1:301 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.MALBY,R.PICKERING,S.SAHA,R.S.SMALLRIDGE,S.LINSE, REMARK 1 AUTH 2 A.K.DOWNING REMARK 1 TITL THE FIRST EPIDERMAL GROWTH FACTOR-LIKE DOMAIN OF REMARK 1 TITL 2 THE LOW-DENSITY LIPOPROTEIN RECEPTOR CONTAINS A REMARK 1 TITL 3 NONCANONICAL CALCIUM BINDING SITE REMARK 1 REF BIOCHEMISTRY V. 40 2555 2001 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 11327878 REMARK 1 DOI 10.1021/BI002322L
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER STRUCTURAL STATISTICS: FROM REMARK 3 EXPERIMENTAL DISTANCE CONSTRAINTS (A) RMS SIGMA REMARK 3 DEVIATIONS FROM EXP. RESTRAINTS DEVIATIONS FROM REMARK 3 IDEAL GEOMETRY REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN REMARK 3 REFERENCE 1.
REMARK 4 REMARK 4 1HJ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JAN-01. REMARK 100 THE PDBE ID CODE IS EBI-5541.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : SEE REFERENCES REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : SEE REFERENCES REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 1H-NOESY; COSY; TOCSY; REMARK 210 1H-15N HSQC; HMQC-J; REMARK 210 HSQC-NOESY; HSQC-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600; 750 REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : HOME-BUILT; OMEGA REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 280 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NO NOE, 3JHN OR 1JHN REMARK 210 CONSTRAINTS VIOLATED REMARK 210 BY > 0.5 A, 5 DEGREES REMARK 210 OR 2 HERTZ REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NOE DISTANCE CONSTRAINTS WERE DERIVED FROM CROSS REMARK 210 PEAK INTENSITIES MEASURED IN 1H-HOMONUCLEAR AND 1H-15N REMARK 210 HETERONUCLEAR NMR SPECTRA. COUPLING CONSTANTS USED TO REMARK 210 DERIVE TORSION ANGLE CONSTRAINTS WERE MEASURED IN A REMARK 210 1H-15N HMQC-J SPECTRUM. SEE REFERENCE 1 FOR DETAILS OF REMARK 210 1JHN CONSTRAINT IMPLEMENTATION.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 321 - H PHE A 323 1.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 294 62.59 -160.37 REMARK 500 1 ASN A 300 -0.10 60.41 REMARK 500 1 HIS A 306 -105.38 -110.74 REMARK 500 1 LYS A 312 -72.17 -40.81 REMARK 500 1 VAL A 326 -96.98 -97.57 REMARK 500 1 GLN A 328 19.26 40.50 REMARK 500 1 ARG A 329 -41.18 -141.92 REMARK 500 1 CYS A 331 109.80 -167.26 REMARK 500 1 ASP A 341 57.92 -150.44 REMARK 500 1 CYS A 343 -152.69 -151.24 REMARK 500 1 GLN A 345 -85.25 -132.29 REMARK 500 1 LEU A 350 -140.24 -98.17 REMARK 500 1 CYS A 358 -158.84 -142.16 REMARK 500 1 LYS A 369 14.80 45.88 REMARK 500 2 THR A 294 39.67 -166.38 REMARK 500 2 ASN A 300 8.12 52.68 REMARK 500 2 SER A 305 -19.78 -47.11 REMARK 500 2 HIS A 306 -117.99 -96.37 REMARK 500 2 ASP A 310 110.20 -38.17 REMARK 500 2 TYR A 315 -171.36 -51.20 REMARK 500 2 PRO A 320 -26.13 -29.29 REMARK 500 2 ALA A 327 -57.79 71.79 REMARK 500 2 GLN A 328 -2.56 132.07 REMARK 500 2 ARG A 329 29.57 -141.59 REMARK 500 2 ARG A 330 -144.55 -150.25 REMARK 500 2 CYS A 331 165.25 179.49 REMARK 500 2 ASP A 341 60.21 -150.61 REMARK 500 2 CYS A 343 -150.21 -151.05 REMARK 500 2 GLN A 345 -79.81 -140.62 REMARK 500 2 LEU A 350 -129.20 -99.30 REMARK 500 2 CYS A 358 -92.86 -149.19 REMARK 500 2 GLU A 359 -135.31 -85.39 REMARK 500 2 LYS A 369 3.85 56.25 REMARK 500 3 THR A 294 -134.48 -157.72 REMARK 500 3 ASN A 295 70.75 40.40 REMARK 500 3 ASN A 300 6.35 56.04 REMARK 500 3 HIS A 306 -112.90 -101.33 REMARK 500 3 LYS A 312 -86.69 -41.41 REMARK 500 3 PRO A 320 -16.22 -44.92 REMARK 500 3 ALA A 327 -49.49 -159.09 REMARK 500 3 GLN A 328 2.67 133.11 REMARK 500 3 ARG A 329 -33.62 -131.16 REMARK 500 3 ARG A 330 -144.08 -101.54 REMARK 500 3 CYS A 331 122.04 179.38 REMARK 500 3 ASP A 341 54.73 -150.09 REMARK 500 3 GLN A 345 -73.60 78.35 REMARK 500 3 LEU A 350 -125.51 -89.44 REMARK 500 3 CYS A 358 -154.93 -129.32 REMARK 500 3 LYS A 369 14.18 46.90 REMARK 500 4 THR A 294 90.20 -160.22 REMARK 500 4 ASN A 295 76.01 -157.30 REMARK 500 4 HIS A 306 -122.46 -89.87 REMARK 500 4 LYS A 312 -72.06 60.73 REMARK 500 4 GLU A 316 -149.07 -117.17 REMARK 500 4 PRO A 320 -145.69 -60.37 REMARK 500 4 ALA A 327 23.79 -171.35 REMARK 500 4 GLN A 328 7.06 49.98 REMARK 500 4 ARG A 330 73.21 -150.46 REMARK 500 4 GLN A 338 -12.83 -49.87 REMARK 500 4 GLN A 345 -61.82 -153.38 REMARK 500 4 LEU A 350 -162.50 -119.29 REMARK 500 4 CYS A 358 -26.75 -142.04 REMARK 500 4 GLU A 359 -139.84 -159.94 REMARK 500 4 LYS A 369 2.90 57.09 REMARK 500 5 THR A 294 -163.41 -78.81 REMARK 500 5 ASN A 295 82.94 -163.73 REMARK 500 5 ASN A 300 20.34 47.07 REMARK 500 5 CYS A 304 104.34 -53.23 REMARK 500 5 HIS A 306 -114.23 -91.93 REMARK 500 5 LYS A 312 -74.95 -41.85 REMARK 500 5 GLU A 316 -167.17 -108.50 REMARK 500 5 PRO A 320 87.68 -45.38 REMARK 500 5 GLN A 324 -160.02 -101.19 REMARK 500 5 ALA A 327 46.20 -145.44 REMARK 500 5 GLN A 328 22.53 36.70 REMARK 500 5 ARG A 329 -55.28 -151.19 REMARK 500 5 CYS A 331 177.46 -50.33 REMARK 500 5 GLN A 338 -8.07 -59.12 REMARK 500 5 GLN A 345 -82.89 90.06 REMARK 500 5 LEU A 350 -142.58 -104.34 REMARK 500 5 CYS A 358 -81.44 -111.20 REMARK 500 5 GLU A 359 -139.86 -94.27 REMARK 500 5 THR A 368 -94.55 -100.67 REMARK 500 5 LYS A 369 -17.82 177.12 REMARK 500 5 ALA A 370 -173.84 -61.98 REMARK 500 6 THR A 294 -175.14 52.20 REMARK 500 6 ASN A 295 70.01 -171.17 REMARK 500 6 ASN A 300 13.36 46.19 REMARK 500 6 HIS A 306 -114.72 -97.32 REMARK 500 6 TYR A 315 169.05 -30.02 REMARK 500 6 PRO A 320 85.27 -55.02 REMARK 500 6 VAL A 326 -28.44 -146.13 REMARK 500 6 ALA A 327 40.70 -148.31 REMARK 500 6 GLN A 328 23.14 37.48 REMARK 500 6 ARG A 329 -49.63 -151.58 REMARK 500 6 CYS A 331 -179.10 -51.10 REMARK 500 6 GLN A 338 -12.29 -49.38 REMARK 500 6 PRO A 340 22.98 -79.77 REMARK 500 6 ASP A 341 -6.27 -150.47 REMARK 500 6 GLN A 345 -73.05 67.57 REMARK 500 6 CYS A 358 -93.13 -150.30 REMARK 500 6 THR A 368 -97.47 -114.32 REMARK 500 6 LYS A 369 -16.85 -177.80 REMARK 500 7 ASN A 300 78.46 48.19 REMARK 500 7 HIS A 306 -115.32 -96.28 REMARK 500 7 ASN A 309 70.98 -119.16 REMARK 500 7 ASP A 310 96.61 -31.83 REMARK 500 7 LYS A 312 -87.39 48.44 REMARK 500 7 LEU A 318 -162.12 -72.02 REMARK 500 7 PRO A 320 -122.36 -49.47 REMARK 500 7 ALA A 327 -66.42 65.06 REMARK 500 7 GLN A 328 -3.35 143.47 REMARK 500 7 ARG A 330 -143.44 -91.21 REMARK 500 7 GLN A 345 -63.61 -153.47 REMARK 500 7 LEU A 350 -146.11 -114.58 REMARK 500 7 CYS A 358 -82.93 -138.83 REMARK 500 7 GLU A 359 -126.57 -87.40 REMARK 500 7 LYS A 369 10.64 50.50 REMARK 500 8 ASP A 299 -124.74 -94.98 REMARK 500 8 ASN A 300 28.33 -77.43 REMARK 500 8 CYS A 304 90.56 -66.59 REMARK 500 8 SER A 305 -19.30 -42.90 REMARK 500 8 HIS A 306 -110.29 -101.92 REMARK 500 8 LYS A 312 -79.95 -45.76 REMARK 500 8 GLU A 316 -166.89 -109.68 REMARK 500 8 PRO A 320 90.23 -59.28 REMARK 500 8 VAL A 326 -36.39 -147.93 REMARK 500 8 ALA A 327 42.02 -144.11 REMARK 500 8 GLN A 328 12.42 41.18 REMARK 500 8 ARG A 329 -41.04 -141.05 REMARK 500 8 ARG A 330 -148.65 -89.67 REMARK 500 8 CYS A 331 114.81 177.16 REMARK 500 8 GLN A 345 -78.66 79.03 REMARK 500 8 LEU A 350 -136.86 -98.82 REMARK 500 8 CYS A 358 -158.48 -144.25 REMARK 500 8 THR A 368 -89.41 -133.87 REMARK 500 8 LYS A 369 -29.75 -175.63 REMARK 500 8 ALA A 370 -163.47 -56.77 REMARK 500 9 ASN A 295 89.86 48.66 REMARK 500 9 GLU A 296 37.97 -86.16 REMARK 500 9 ASP A 299 -134.01 -110.56 REMARK 500 9 ASN A 300 29.48 -75.83 REMARK 500 9 CYS A 304 175.30 -48.88 REMARK 500 9 HIS A 306 -78.55 -146.40 REMARK 500 9 PRO A 320 0.60 -68.05 REMARK 500 9 ALA A 327 30.21 37.99 REMARK 500 9 GLN A 328 29.06 34.55 REMARK 500 9 ARG A 329 -41.74 -150.89 REMARK 500 9 ASP A 341 32.90 -99.60 REMARK 500 9 GLN A 345 -73.27 64.65 REMARK 500 9 LEU A 350 -134.81 -98.64 REMARK 500 9 CYS A 358 -142.35 -134.46 REMARK 500 9 GLU A 359 175.25 -46.63 REMARK 500 9 THR A 368 -95.74 -141.10 REMARK 500 9 LYS A 369 -12.91 -171.85 REMARK 500 9 ALA A 370 179.61 -53.37 REMARK 500 10 ASN A 295 91.12 -44.86 REMARK 500 10 GLU A 296 1.30 -59.76 REMARK 500 10 CYS A 297 -80.74 -76.51 REMARK 500 10 LEU A 298 -38.57 -21.18 REMARK 500 10 SER A 305 -16.62 -47.88 REMARK 500 10 HIS A 306 -111.98 -106.59 REMARK 500 10 LYS A 312 -101.17 -49.50 REMARK 500 10 LEU A 318 -157.27 -77.24 REMARK 500 10 VAL A 326 -103.84 -121.83 REMARK 500 10 GLN A 328 -19.02 133.60 REMARK 500 10 ARG A 330 -134.44 -150.29 REMARK 500 10 CYS A 331 166.24 175.78 REMARK 500 10 GLN A 338 -9.99 -52.33 REMARK 500 10 PRO A 340 21.41 -77.93 REMARK 500 10 GLN A 345 -60.02 76.27 REMARK 500 10 GLU A 359 -133.00 -165.34 REMARK 500 10 HIS A 367 8.21 -150.83 REMARK 500 10 LYS A 369 27.45 46.17 REMARK 500 10 ALA A 370 -163.40 -112.40 REMARK 500 11 ASN A 295 52.65 -168.30 REMARK 500 11 ASP A 299 -133.63 -104.11 REMARK 500 11 ASN A 300 28.50 -77.99 REMARK 500 11 HIS A 306 -87.39 -138.36 REMARK 500 11 LEU A 318 -161.44 -70.80 REMARK 500 11 VAL A 326 -64.79 -138.53 REMARK 500 11 GLN A 328 -10.49 146.72 REMARK 500 11 THR A 342 -66.63 -92.33 REMARK 500 11 GLN A 345 -135.29 -81.10 REMARK 500 11 LEU A 350 -126.67 -110.63 REMARK 500 11 CYS A 358 -94.37 -150.66 REMARK 500 11 LYS A 369 70.86 47.71 REMARK 500 11 ALA A 370 145.56 -172.40 REMARK 500 12 THR A 294 -71.29 -77.80 REMARK 500 12 ASN A 295 92.83 48.67 REMARK 500 12 ASN A 300 9.68 50.23 REMARK 500 12 HIS A 306 -119.64 -88.95 REMARK 500 12 ASP A 310 105.15 -40.94 REMARK 500 12 LYS A 312 -73.99 56.59 REMARK 500 12 PRO A 320 -16.36 -39.43 REMARK 500 12 ALA A 327 -58.09 -179.86 REMARK 500 12 GLN A 328 -21.09 157.47 REMARK 500 12 GLN A 338 -17.74 -45.36 REMARK 500 12 PRO A 340 26.17 -79.25 REMARK 500 12 ASP A 341 -8.89 -147.77 REMARK 500 12 GLN A 345 -71.53 -146.10 REMARK 500 12 LEU A 350 -154.69 -99.08 REMARK 500 12 GLU A 359 -134.71 40.55 REMARK 500 12 LYS A 369 5.93 52.44 REMARK 500 13 THR A 294 82.05 32.91 REMARK 500 13 ASP A 299 -137.63 -104.72 REMARK 500 13 ASN A 300 25.36 -77.53 REMARK 500 13 HIS A 306 -111.16 -101.64 REMARK 500 13 LEU A 311 62.18 -112.26 REMARK 500 13 LYS A 312 -74.98 57.55 REMARK 500 13 PRO A 320 -167.30 -46.64 REMARK 500 13 ALA A 327 -45.03 -134.56 REMARK 500 13 GLN A 328 23.59 127.84 REMARK 500 13 ARG A 329 -5.81 -151.33 REMARK 500 13 GLN A 345 -64.01 -149.38 REMARK 500 13 LEU A 350 -147.28 -94.59 REMARK 500 13 CYS A 358 -34.44 -145.69 REMARK 500 13 GLU A 359 -136.86 -148.60 REMARK 500 13 THR A 368 -81.80 -144.28 REMARK 500 13 LYS A 369 -15.42 150.62 REMARK 500 14 ASP A 299 -130.89 -100.88 REMARK 500 14 ASN A 300 40.09 -72.13 REMARK 500 14 HIS A 306 -116.89 -95.64 REMARK 500 14 PRO A 320 90.97 -50.08 REMARK 500 14 VAL A 326 -65.31 -142.77 REMARK 500 14 GLN A 328 -20.47 148.64 REMARK 500 14 ASP A 341 35.64 -98.27 REMARK 500 14 CYS A 343 -153.48 -145.71 REMARK 500 14 GLN A 345 -68.35 -150.34 REMARK 500 14 LEU A 350 -152.45 -99.82 REMARK 500 14 THR A 368 -86.23 -150.02 REMARK 500 14 LYS A 369 7.45 167.59 REMARK 500 15 ASP A 299 -65.69 -102.30 REMARK 500 15 ASN A 300 42.06 -142.89 REMARK 500 15 HIS A 306 -117.52 -89.94 REMARK 500 15 VAL A 326 -5.57 -146.68 REMARK 500 15 ALA A 327 37.05 -168.37 REMARK 500 15 GLN A 328 17.92 42.50 REMARK 500 15 ARG A 329 -45.27 -150.70 REMARK 500 15 ARG A 330 -156.52 -89.16 REMARK 500 15 CYS A 331 118.59 -175.85 REMARK 500 15 GLN A 338 -17.27 -44.39 REMARK 500 15 PRO A 340 26.15 -79.74 REMARK 500 15 ASP A 341 -2.88 -149.74 REMARK 500 15 GLN A 345 -60.56 -153.01 REMARK 500 15 CYS A 358 -79.68 -126.02 REMARK 500 15 GLU A 359 -158.25 -134.95 REMARK 500 15 ASP A 365 150.87 -48.86 REMARK 500 15 HIS A 367 -4.96 -147.57 REMARK 500 15 THR A 368 -81.91 -89.44 REMARK 500 15 LYS A 369 -29.59 167.53 REMARK 500 15 ALA A 370 -149.30 -70.68 REMARK 500 16 ASN A 295 66.82 -68.86 REMARK 500 16 GLU A 296 38.48 -68.89 REMARK 500 16 CYS A 297 -93.59 -133.40 REMARK 500 16 LEU A 298 -37.70 -22.54 REMARK 500 16 ASN A 300 -3.56 71.73 REMARK 500 16 HIS A 306 -112.13 -101.97 REMARK 500 16 LYS A 312 -87.72 -39.51 REMARK 500 16 PRO A 320 -147.09 -54.53 REMARK 500 16 ALA A 327 43.52 -155.78 REMARK 500 16 GLN A 328 23.39 41.65 REMARK 500 16 ARG A 329 -50.87 -150.08 REMARK 500 16 PRO A 340 24.28 -79.17 REMARK 500 16 ASP A 341 -1.48 -148.86 REMARK 500 16 GLN A 345 -62.23 -150.08 REMARK 500 16 LEU A 350 -146.08 -99.21 REMARK 500 16 LYS A 369 88.38 48.90 REMARK 500 17 ASP A 299 -111.26 -124.86 REMARK 500 17 ASN A 300 -121.12 -68.33 REMARK 500 17 HIS A 306 -118.33 -90.69 REMARK 500 17 PRO A 320 -119.08 -25.92 REMARK 500 17 GLN A 328 -1.13 147.96 REMARK 500 17 ARG A 329 -34.10 -135.87 REMARK 500 17 ARG A 330 -137.12 -89.49 REMARK 500 17 CYS A 331 137.76 170.09 REMARK 500 17 GLN A 345 -91.01 -126.16 REMARK 500 17 LEU A 350 -156.95 -108.92 REMARK 500 17 CYS A 358 -35.94 -145.13 REMARK 500 17 LYS A 369 8.95 50.76 REMARK 500 18 ASN A 295 77.59 -172.28 REMARK 500 18 ASN A 300 11.41 49.38 REMARK 500 18 HIS A 306 -102.48 -111.83 REMARK 500 18 LYS A 312 -70.47 -39.07 REMARK 500 18 VAL A 326 -32.16 -150.31 REMARK 500 18 ALA A 327 38.85 -141.23 REMARK 500 18 GLN A 328 19.30 42.60 REMARK 500 18 ARG A 329 -48.10 -151.15 REMARK 500 18 ASP A 341 57.60 -150.33 REMARK 500 18 SER A 344 97.50 -53.10 REMARK 500 18 GLN A 345 -141.62 128.02 REMARK 500 18 LEU A 350 -129.43 -105.90 REMARK 500 18 CYS A 358 -158.78 -131.85 REMARK 500 18 LYS A 369 3.86 56.56 REMARK 500 19 ASP A 299 -117.68 -78.35 REMARK 500 19 ASN A 300 26.72 -69.04 REMARK 500 19 HIS A 306 -112.43 -100.02 REMARK 500 19 LYS A 312 -84.50 -43.53 REMARK 500 19 PRO A 320 101.34 -52.39 REMARK 500 19 VAL A 326 -40.91 -146.23 REMARK 500 19 GLN A 328 20.56 41.11 REMARK 500 19 ARG A 329 -56.77 -147.62 REMARK 500 19 ASP A 341 34.33 -95.39 REMARK 500 19 GLN A 345 -68.96 -150.36 REMARK 500 19 LEU A 350 -133.79 -96.09 REMARK 500 19 CYS A 358 -148.72 -143.88 REMARK 500 19 ALA A 370 149.20 -178.71 REMARK 500 20 ASN A 295 88.14 -167.22 REMARK 500 20 ASP A 299 -113.47 -120.11 REMARK 500 20 HIS A 306 -114.60 -94.50 REMARK 500 20 LYS A 312 -90.36 -47.62 REMARK 500 20 VAL A 326 -85.34 -101.83 REMARK 500 20 GLN A 328 7.48 47.66 REMARK 500 20 ARG A 329 -27.68 -147.43 REMARK 500 20 ARG A 330 -142.72 -88.86 REMARK 500 20 CYS A 331 112.21 175.59 REMARK 500 20 GLN A 338 -7.93 -57.11 REMARK 500 20 SER A 344 -72.85 -46.02 REMARK 500 20 GLN A 345 -108.99 -61.01 REMARK 500 20 LEU A 350 -127.48 -97.45 REMARK 500 20 THR A 368 -88.61 -97.41 REMARK 500 20 LYS A 369 -12.34 -176.64 REMARK 500 20 ALA A 370 -163.19 -57.18 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 391 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 311 O REMARK 620 2 GLU A 296 OE1 149.1 REMARK 620 3 ASP A 310 OD1 72.8 98.9 REMARK 620 4 ASP A 310 OD2 120.7 53.9 48.6 REMARK 620 5 THR A 294 O 156.9 46.5 89.5 46.6 REMARK 620 6 THR A 294 OG1 136.1 73.2 125.8 92.0 45.8 REMARK 620 7 GLU A 296 OE2 133.0 48.9 147.8 101.0 69.3 53.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 392 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 336 OE2 REMARK 620 2 ASP A 333 OD1 99.7 REMARK 620 3 ILE A 334 O 58.3 79.7 REMARK 620 4 GLU A 336 OE1 48.7 145.3 71.2 REMARK 620 5 ASN A 349 OD1 101.2 139.1 82.0 55.4 REMARK 620 6 ASP A 333 OD2 142.3 45.9 95.0 152.7 100.4 REMARK 620 7 LEU A 350 O 148.2 83.2 151.4 130.9 96.6 57.0 REMARK 620 N 1 2 3 4 5 6
REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED.
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 391 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 392
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AJJ RELATED DB: PDB REMARK 900 LDL RECEPTOR LIGAND-BINDING MODULE 5, REMARK 900 CALCIUM-COORDINATING REMARK 900 RELATED ID: 1D2J RELATED DB: PDB REMARK 900 LDL RECEPTOR LIGAND-BINDING MODULE 6 REMARK 900 RELATED ID: 1F5Y RELATED DB: PDB REMARK 900 NMR STRUCTURE OF A CONCATEMER OF THE FIRST AND SECOND REMARK 900 LIGAND-BINDING MODULES OF THE HUMAN LDL RECEPTOR REMARK 900 RELATED ID: 1F8Z RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE SIXTH LIGAND-BINDING MODULE OF THE REMARK 900 LDLRECEPTOR REMARK 900 RELATED ID: 1LDL RELATED DB: PDB REMARK 900 LOW-DENSITY LIPOPROTEIN RECEPTOR, FIRST REPEAT REMARK 900 RELATED ID: 1LDR RELATED DB: PDB REMARK 900 SECOND REPEAT OF THE LDL RECEPTOR LIGAND-BINDING DOMAIN REMARK 900 RELATED ID: 1LRX RELATED DB: PDB REMARK 900 THEORETIC MODEL OF THE HUMAN LOW-DENSITY REMARK 900 LIPOPROTEINRECEPTOR YWTD BETA-PROPELLER DOMAIN REMARK 900 RELATED ID: 1EMO RELATED DB: PDB REMARK 900 NMR STUDY OF A PAIR OF FIBRILLIN CA2+ BINDING REMARK 900 EPIDERMAL GROWTH FACTOR-LIKE DOMAINS, 22 STRUCTURES
DBREF 1HJ7 A 293 372 UNP P01130 LDLR_HUMAN 314 393
SEQRES 1 A 80 GLY THR ASN GLU CYS LEU ASP ASN ASN GLY GLY CYS SER SEQRES 2 A 80 HIS VAL CYS ASN ASP LEU LYS ILE GLY TYR GLU CYS LEU SEQRES 3 A 80 CYS PRO ASP GLY PHE GLN LEU VAL ALA GLN ARG ARG CYS SEQRES 4 A 80 GLU ASP ILE ASP GLU CYS GLN ASP PRO ASP THR CYS SER SEQRES 5 A 80 GLN LEU CYS VAL ASN LEU GLU GLY GLY TYR LYS CYS GLN SEQRES 6 A 80 CYS GLU GLU GLY PHE GLN LEU ASP PRO HIS THR LYS ALA SEQRES 7 A 80 CYS LYS
HET CA A 391 1 HET CA A 392 1
HETNAM CA CALCIUM ION
FORMUL 2 CA 2(CA 2+)
HELIX 1 1 ASP A 299 CYS A 304 5 6 HELIX 2 2 ASP A 335 ASP A 339 5 5
SHEET 1 S1 2 VAL A 307 ASN A 309 0 SHEET 2 S1 2 GLU A 316 LEU A 318 -1 N VAL A 307 O LEU A 318 SHEET 1 S2 2 PHE A 323 LEU A 325 0 SHEET 2 S2 2 CYS A 331 ASP A 333 -1 N GLN A 324 O GLU A 332 SHEET 1 S3 2 LEU A 346 VAL A 348 0 SHEET 2 S3 2 LYS A 355 GLN A 357 -1 N LEU A 346 O GLN A 357
SSBOND 1 CYS A 297 CYS A 308 1555 1555 2.02 SSBOND 2 CYS A 304 CYS A 317 1555 1555 2.02 SSBOND 3 CYS A 319 CYS A 331 1555 1555 2.03 SSBOND 4 CYS A 337 CYS A 347 1555 1555 2.02 SSBOND 5 CYS A 343 CYS A 356 1555 1555 2.02 SSBOND 6 CYS A 358 CYS A 371 1555 1555 2.02
LINK CA CA A 391 O LEU A 311 1555 1555 2.66 LINK CA CA A 391 OE1 GLU A 296 1555 1555 2.58 LINK CA CA A 391 OD1 ASP A 310 1555 1555 2.61 LINK CA CA A 391 OD2 ASP A 310 1555 1555 2.62 LINK CA CA A 391 O THR A 294 1555 1555 3.27 LINK CA CA A 391 OG1 THR A 294 1555 1555 2.61 LINK CA CA A 391 OE2 GLU A 296 1555 1555 2.62 LINK CA CA A 392 OD1 ASP A 333 1555 1555 2.58 LINK CA CA A 392 O ILE A 334 1555 1555 2.62 LINK CA CA A 392 OE1 GLU A 336 1555 1555 2.63 LINK CA CA A 392 OD1 ASN A 349 1555 1555 2.55 LINK CA CA A 392 OD2 ASP A 333 1555 1555 2.90 LINK CA CA A 392 O LEU A 350 1555 1555 2.64 LINK CA CA A 392 OE2 GLU A 336 1555 1555 2.59
SITE 1 AC1 4 THR A 294 GLU A 296 ASP A 310 LEU A 311 SITE 1 AC2 5 ASP A 333 ILE A 334 GLU A 336 ASN A 349 SITE 2 AC2 5 LEU A 350
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000