10 20 30 40 50 60 70 80 1HFS - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 13-FEB-97 1HFS
TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN FIBROBLAST TITLE 2 STROMELYSIN-1 INHIBITED WITH THE N-CARBOXY-ALKYL INHIBITOR L-764,004
COMPND MOL_ID: 1; COMPND 2 MOLECULE: STROMELYSIN-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MATRIX METALLOPROTEASE-3, PROTEOGLYCANASE; COMPND 5 EC: 3.4.24.17; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS HYDROLASE, METALLOPROTEASE, MATRIX METALLOPROTEASE-3, PROTEOGLYCANASE
EXPDTA X-RAY DIFFRACTION
AUTHOR J.W.BECKER
REVDAT 4 22-FEB-12 1HFS 1 JRNL VERSN REVDAT 3 24-FEB-09 1HFS 1 VERSN REVDAT 2 01-APR-03 1HFS 1 JRNL REVDAT 1 18-FEB-98 1HFS 0
JRNL AUTH C.K.ESSER,R.L.BUGIANESI,C.G.CALDWELL,K.T.CHAPMAN, JRNL AUTH 2 P.L.DURETTE,N.N.GIROTRA,I.E.KOPKA,T.J.LANZA,D.A.LEVORSE, JRNL AUTH 3 M.MACCOSS,K.A.OWENS,M.M.PONPIPOM,J.P.SIMEONE,R.K.HARRISON, JRNL AUTH 4 L.NIEDZWIECKI,J.W.BECKER,A.I.MARCY,M.G.AXEL,A.J.CHRISTEN, JRNL AUTH 5 J.MCDONNELL,V.L.MOORE,J.M.OLSZEWSKI,C.SAPHOS,D.M.VISCO, JRNL AUTH 6 F.SHEN,A.COLLETTI,P.A.KRIETER,W.K.HAGMANN JRNL TITL INHIBITION OF STROMELYSIN-1 (MMP-3) BY P1'-BIPHENYLYLETHYL JRNL TITL 2 CARBOXYALKYL DIPEPTIDES. JRNL REF J.MED.CHEM. V. 40 1026 1997 JRNL REFN ISSN 0022-2623 JRNL PMID 9083493 JRNL DOI 10.1021/JM960465T
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.R.GOOLEY,J.F.O'CONNELL,A.I.MARCY,G.C.CUCA,M.G.AXEL, REMARK 1 AUTH 2 C.G.CALDWELL,W.K.HAGMANN,J.W.BECKER REMARK 1 TITL COMPARISON OF THE STRUCTURE OF HUMAN RECOMBINANT SHORT FORM REMARK 1 TITL 2 STROMELYSIN BY MULTIDIMENSIONAL HETERONUCLEAR NMR AND X-RAY REMARK 1 TITL 3 CRYSTALLOGRAPHY REMARK 1 REF J.BIOMOL.NMR V. 7 8 1996 REMARK 1 REFN ISSN 0925-2738 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.W.BECKER,A.I.MARCY,L.L.ROKOSZ,M.G.AXEL,J.J.BURBAUM, REMARK 1 AUTH 2 P.M.FITZGERALD,P.M.CAMERON,C.K.ESSER,W.K.HAGMANN,J.D.HERMES, REMARK 1 AUTH 3 J.P.SPRINGER REMARK 1 TITL STROMELYSIN-1: THREE-DIMENSIONAL STRUCTURE OF THE INHIBITED REMARK 1 TITL 2 CATALYTIC DOMAIN AND OF THE C-TRUNCATED PROENZYME REMARK 1 REF PROTEIN SCI. V. 4 1966 1995 REMARK 1 REFN ISSN 0961-8368 REMARK 1 REFERENCE 3 REMARK 1 AUTH P.R.GOOLEY,J.F.O'CONNELL,A.I.MARCY,G.C.CUCA,S.P.SALOWE, REMARK 1 AUTH 2 B.L.BUSH,J.D.HERMES,C.K.ESSER,W.K.HAGMANN,J.P.SPRINGER, REMARK 1 AUTH 3 B.A.JOHNSON REMARK 1 TITL THE NMR STRUCTURE OF THE INHIBITED CATALYTIC DOMAIN OF HUMAN REMARK 1 TITL 2 STROMELYSIN-1 REMARK 1 REF NAT.STRUCT.BIOL. V. 1 111 1994 REMARK 1 REFN ISSN 1072-8368 REMARK 1 REFERENCE 4 REMARK 1 AUTH K.T.CHAPMAN,I.E.KOPKA,P.L.DURETTE,C.K.ESSER,T.J.LANZA, REMARK 1 AUTH 2 M.IZQUIERDO-MARTIN,L.NIEDZWIECKI,B.CHANG,R.K.HARRISON, REMARK 1 AUTH 3 D.W.KUO,T.Y.LIN,R.L.STEIN,W.K.HAGMANN REMARK 1 TITL INHIBITION OF MATRIX METALLOPROTEINASES BY N-CARBOXYALKYL REMARK 1 TITL 2 PEPTIDES REMARK 1 REF J.MED.CHEM. V. 36 4293 1993 REMARK 1 REFN ISSN 0022-2623 REMARK 1 REFERENCE 5 REMARK 1 AUTH A.I.MARCY,L.L.EIBERGER,R.HARRISON,H.K.CHAN,N.I.HUTCHINSON, REMARK 1 AUTH 2 W.K.HAGMANN,P.M.CAMERON,D.A.BOULTON,J.D.HERMES REMARK 1 TITL HUMAN FIBROBLAST STROMELYSIN CATALYTIC DOMAIN: EXPRESSION, REMARK 1 TITL 2 PURIFICATION, AND CHARACTERIZATION OF A C-TERMINALLY REMARK 1 TITL 3 TRUNCATED FORM REMARK 1 REF BIOCHEMISTRY V. 30 6476 1991 REMARK 1 REFN ISSN 0006-2960
REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 20353 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 985 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.73 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 800 REMARK 3 BIN R VALUE (WORKING SET) : 0.3390 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 35 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.049 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1271 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 143 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.10 REMARK 3 LOW RESOLUTION CUTOFF (A) : 20.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.08 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.19 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.300 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.200 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.340 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.640 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : SLN004.PAR REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : SLN004.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED
REMARK 4 REMARK 4 1HFS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-AUG-94 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21587 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.170 REMARK 200 R MERGE (I) : 0.03380 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.63000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 27.63000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.07000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.67500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.07000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.67500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.63000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.07000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.67500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 27.63000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.07000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.67500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 85.35000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 55.26000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 433 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 468 LIES ON A SPECIAL POSITION.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 89 87.98 39.24 REMARK 500 ARG A 149 -132.51 49.96 REMARK 500 ASN A 162 -123.82 54.21 REMARK 500 ASP A 189 -165.24 -115.67 REMARK 500 TYR A 246 -81.16 -110.18 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 257 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 L04 A 256 O5 REMARK 620 2 HIS A 201 NE2 111.4 REMARK 620 3 HIS A 205 NE2 128.8 103.4 REMARK 620 4 HIS A 211 NE2 103.5 108.2 99.6 REMARK 620 5 L04 A 256 O4 54.4 93.3 88.2 154.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 258 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 151 NE2 REMARK 620 2 ASP A 153 OD2 104.9 REMARK 620 3 HIS A 166 NE2 119.0 114.2 REMARK 620 4 HIS A 179 ND1 108.5 97.9 110.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 259 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 159 O REMARK 620 2 GLY A 161 O 92.3 REMARK 620 3 VAL A 163 O 177.7 88.1 REMARK 620 4 GLU A 184 OE2 90.4 87.4 91.9 REMARK 620 5 ASP A 158 OD1 90.5 89.0 87.2 176.3 REMARK 620 6 ASP A 181 OD2 87.0 179.4 92.5 92.7 91.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 260 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 141 O REMARK 620 2 GLY A 173 O 168.6 REMARK 620 3 ASN A 175 O 103.9 87.5 REMARK 620 4 ASP A 177 OD1 84.1 95.9 95.8 REMARK 620 5 HOH A 306 O 86.0 94.7 82.4 169.2 REMARK 620 6 HOH A 312 O 87.2 81.4 167.6 91.0 92.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 261 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 107 OD2 REMARK 620 2 ASP A 182 O 147.7 REMARK 620 3 ASP A 182 OD1 87.2 74.8 REMARK 620 4 GLU A 184 O 75.8 83.2 105.2 REMARK 620 5 HOH A 313 O 95.6 104.4 175.1 79.4 REMARK 620 6 HOH A 332 O 127.0 80.1 89.0 154.4 86.2 REMARK 620 7 ASP A 107 OD1 49.7 155.1 93.2 121.5 85.6 77.9 REMARK 620 N 1 2 3 4 5 6
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: L04 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR THE INHIBITOR L-764,004, REMARK 800 DENOTED L04 256. REMARK 800 REMARK 800 SITE_IDENTIFIER: ZN1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: LIGANDS OF THE CATALYTIC (ZN 257) ZINC ION. REMARK 800 REMARK 800 SITE_IDENTIFIER: ZN2 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: LIGANDS OF THE STRUCTURAL (ZN 258) ZINC ION. REMARK 800 REMARK 800 SITE_IDENTIFIER: CA1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: LIGANDS OF THE CALCIUM ION CA 259. REMARK 800 REMARK 800 SITE_IDENTIFIER: CA2 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: LIGANDS OF THE CALCIUM ION CA 260. REMARK 800 REMARK 800 SITE_IDENTIFIER: CA3 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: LIGANDS OF THE CALCIUM ION CA 261. REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 257 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 258 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 259 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE L04 A 256
DBREF 1HFS A 88 247 UNP P08254 MMP3_HUMAN 105 264
SEQRES 1 A 160 GLY ILE PRO LYS TRP ARG LYS THR HIS LEU THR TYR ARG SEQRES 2 A 160 ILE VAL ASN TYR THR PRO ASP LEU PRO LYS ASP ALA VAL SEQRES 3 A 160 ASP SER ALA VAL GLU LYS ALA LEU LYS VAL TRP GLU GLU SEQRES 4 A 160 VAL THR PRO LEU THR PHE SER ARG LEU TYR GLU GLY GLU SEQRES 5 A 160 ALA ASP ILE MET ILE SER PHE ALA VAL ARG GLU HIS GLY SEQRES 6 A 160 ASP PHE TYR PRO PHE ASP GLY PRO GLY ASN VAL LEU ALA SEQRES 7 A 160 HIS ALA TYR ALA PRO GLY PRO GLY ILE ASN GLY ASP ALA SEQRES 8 A 160 HIS PHE ASP ASP ASP GLU GLN TRP THR LYS ASP THR THR SEQRES 9 A 160 GLY THR ASN LEU PHE LEU VAL ALA ALA HIS GLU ILE GLY SEQRES 10 A 160 HIS SER LEU GLY LEU PHE HIS SER ALA ASN THR GLU ALA SEQRES 11 A 160 LEU MET TYR PRO LEU TYR HIS SER LEU THR ASP LEU THR SEQRES 12 A 160 ARG PHE ARG LEU SER GLN ASP ASP ILE ASN GLY ILE GLN SEQRES 13 A 160 SER LEU TYR GLY
HET ZN A 257 1 HET ZN A 258 1 HET CA A 259 1 HET CA A 260 1 HET CA A 261 1 HET L04 A 256 52
HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM L04 6-(4'-FLUORO-BIPHENYL-4-YL)-4-(3-METHYL-1- HETNAM 2 L04 PHENYLCARBAMOYL-BUTYLCARBAMOYL)-2-[4-(1-OXO-1,3- HETNAM 3 L04 DIHYDRO-ISOINDOL-2-YL)-BUTYL]-HEXANOIC ACID
HETSYN L04 L004
FORMUL 2 ZN 2(ZN 2+) FORMUL 4 CA 3(CA 2+) FORMUL 7 L04 C43 H48 F N3 O5 FORMUL 8 HOH *143(H2 O)
HELIX 1 A LYS A 110 GLU A 126 1 17 HELIX 2 B LEU A 195 LEU A 207 1 13 HELIX 3 C GLN A 236 TYR A 246 1 11
SHEET 1 1 5 THR A 131 ARG A 134 0 SHEET 2 1 5 HIS A 96 ILE A 101 1 O LEU A 97 N THR A 131 SHEET 3 1 5 ILE A 142 ALA A 147 1 O ILE A 142 N ARG A 100 SHEET 4 1 5 ASP A 177 ASP A 181 1 O ALA A 178 N SER A 145 SHEET 5 1 5 ALA A 165 TYR A 168 -1 O HIS A 166 N HIS A 179
LINK O5 L04 A 256 ZN ZN A 257 1555 1555 1.84 LINK ZN ZN A 257 NE2 HIS A 201 1555 1555 1.90 LINK ZN ZN A 257 NE2 HIS A 205 1555 1555 1.93 LINK ZN ZN A 257 NE2 HIS A 211 1555 1555 1.85 LINK ZN ZN A 258 NE2 HIS A 151 1555 1555 1.83 LINK ZN ZN A 258 OD2 ASP A 153 1555 1555 2.00 LINK ZN ZN A 258 NE2 HIS A 166 1555 1555 1.78 LINK ZN ZN A 258 ND1 HIS A 179 1555 1555 2.01 LINK CA CA A 259 O GLY A 159 1555 1555 2.29 LINK CA CA A 259 O GLY A 161 1555 1555 2.34 LINK CA CA A 259 O VAL A 163 1555 1555 2.34 LINK CA CA A 259 OE2 GLU A 184 1555 1555 2.37 LINK CA CA A 259 OD1 ASP A 158 1555 1555 2.49 LINK CA CA A 259 OD2 ASP A 181 1555 1555 2.45 LINK CA CA A 260 O ASP A 141 1555 1555 2.38 LINK CA CA A 260 O GLY A 173 1555 1555 2.36 LINK CA CA A 260 O ASN A 175 1555 1555 2.38 LINK CA CA A 260 OD1 ASP A 177 1555 1555 2.57 LINK CA CA A 260 O HOH A 306 1555 1555 2.29 LINK CA CA A 260 O HOH A 312 1555 1555 2.28 LINK CA CA A 261 OD2 ASP A 107 1555 1555 2.48 LINK CA CA A 261 O ASP A 182 1555 1555 2.29 LINK CA CA A 261 OD1 ASP A 182 1555 1555 2.60 LINK CA CA A 261 O GLU A 184 1555 1555 2.45 LINK CA CA A 261 O HOH A 313 1555 1555 2.33 LINK CA CA A 261 O HOH A 332 1555 1555 2.32 LINK ZN ZN A 257 O4 L04 A 256 1555 1555 2.62 LINK CA CA A 261 OD1 ASP A 107 1555 1555 2.69
SITE 1 L04 22 TYR A 155 ASN A 162 VAL A 163 LEU A 164 SITE 2 L04 22 ALA A 165 HIS A 166 TYR A 168 LEU A 197 SITE 3 L04 22 VAL A 198 HIS A 201 GLU A 202 HIS A 205 SITE 4 L04 22 HIS A 211 ALA A 217 LEU A 218 TYR A 220 SITE 5 L04 22 PRO A 221 LEU A 222 TYR A 223 HIS A 224 SITE 6 L04 22 LEU A 226 ZN A 257 SITE 1 ZN1 4 HIS A 201 HIS A 205 HIS A 211 L04 A 256 SITE 1 ZN2 4 HIS A 151 ASP A 153 HIS A 166 HIS A 179 SITE 1 CA1 6 ASP A 158 GLY A 159 GLY A 161 VAL A 163 SITE 2 CA1 6 ASP A 181 GLU A 184 SITE 1 CA2 6 ASP A 141 GLY A 173 ASN A 175 ASP A 177 SITE 2 CA2 6 HOH A 306 HOH A 312 SITE 1 CA3 5 ASP A 107 ASP A 182 GLU A 184 HOH A 313 SITE 2 CA3 5 HOH A 332 SITE 1 AC1 4 HIS A 201 HIS A 205 HIS A 211 L04 A 256 SITE 1 AC2 4 HIS A 151 ASP A 153 HIS A 166 HIS A 179 SITE 1 AC3 6 ASP A 158 GLY A 159 GLY A 161 VAL A 163 SITE 2 AC3 6 ASP A 181 GLU A 184 SITE 1 AC4 6 ASP A 141 GLY A 173 ASN A 175 ASP A 177 SITE 2 AC4 6 HOH A 306 HOH A 312 SITE 1 AC5 5 ASP A 107 ASP A 182 GLU A 184 HOH A 313 SITE 2 AC5 5 HOH A 332 SITE 1 AC6 24 TYR A 155 ASN A 162 VAL A 163 LEU A 164 SITE 2 AC6 24 ALA A 165 HIS A 166 ALA A 167 TYR A 168 SITE 3 AC6 24 HIS A 201 GLU A 202 HIS A 205 HIS A 211 SITE 4 AC6 24 LEU A 218 TYR A 220 PRO A 221 LEU A 222 SITE 5 AC6 24 TYR A 223 HIS A 224 LEU A 226 ZN A 257 SITE 6 AC6 24 HOH A 301 HOH A 307 HOH A 323 HOH A 329
CRYST1 84.140 85.350 55.260 90.00 90.00 90.00 C 2 2 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011885 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011716 0.000000 0.00000
SCALE3 0.000000 0.000000 0.018096 0.00000