10 20 30 40 50 60 70 80 1HD1 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN 18-MAY-99 1HD1
TITLE HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D0 (HNRNP D0 RBD1), TITLE 2 NMR
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN COMPND 3 D0); COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RNA-BINDING DOMAIN; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL: HELA; SOURCE 6 CELLULAR_LOCATION: NUCLEUS; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_CELL: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET3A; SOURCE 12 EXPRESSION_SYSTEM_GENE: PET3A; SOURCE 13 OTHER_DETAILS: PCR
KEYWDS RNA-BINDING DOMAIN, RNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.NAGATA,Y.KURIHARA,G.MATSUDA,J.SAEKI,T.KOHNO,Y.YANAGIDA, AUTHOR 2 F.ISHIKAWA,S.UESUGI,M.KATAHIRA
REVDAT 2 24-FEB-09 1HD1 1 VERSN REVDAT 1 18-MAY-00 1HD1 0
JRNL AUTH T.NAGATA,Y.KURIHARA,G.MATSUDA,J.SAEKI,T.KOHNO, JRNL AUTH 2 Y.YANAGIDA,F.ISHIKAWA,S.UESUGI,M.KATAHIRA JRNL TITL STRUCTURE AND INTERACTIONS WITH RNA OF THE JRNL TITL 2 N-TERMINAL UUAG-SPECIFIC RNA-BINDING DOMAIN OF JRNL TITL 3 HNRNP D0. JRNL REF J.MOL.BIOL. V. 287 221 1999 JRNL REFN ISSN 0022-2836 JRNL PMID 10080887 JRNL DOI 10.1006/JMBI.1999.2616
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1, X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER (X-PLOR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1HD1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAY-99. REMARK 100 THE RCSB ID CODE IS RCSB001081.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0 MM REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY, TOCSY, DQF-COSY, 1H- REMARK 210 15N 2D HSQC, 15N-EDITED NOESY- REMARK 210 HSQC, 13C-EDITED NOESY-HSQC, REMARK 210 15N-EDITED TOCSY-HSQC, HNCA, REMARK 210 HNCO, HN(CO)CA, HNCACB, REMARK 210 CBCA(CO)NH, HNHA, HCCH-COSY, REMARK 210 HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX500, DRX600 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.1, X-PLOR 3.8 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWER ENERGIES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 126 105.56 -170.47 REMARK 500 1 LEU A 130 21.08 -149.36 REMARK 500 1 ASP A 131 109.26 -45.85 REMARK 500 1 LYS A 161 74.96 179.86 REMARK 500 1 ASN A 163 15.19 58.38 REMARK 500 1 VAL A 166 -174.30 -69.36 REMARK 500 1 ARG A 171 45.27 -91.83 REMARK 500 2 LEU A 130 27.69 -149.82 REMARK 500 2 ASP A 131 107.66 -40.90 REMARK 500 2 LYS A 161 67.99 179.20 REMARK 500 3 TRP A 106 -19.87 -49.75 REMARK 500 3 CYS A 126 149.94 -170.11 REMARK 500 3 LYS A 129 71.33 -111.77 REMARK 500 3 LEU A 130 14.65 -151.62 REMARK 500 3 ARG A 136 25.37 -140.52 REMARK 500 3 LYS A 161 85.45 -150.80 REMARK 500 3 ASN A 163 19.44 59.37 REMARK 500 4 LEU A 130 21.94 -149.55 REMARK 500 4 ARG A 171 50.78 -91.61 REMARK 500 5 CYS A 126 140.37 -170.34 REMARK 500 5 ARG A 136 -164.76 -127.29 REMARK 500 5 PHE A 140 138.67 -170.30 REMARK 500 5 LYS A 161 88.38 -179.21 REMARK 500 5 ASN A 163 16.72 57.04 REMARK 500 5 VAL A 166 172.63 -57.66 REMARK 500 6 CYS A 126 148.68 -170.52 REMARK 500 6 LEU A 130 13.42 -145.55 REMARK 500 6 ASP A 131 100.83 -40.15 REMARK 500 6 PHE A 140 131.42 -170.34 REMARK 500 6 LYS A 161 74.17 -168.95 REMARK 500 6 ARG A 171 52.72 -91.81 REMARK 500 7 ASP A 107 32.23 -140.61 REMARK 500 7 LEU A 130 -145.87 -107.21 REMARK 500 7 ILE A 133 -46.80 -140.37 REMARK 500 7 LYS A 161 68.44 -175.27 REMARK 500 8 PHE A 120 -72.73 -89.78 REMARK 500 8 LEU A 130 -144.81 -100.89 REMARK 500 8 LYS A 161 70.51 -174.18 REMARK 500 8 ASN A 163 15.38 58.99 REMARK 500 9 ASP A 107 48.13 -103.77 REMARK 500 9 CYS A 126 140.63 -170.15 REMARK 500 9 LYS A 161 67.94 -177.64 REMARK 500 9 ASN A 163 16.45 58.17 REMARK 500 10 ASP A 107 21.88 -148.12 REMARK 500 10 CYS A 126 131.48 -170.85 REMARK 500 10 LEU A 130 55.76 -150.69 REMARK 500 10 LYS A 161 75.05 -177.21 REMARK 500 11 LEU A 130 -165.91 -124.62 REMARK 500 11 ILE A 133 -43.76 -134.16 REMARK 500 11 ARG A 136 93.69 -47.59 REMARK 500 11 SER A 137 159.89 -42.09 REMARK 500 11 LYS A 161 74.68 -179.06 REMARK 500 11 VAL A 166 -179.39 -66.78 REMARK 500 12 LEU A 130 18.78 -150.76 REMARK 500 12 ASP A 131 105.94 -44.11 REMARK 500 13 CYS A 126 118.90 -169.57 REMARK 500 13 LYS A 129 73.79 -104.04 REMARK 500 13 LEU A 130 32.27 -151.42 REMARK 500 13 LYS A 161 64.94 -176.31 REMARK 500 14 LEU A 130 -157.90 -105.62 REMARK 500 14 ARG A 136 -175.05 -65.62 REMARK 500 15 LEU A 130 18.62 -150.65 REMARK 500 15 ASP A 131 99.30 -39.14 REMARK 500 15 LYS A 158 36.14 -87.80 REMARK 500 15 GLU A 159 48.96 -89.33 REMARK 500 16 LYS A 129 71.79 -106.58 REMARK 500 16 ASP A 131 107.03 -53.20 REMARK 500 16 LYS A 161 74.30 179.62 REMARK 500 16 ARG A 171 48.13 -92.07 REMARK 500 17 ASP A 107 16.61 -144.56 REMARK 500 17 LEU A 130 19.25 -143.80 REMARK 500 17 ASP A 131 99.35 -39.24 REMARK 500 17 PHE A 140 134.41 -170.44 REMARK 500 17 LYS A 161 73.51 -176.44 REMARK 500 17 ARG A 171 47.27 -92.41 REMARK 500 18 LEU A 130 -161.31 -118.51 REMARK 500 18 LYS A 161 66.31 177.55 REMARK 500 18 ASN A 163 15.33 59.50 REMARK 500 19 LEU A 130 35.03 -152.31 REMARK 500 19 GLN A 157 78.37 -112.65 REMARK 500 19 LYS A 161 83.25 -179.93 REMARK 500 19 ASN A 163 18.26 53.80 REMARK 500 20 LEU A 130 -144.46 -109.51 REMARK 500 20 LYS A 161 73.11 177.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 136 0.32 SIDE_CHAIN REMARK 500 1 ARG A 138 0.29 SIDE_CHAIN REMARK 500 1 ARG A 171 0.30 SIDE_CHAIN REMARK 500 2 ARG A 136 0.25 SIDE_CHAIN REMARK 500 2 ARG A 138 0.16 SIDE_CHAIN REMARK 500 2 ARG A 171 0.25 SIDE_CHAIN REMARK 500 3 ARG A 136 0.21 SIDE_CHAIN REMARK 500 3 ARG A 138 0.32 SIDE_CHAIN REMARK 500 3 ARG A 171 0.22 SIDE_CHAIN REMARK 500 4 ARG A 136 0.30 SIDE_CHAIN REMARK 500 4 ARG A 138 0.09 SIDE_CHAIN REMARK 500 4 ARG A 171 0.27 SIDE_CHAIN REMARK 500 5 ARG A 136 0.18 SIDE_CHAIN REMARK 500 5 ARG A 138 0.28 SIDE_CHAIN REMARK 500 5 ARG A 171 0.32 SIDE_CHAIN REMARK 500 6 ARG A 136 0.20 SIDE_CHAIN REMARK 500 6 ARG A 138 0.15 SIDE_CHAIN REMARK 500 6 ARG A 171 0.32 SIDE_CHAIN REMARK 500 7 ARG A 136 0.31 SIDE_CHAIN REMARK 500 7 ARG A 138 0.29 SIDE_CHAIN REMARK 500 7 ARG A 171 0.31 SIDE_CHAIN REMARK 500 8 ARG A 136 0.25 SIDE_CHAIN REMARK 500 8 ARG A 138 0.32 SIDE_CHAIN REMARK 500 8 ARG A 171 0.31 SIDE_CHAIN REMARK 500 9 ARG A 136 0.15 SIDE_CHAIN REMARK 500 9 ARG A 171 0.13 SIDE_CHAIN REMARK 500 10 ARG A 136 0.27 SIDE_CHAIN REMARK 500 10 ARG A 138 0.19 SIDE_CHAIN REMARK 500 10 ARG A 171 0.23 SIDE_CHAIN REMARK 500 11 ARG A 136 0.28 SIDE_CHAIN REMARK 500 11 ARG A 138 0.24 SIDE_CHAIN REMARK 500 11 ARG A 171 0.25 SIDE_CHAIN REMARK 500 12 ARG A 136 0.27 SIDE_CHAIN REMARK 500 12 ARG A 138 0.31 SIDE_CHAIN REMARK 500 12 ARG A 171 0.19 SIDE_CHAIN REMARK 500 13 ARG A 136 0.24 SIDE_CHAIN REMARK 500 13 ARG A 171 0.14 SIDE_CHAIN REMARK 500 14 ARG A 136 0.18 SIDE_CHAIN REMARK 500 14 ARG A 138 0.20 SIDE_CHAIN REMARK 500 14 ARG A 171 0.22 SIDE_CHAIN REMARK 500 15 ARG A 136 0.21 SIDE_CHAIN REMARK 500 15 ARG A 138 0.30 SIDE_CHAIN REMARK 500 16 ARG A 136 0.28 SIDE_CHAIN REMARK 500 16 ARG A 138 0.29 SIDE_CHAIN REMARK 500 16 ARG A 171 0.25 SIDE_CHAIN REMARK 500 17 ARG A 136 0.15 SIDE_CHAIN REMARK 500 17 ARG A 138 0.31 SIDE_CHAIN REMARK 500 17 ARG A 171 0.29 SIDE_CHAIN REMARK 500 18 ARG A 136 0.32 SIDE_CHAIN REMARK 500 18 ARG A 138 0.31 SIDE_CHAIN REMARK 500 18 ARG A 171 0.31 SIDE_CHAIN REMARK 500 19 ARG A 136 0.30 SIDE_CHAIN REMARK 500 19 ARG A 138 0.32 SIDE_CHAIN REMARK 500 19 ARG A 171 0.18 SIDE_CHAIN REMARK 500 20 ARG A 136 0.31 SIDE_CHAIN REMARK 500 20 ARG A 138 0.19 SIDE_CHAIN REMARK 500 20 ARG A 171 0.31 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HD0 RELATED DB: PDB
DBREF 1HD1 A 98 172 UNP Q14103 HNRPD_HUMAN 98 172
SEQRES 1 A 75 LYS MET PHE ILE GLY GLY LEU SER TRP ASP THR THR LYS SEQRES 2 A 75 LYS ASP LEU LYS ASP TYR PHE SER LYS PHE GLY GLU VAL SEQRES 3 A 75 VAL ASP CYS THR LEU LYS LEU ASP PRO ILE THR GLY ARG SEQRES 4 A 75 SER ARG GLY PHE GLY PHE VAL LEU PHE LYS GLU SER GLU SEQRES 5 A 75 SER VAL ASP LYS VAL MET ASP GLN LYS GLU HIS LYS LEU SEQRES 6 A 75 ASN GLY LYS VAL ILE ASP PRO LYS ARG ALA
HELIX 1 H1 LYS A 110 PHE A 120 5 11 HELIX 2 H2 SER A 148 GLN A 157 5 10
SHEET 1 S1 1 LYS A 98 GLY A 102 0 SHEET 1 S2 1 VAL A 123 LYS A 129 0 SHEET 1 S3 1 PHE A 140 PHE A 145 0 SHEET 1 S4 1 ASP A 168 ARG A 171 0
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000