10 20 30 40 50 60 70 80 1H9A - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE (CHOH(D) - NAD(P)) 06-MAR-01 1H9A
TITLE COMPLEX OF ACTIVE MUTANT (Q365->C) OF GLUCOSE 6-PHOSPHATE TITLE 2 DEHYDROGENASE FROM L. MESENTEROIDES WITH COENZYME NADP
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE 6-PHOSPHATE 1-DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: G6PD; COMPND 5 EC: 1.1.1.49; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEUCONOSTOC MESENTEROIDES; SOURCE 3 ORGANISM_TAXID: 1245; SOURCE 4 STRAIN: SU294; SOURCE 5 PLASMID: PLMZ; SOURCE 6 GENE: G6PD; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SU294; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PLMZ; SOURCE 11 EXPRESSION_SYSTEM_GENE: G6PD; SOURCE 12 OTHER_DETAILS: SITE DIRECTED MUTAGENESIS
KEYWDS OXIDOREDUCTASE (CHOH(D) - NAD(P)), GLUCOSE METABOLISM
EXPDTA X-RAY DIFFRACTION
AUTHOR M.J.ADAMS,C.E.NAYLOR,S.GOVER
REVDAT 2 24-FEB-09 1H9A 1 VERSN REVDAT 1 03-MAY-01 1H9A 0
JRNL AUTH C.E.NAYLOR,S.GOVER,A.K.BASAK,M.S.COSGROVE,H.R.LEVY, JRNL AUTH 2 M.J.ADAMS JRNL TITL NADP+ AND NAD+ BINDING TO THE DUAL COENZYME JRNL TITL 2 SPECIFIC ENZYME LEUCONOSTOC MESENTEROIDES GLUCOSE JRNL TITL 3 6-PHOSPHATE DEHYDROGENASE: DIFFERENT INTERDOMAIN JRNL TITL 4 HINGE ANGLES ARE SEEN IN DIFFERENT BINARY AND JRNL TITL 5 TERNARY COMPLEXES JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 57 635 2001 JRNL REFN ISSN 0907-4449 JRNL PMID 11320304 JRNL DOI 10.1107/S0907444901003420
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.S.COSGROVE,S.GOVER,C.E.NAYLOR, REMARK 1 AUTH 2 L.VANDEPUTTE-RUTTEN,M.J.ADAMS,H.R.LEVY REMARK 1 TITL AN EXAMINATION OF THE ROLE OF ASP-177 IN THE HIS- REMARK 1 TITL 2 ASP CATALYTIC DYAD OF LEUCONOSTOC MESENTEROIDES REMARK 1 TITL 3 GLUCOSE 6-PHOSPHATE DEHYDROGENASE: X-RAY STRUCTURE REMARK 1 TITL 4 AND PH DEPENDENCE OF KINETIC PARAMETERS OF THE REMARK 1 TITL 5 D177N MUTANT ENZYME REMARK 1 REF BIOCHEMISTRY V. 39 15002 2000 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 11106478 REMARK 1 DOI 10.1021/BI0014608 REMARK 1 REFERENCE 2 REMARK 1 AUTH P.ROWLAND,A.K.BASAK,S.GOVER,H.R.LEVY,M.J.ADAMS REMARK 1 TITL THE THREE-DIMENSIONAL STRUCTURE OF GLUCOSE REMARK 1 TITL 2 6-PHOSPHATE DEHYDROGENASE FROM LEUCONOSTOC REMARK 1 TITL 3 MESENTEROIDES REFINED AT 2 ANGSTROMS RESOLUTION REMARK 1 REF STRUCTURE V. 2 1073 1994 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 7881907 REMARK 1 DOI 10.1016/S0969-2126(94)00110-3 REMARK 1 REFERENCE 3 REMARK 1 AUTH M.J.ADAMS,A.K.BASAK,S.GOVER,P.ROWLAND,H.R.LEVY REMARK 1 TITL SITE-DIRECTED MUTAGENESIS TO FACILITATE X-RAY REMARK 1 TITL 2 STRUCTURAL STUDIES OF LEUCONOSTOC MESENTEROIDES REMARK 1 TITL 3 GLUCOSE 6-PHOSPHATE DEHYDROGENASE REMARK 1 REF PROTEIN SCI. V. 2 859 1993 REMARK 1 REFN ISSN 0961-8368 REMARK 1 PMID 8495203
REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.2 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 100000.00 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 32685 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM, USING XPLOR REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.8 REMARK 3 FREE R VALUE TEST SET COUNT : 2572 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.16 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.24 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.3 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2606 REMARK 3 BIN R VALUE (WORKING SET) : 0.316 REMARK 3 BIN FREE R VALUE : 0.323 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.7 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 216 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3837 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 191 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : 0.35 REMARK 3 LOW RESOLUTION CUTOFF (A) : 21.2 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.264 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.53 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.01 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.58 ; 1.5 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.48 ; 2.0 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.58 ; 1.5 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.48 ; 2.0 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARAM19.SOL REMARK 3 PARAMETER FILE 3 : NADP.PAR REMARK 3 PARAMETER FILE 4 : SO4.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH19.SOL REMARK 3 TOPOLOGY FILE 3 : NADP.TOP REMARK 3 TOPOLOGY FILE 4 : SO4.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT WAS MODELLED WITH REMARK 3 DENSITY 0.299 E/A**3 AND TEMPERATURE FACTOR 25.8 A**2. THE REMARK 3 OCCUPANCY OF COENZYME NAP HAS BEEN REDUCED TO 0.75 IN ORDER TO REMARK 3 MATCH ITS TEMPERATURE FACTORS TO THOSE OF ATOMS IN THE REMARK 3 NEIGHBOURING PROTEIN RESIDUES. THE REFINED MODEL ALSO INCLUDES REMARK 3 A SULFATE ION WITH OCCUPANCY 0.5.
REMARK 4 REMARK 4 1H9A COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-MAR-01. REMARK 100 THE PDBE ID CODE IS EBI-5810.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-94 REMARK 200 TEMPERATURE (KELVIN) : 293.0 REMARK 200 PH : 5.80 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32868 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.50600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: SUBUNIT 'A' OF 1DPG REMARK 200 REMARK 200 REMARK: RIGID-BODY MINIMISATION USED X-PLOR 3.1
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.7 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP VAPOUR DIFFUSION, REMARK 280 2+2 MICROLITER DROPS. REMARK 280 THE PROTEIN AT 5MG/ML IN 100MM TRIS-HCL AT PH 7.5 WITH REMARK 280 0.5MM NADP+. DROPS EQUILIBRIATED AGAINST 1.7M UNBUFFERED REMARK 280 AMMONIUM SULFATE.
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.80000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.40000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 80.80000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.40000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 80.80000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 40.40000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 80.80000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 40.40000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 80.80000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 HOH A2107 LIES ON A SPECIAL POSITION.
REMARK 400 REMARK 400 COMPOUND REMARK 400 CHAIN A ENGINEERED MUTATION GLN365CYS REMARK 400 BETA-D-GLUCOSE 6-PHOSPHATE + NADP(+) = D-GLUCONO-DELTA-LACTONE REMARK 400 6-PHOSPHATE + NADPH.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 36 -90.99 -120.51 REMARK 500 ALA A 45 -179.56 -174.54 REMARK 500 ASP A 67 -57.11 -122.34 REMARK 500 SER A 117 54.40 -100.54 REMARK 500 GLU A 221 -135.75 56.46 REMARK 500 ASN A 239 -74.09 -93.58 REMARK 500 PHE A 256 35.98 -91.49 REMARK 500 SER A 294 -148.91 -144.31 REMARK 500 PHE A 297 70.13 -102.80 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: PROCHECK, WITH IDENTIFICATION REMARK 650 CORRESPONDING TO 2.0A L. MESENTEROIDES STRUCTURE, 1DPG. REMARK 650 HELIX_ID: A,BEND AT K21 IS CONSEQUENCE OF CONSERVED P24. REMARK 650 HELIX_ID: B,THE LAST TURN IS 3_10 (CLASS 5). REMARK 650 HELIX_ID: D,THE FIRST TURN IS 3_10 (CLASS 5). REMARK 650 HELIX_ID: H,GLY 231 BRIDGES H AND I', SO IS NOT HELICAL. REMARK 650 HELIX_ID: I',PART OF HELIX I IN 1DPG. RESIDUES 235-239 REMARK 650 DISTORTED BY SIDECHAIN INTERACTION OF N239 WITH D235.
REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: INITIAL AND TERMINAL RESIDUES ARE AS REMARK 700 DEFINED BY PROCHECK. REGISTRATION IS AS GIVEN BY HYDROGEN REMARK 700 BONDS AND IN THE CASE OF SHEET COE INVOLVES RESIDUES THAT REMARK 700 IMMEDIATELY PRECEDE EACH SHEET ELEMENT. THIS IS DONE TO REMARK 700 PRESERVE OBSERVED CONSISTENCY WITH NATIVE STRUCTURE 1DPG.
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 799
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DPG RELATED DB: PDB REMARK 900 GLUCOSE 6-PHOSPHATE DEHYDROGENASE FROM REMARK 900 LEUCONOSTOC MESENTEROIDES REMARK 900 RELATED ID: 1E77 RELATED DB: PDB REMARK 900 COMPLEX OF ACTIVE MUTANT (Q365->C) OF REMARK 900 GLUCOSE 6-PHOSPHATE DEHYDROGENASE FROM REMARK 900 LEUCONOSTOC MESENTEROIDES WITH SUBSTRATE REMARK 900 RELATED ID: 1E7M RELATED DB: PDB REMARK 900 ACTIVE SITE MUTANT (D177->N) OF GLUCOSE 6 REMARK 900 -PHOSPHATE DEHYDROGENASE FROM LEUCONOSTOC REMARK 900 MESENTEROIDES REMARK 900 RELATED ID: 1E7Y RELATED DB: PDB REMARK 900 ACTIVE SITE MUTANT (D177->N) OF GLUCOSE 6 REMARK 900 -PHOSPHATE DEHYDROGENASE FROM LEUCONOSTOC REMARK 900 MESENTEROIDES COMPLEXED WITH SUBSTRATE AND REMARK 900 NADPH REMARK 900 RELATED ID: 1H93 RELATED DB: PDB REMARK 900 ACTIVE MUTANT (S215->C) OF GLUCOSE 6- REMARK 900 PHOSPHATE DEHYDROGENASE FROM LEUCONOSTOC REMARK 900 MESENTEROIDES REMARK 900 RELATED ID: 1H94 RELATED DB: PDB REMARK 900 COMPLEX OF ACTIVE MUTANT (S215->C) OF REMARK 900 GLUCOSE 6-PHOSPHATE DEHYDROGENASE FROM L. REMARK 900 MESENTEROIDES WITH COENZYME NAD REMARK 900 RELATED ID: 2DPG RELATED DB: PDB REMARK 900 COMPLEX OF INACTIVE MUTANT (H240->N) OF REMARK 900 GLUCOSE 6-PHOSPHATE DEHYDROGENASE FROM REMARK 900 LEUCONOSTOC MESENTEROIDES WITH NADP+ REMARK 900 RELATED ID: 1H9B RELATED DB: PDB REMARK 900 ACTIVE MUTANT (Q365->C) OF GLUCOSE 6- REMARK 900 PHOSPHATE DEHYDROGENASE FROM LEUCONOSTOC REMARK 900 MESENTEROIDES
DBREF 1H9A A 1 485 UNP P11411 G6PD_LEUME 1 485
SEQADV 1H9A CYS A 365 UNP P11411 GLN 365 ENGINEERED MUTATION
SEQRES 1 A 485 VAL SER GLU ILE LYS THR LEU VAL THR PHE PHE GLY GLY SEQRES 2 A 485 THR GLY ASP LEU ALA LYS ARG LYS LEU TYR PRO SER VAL SEQRES 3 A 485 PHE ASN LEU TYR LYS LYS GLY TYR LEU GLN LYS HIS PHE SEQRES 4 A 485 ALA ILE VAL GLY THR ALA ARG GLN ALA LEU ASN ASP ASP SEQRES 5 A 485 GLU PHE LYS GLN LEU VAL ARG ASP SER ILE LYS ASP PHE SEQRES 6 A 485 THR ASP ASP GLN ALA GLN ALA GLU ALA PHE ILE GLU HIS SEQRES 7 A 485 PHE SER TYR ARG ALA HIS ASP VAL THR ASP ALA ALA SER SEQRES 8 A 485 TYR ALA VAL LEU LYS GLU ALA ILE GLU GLU ALA ALA ASP SEQRES 9 A 485 LYS PHE ASP ILE ASP GLY ASN ARG ILE PHE TYR MET SER SEQRES 10 A 485 VAL ALA PRO ARG PHE PHE GLY THR ILE ALA LYS TYR LEU SEQRES 11 A 485 LYS SER GLU GLY LEU LEU ALA ASP THR GLY TYR ASN ARG SEQRES 12 A 485 LEU MET ILE GLU LYS PRO PHE GLY THR SER TYR ASP THR SEQRES 13 A 485 ALA ALA GLU LEU GLN ASN ASP LEU GLU ASN ALA PHE ASP SEQRES 14 A 485 ASP ASN GLN LEU PHE ARG ILE ASP HIS TYR LEU GLY LYS SEQRES 15 A 485 GLU MET VAL GLN ASN ILE ALA ALA LEU ARG PHE GLY ASN SEQRES 16 A 485 PRO ILE PHE ASP ALA ALA TRP ASN LYS ASP TYR ILE LYS SEQRES 17 A 485 ASN VAL GLN VAL THR LEU SER GLU VAL LEU GLY VAL GLU SEQRES 18 A 485 GLU ARG ALA GLY TYR TYR ASP THR ALA GLY ALA LEU LEU SEQRES 19 A 485 ASP MET ILE GLN ASN HIS THR MET GLN ILE VAL GLY TRP SEQRES 20 A 485 LEU ALA MET GLU LYS PRO GLU SER PHE THR ASP LYS ASP SEQRES 21 A 485 ILE ARG ALA ALA LYS ASN ALA ALA PHE ASN ALA LEU LYS SEQRES 22 A 485 ILE TYR ASP GLU ALA GLU VAL ASN LYS TYR PHE VAL ARG SEQRES 23 A 485 ALA GLN TYR GLY ALA GLY ASP SER ALA ASP PHE LYS PRO SEQRES 24 A 485 TYR LEU GLU GLU LEU ASP VAL PRO ALA ASP SER LYS ASN SEQRES 25 A 485 ASN THR PHE ILE ALA GLY GLU LEU GLN PHE ASP LEU PRO SEQRES 26 A 485 ARG TRP GLU GLY VAL PRO PHE TYR VAL ARG SER GLY LYS SEQRES 27 A 485 ARG LEU ALA ALA LYS GLN THR ARG VAL ASP ILE VAL PHE SEQRES 28 A 485 LYS ALA GLY THR PHE ASN PHE GLY SER GLU GLN GLU ALA SEQRES 29 A 485 CYS GLU ALA VAL LEU SER ILE ILE ILE ASP PRO LYS GLY SEQRES 30 A 485 ALA ILE GLU LEU LYS LEU ASN ALA LYS SER VAL GLU ASP SEQRES 31 A 485 ALA PHE ASN THR ARG THR ILE ASP LEU GLY TRP THR VAL SEQRES 32 A 485 SER ASP GLU ASP LYS LYS ASN THR PRO GLU PRO TYR GLU SEQRES 33 A 485 ARG MET ILE HIS ASP THR MET ASN GLY ASP GLY SER ASN SEQRES 34 A 485 PHE ALA ASP TRP ASN GLY VAL SER ILE ALA TRP LYS PHE SEQRES 35 A 485 VAL ASP ALA ILE SER ALA VAL TYR THR ALA ASP LYS ALA SEQRES 36 A 485 PRO LEU GLU THR TYR LYS SER GLY SER MET GLY PRO GLU SEQRES 37 A 485 ALA SER ASP LYS LEU LEU ALA ALA ASN GLY ASP ALA TRP SEQRES 38 A 485 VAL PHE LYS GLY
HET SO4 A 610 5 HET NAP A 799 48
HETNAM SO4 SULFATE ION HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NAP PHOSPHATE
HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE
FORMUL 2 SO4 O4 S 2- FORMUL 3 NAP C21 H28 N7 O17 P3 FORMUL 4 HOH *191(H2 O1)
HELIX 1 A ASP A 16 LYS A 31 1 SEE REMARK 650 16 HELIX 2 B ASP A 51 PHE A 65 1 SEE REMARK 650 15 HELIX 3 B' GLN A 69 ILE A 76 1 8 HELIX 4 C TYR A 92 PHE A 106 1 15 HELIX 5 D PRO A 120 SER A 132 1 SEE REMARK 650 13 HELIX 6 E TYR A 154 LEU A 164 1 11 HELIX 7 F ASN A 187 GLY A 194 1 8 HELIX 8 G PRO A 196 ASP A 199 1 4 HELIX 9 H ALA A 224 ALA A 230 1 SEE REMARK 650 7 HELIX 10 I' ALA A 232 ASP A 235 1 SEE REMARK 650 4 HELIX 11 I HIS A 240 ALA A 249 1 10 HELIX 12 J ASP A 258 PHE A 269 1 12 HELIX 13 K GLU A 277 TYR A 283 1 7 HELIX 14 L ASP A 405 ASN A 410 1 6 HELIX 15 M PRO A 414 ASN A 424 1 11 HELIX 16 N TRP A 433 THR A 451 1 19 HELIX 17 O GLU A 468 ALA A 475 1 8
SHEET 1 COE 6 PHE A 79 ALA A 83 0 SHEET 2 COE 6 PHE A 39 ALA A 45 1 N ILE A 41 O HIS A 78 SHEET 3 COE 6 THR A 6 PHE A 11 1 N THR A 6 O HIS A 38 SHEET 4 COE 6 ARG A 112 MET A 116 1 O ASN A 111 N LEU A 7 SHEET 5 COE 6 ASN A 142 ILE A 146 1 O TYR A 141 N ARG A 112 SHEET 6 COE 6 LEU A 173 ARG A 175 1 O GLN A 172 N LEU A 144 SHEET 1 DIM 9 THR A 394 THR A 402 0 SHEET 2 DIM 9 ALA A 378 LYS A 386 -1 N ILE A 379 O TRP A 401 SHEET 3 DIM 9 VAL A 368 ASP A 374 -1 N VAL A 368 O LYS A 382 SHEET 4 DIM 9 GLN A 344 PHE A 351 -1 O THR A 345 N ILE A 373 SHEET 5 DIM 9 ILE A 207 SER A 215 -1 O ASN A 209 N VAL A 350 SHEET 6 DIM 9 PHE A 332 GLY A 337 1 N TYR A 333 O VAL A 210 SHEET 7 DIM 9 PHE A 315 LEU A 320 -1 N ILE A 316 O SER A 336 SHEET 8 DIM 9 PHE A 284 TYR A 289 -1 N VAL A 285 O ALA A 317 SHEET 9 DIM 9 GLU A 458 TYR A 460 1 O GLU A 458 N GLN A 288
CISPEP 1 LYS A 148 PRO A 149 0 -0.16 CISPEP 2 ASP A 374 PRO A 375 0 0.12
SITE 1 AC1 3 HIS A 178 TYR A 179 LYS A 182 SITE 1 AC2 20 GLY A 12 THR A 14 GLY A 15 ASP A 16 SITE 2 AC2 20 LEU A 17 ALA A 45 ARG A 46 GLN A 47 SITE 3 AC2 20 HIS A 84 ASP A 85 VAL A 86 SER A 117 SITE 4 AC2 20 VAL A 118 GLU A 147 LYS A 148 HOH A2006 SITE 5 AC2 20 HOH A2041 HOH A2189 HOH A2190 HOH A2191
CRYST1 136.700 136.700 121.200 90.00 90.00 120.00 P 62 2 2 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.007315 0.004223 0.000000 0.00000
SCALE2 0.000000 0.008447 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008251 0.00000