10 20 30 40 50 60 70 80 1H1J - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA BINDING 16-JUL-02 1H1J
TITLE THE SAP DOMAIN IS A DNA-BINDING DOMAIN CAPABLE OF BINDING TITLE 2 S/MAR DNA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: THO1 PROTEIN; COMPND 3 CHAIN: S; COMPND 4 FRAGMENT: SAP DOMAIN, RESIDUES 2-50; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKERS YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C41; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGRO
KEYWDS SAP DOMAIN, DNA BINDING
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR J.O.B.JACOBSEN,S.M.V.FREUND,M.BYCROFT
REVDAT 2 24-FEB-09 1H1J 1 VERSN REVDAT 1 08-AUG-02 1H1J 0
JRNL AUTH J.O.B.JACOBSEN,S.M.V.FREUND,M.BYCROFT JRNL TITL THE SAP DOMAIN IS A DNA-BINDING DOMAIN CAPABLE OF JRNL TITL 2 BINDING S/MAR DNA JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.ARAVIND,E.V.KOONIN REMARK 1 TITL SAP - A PUTATIVE DNA-BINDING MOTIF INVOLVED IN REMARK 1 TITL 2 CHROMOSOMAL ORGANIZATION REMARK 1 REF TRENDS BIOCHEM.SCI. V. 25 112 2000 REMARK 1 REFN ISSN 0167-7640 REMARK 1 PMID 10694879 REMARK 1 DOI 10.1016/S0968-0004(99)01537-6 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.I.PIRUAT,A.AGUILERA REMARK 1 TITL A NOVEL YEAST GENE, THO2, IS INVOLVED IN RNA POL REMARK 1 TITL 2 II TRANSCRIPTION AND PROVIDES NEW EVIDENCE FOR REMARK 1 TITL 3 TRANSCRIPTIONAL ELONGATION-ASSOCIATED REMARK 1 TITL 4 RECOMBINATION. REMARK 1 REF EMBO J. V. 17 4859 1998 REMARK 1 REFN ISSN 0261-4189 REMARK 1 PMID 9707445 REMARK 1 DOI 10.1093/EMBOJ/17.16.4859
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN REMARK 3 THE JRNL CITATION ABOVE. RESIDUES 45-51 ARE DISORDERED WITH NO REMARK 3 DEFINED STRUCTURE AND NOT INCLUDED IN THE COORDINATES.
REMARK 4 REMARK 4 1H1J COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JUL-02. REMARK 100 THE PDBE ID CODE IS EBI-11077.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 150MM REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.5MM REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 13C-FILTERED NOESY; TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 REMARK 210 SPECTROMETER MODEL : DRX 500 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX, SPARKY, XPLOR 3.8 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST NOE ENERGIES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: STRUCTURE DETERMINED USING STANDARD REMARK 210 TRIPLE-RESONANCE AND 3D 1H,13C- NOESY/TOCSY EXPERIMENTS REMARK 210 ON 13C, 15N-LABELED PROTEIN.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU S 45 REMARK 465 SER S 46 REMARK 465 GLU S 47 REMARK 465 VAL S 48 REMARK 465 SER S 49 REMARK 465 PRO S 50 REMARK 465 GLN S 51
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER S 2 -52.25 -151.48 REMARK 500 1 ALA S 3 -178.19 49.26 REMARK 500 1 ASP S 4 -95.69 -121.11 REMARK 500 1 SER S 6 -64.38 -3.11 REMARK 500 1 SER S 7 48.15 -153.19 REMARK 500 2 ASP S 4 -95.46 -128.84 REMARK 500 2 SER S 6 -70.08 1.99 REMARK 500 2 SER S 7 56.84 -151.92 REMARK 500 2 GLU S 41 73.97 42.69 REMARK 500 3 SER S 2 179.71 64.95 REMARK 500 3 ASP S 4 -95.38 -128.35 REMARK 500 3 SER S 6 -60.58 -6.55 REMARK 500 3 SER S 7 49.67 -152.96 REMARK 500 3 GLU S 41 96.68 65.31 REMARK 500 4 ALA S 3 95.17 57.39 REMARK 500 4 ASP S 4 -94.87 -124.60 REMARK 500 4 SER S 6 -70.92 4.12 REMARK 500 4 SER S 7 55.90 -151.90 REMARK 500 4 SER S 23 -170.99 -53.00 REMARK 500 5 SER S 2 -88.29 52.76 REMARK 500 5 ALA S 3 13.23 59.74 REMARK 500 5 ASP S 4 -95.77 -124.28 REMARK 500 5 SER S 6 -74.97 8.07 REMARK 500 5 SER S 7 55.49 -152.32 REMARK 500 5 SER S 23 151.67 -39.20 REMARK 500 6 SER S 2 -58.46 -167.96 REMARK 500 6 ALA S 3 159.82 172.46 REMARK 500 6 ASP S 4 -94.97 -118.02 REMARK 500 6 SER S 6 -62.23 -5.17 REMARK 500 6 SER S 7 50.72 -152.64 REMARK 500 6 SER S 23 -172.43 -50.07 REMARK 500 6 SER S 42 -177.27 55.91 REMARK 500 7 ASP S 4 -95.48 -117.69 REMARK 500 7 SER S 6 -69.10 1.28 REMARK 500 7 SER S 7 53.91 -151.36 REMARK 500 8 ALA S 3 91.18 -162.60 REMARK 500 8 ASP S 4 -95.13 -123.69 REMARK 500 8 SER S 6 -55.27 -11.22 REMARK 500 8 SER S 7 48.80 -154.43 REMARK 500 8 SER S 23 -167.66 -72.12 REMARK 500 8 SER S 42 77.67 -176.75 REMARK 500 9 ASP S 4 -95.12 -120.79 REMARK 500 9 SER S 6 -64.18 -3.81 REMARK 500 9 SER S 7 56.17 -153.17 REMARK 500 9 SER S 23 -170.77 -52.53 REMARK 500 9 GLU S 41 -152.38 42.11 REMARK 500 9 SER S 42 -158.02 -73.62 REMARK 500 10 ASP S 4 -95.57 -125.65 REMARK 500 10 SER S 6 -68.79 3.01 REMARK 500 10 SER S 7 49.16 -154.47 REMARK 500 10 SER S 42 -74.44 -85.74 REMARK 500 11 SER S 2 76.29 46.07 REMARK 500 11 ASP S 4 -95.67 -128.71 REMARK 500 11 SER S 6 -55.10 -10.75 REMARK 500 11 SER S 7 44.29 -153.91 REMARK 500 11 SER S 23 -176.85 -47.60 REMARK 500 11 GLU S 41 -93.07 45.01 REMARK 500 12 SER S 2 48.18 -169.64 REMARK 500 12 ALA S 3 163.61 174.62 REMARK 500 12 ASP S 4 -95.57 -118.54 REMARK 500 12 SER S 6 -61.40 -5.12 REMARK 500 12 SER S 7 47.51 -153.77 REMARK 500 12 SER S 23 -173.84 -49.09 REMARK 500 13 SER S 2 53.55 -100.84 REMARK 500 13 ALA S 3 71.98 42.72 REMARK 500 13 ASP S 4 -95.09 -128.44 REMARK 500 13 SER S 6 -72.09 4.95 REMARK 500 13 SER S 7 57.75 -150.84 REMARK 500 13 SER S 23 177.00 -45.61 REMARK 500 14 SER S 2 -159.08 -175.84 REMARK 500 14 ALA S 3 133.32 63.33 REMARK 500 14 ASP S 4 -95.10 -128.16 REMARK 500 14 SER S 6 -62.14 -5.86 REMARK 500 14 SER S 7 52.46 -153.96 REMARK 500 14 SER S 42 -63.75 68.42 REMARK 500 15 SER S 2 -176.83 -55.62 REMARK 500 15 ASP S 4 -95.82 -128.78 REMARK 500 15 SER S 6 -50.76 -14.41 REMARK 500 15 SER S 7 43.56 -151.17 REMARK 500 15 SER S 23 176.48 -45.08 REMARK 500 15 GLU S 41 -69.27 65.39 REMARK 500 15 SER S 42 -179.45 -58.86 REMARK 500 16 ALA S 3 57.08 -106.32 REMARK 500 16 ASP S 4 -95.74 -129.03 REMARK 500 16 SER S 6 -67.15 0.07 REMARK 500 16 SER S 7 54.81 -153.66 REMARK 500 17 ALA S 3 -135.57 -159.09 REMARK 500 17 ASP S 4 -94.62 -114.69 REMARK 500 17 SER S 6 -62.83 -5.20 REMARK 500 17 SER S 7 54.50 -153.31 REMARK 500 17 SER S 23 -167.49 -79.92 REMARK 500 17 GLU S 41 102.01 64.54 REMARK 500 18 ALA S 3 64.74 -172.53 REMARK 500 18 ASP S 4 -95.95 -120.33 REMARK 500 18 SER S 6 -46.15 -18.23 REMARK 500 18 SER S 7 40.58 -151.55 REMARK 500 18 SER S 23 -168.07 -54.37 REMARK 500 18 GLU S 41 170.95 52.66 REMARK 500 18 SER S 42 -166.89 53.35 REMARK 500 19 ASP S 4 -95.19 -118.45 REMARK 500 19 SER S 6 -66.89 -0.83 REMARK 500 19 SER S 7 54.78 -152.47 REMARK 500 20 ASP S 4 -95.12 -128.90 REMARK 500 20 SER S 6 -61.49 -5.83 REMARK 500 20 SER S 7 55.73 -153.51 REMARK 500 20 SER S 23 -166.98 -77.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG S 20 0.19 SIDE CHAIN REMARK 500 1 ARG S 34 0.27 SIDE CHAIN REMARK 500 2 ARG S 20 0.32 SIDE CHAIN REMARK 500 2 ARG S 34 0.23 SIDE CHAIN REMARK 500 3 ARG S 20 0.26 SIDE CHAIN REMARK 500 3 ARG S 34 0.22 SIDE CHAIN REMARK 500 4 ARG S 20 0.22 SIDE CHAIN REMARK 500 4 ARG S 34 0.30 SIDE CHAIN REMARK 500 5 ARG S 20 0.28 SIDE CHAIN REMARK 500 5 ARG S 34 0.21 SIDE CHAIN REMARK 500 6 ARG S 20 0.29 SIDE CHAIN REMARK 500 6 ARG S 34 0.20 SIDE CHAIN REMARK 500 7 ARG S 20 0.28 SIDE CHAIN REMARK 500 7 ARG S 34 0.16 SIDE CHAIN REMARK 500 8 ARG S 20 0.29 SIDE CHAIN REMARK 500 8 ARG S 34 0.29 SIDE CHAIN REMARK 500 9 ARG S 20 0.27 SIDE CHAIN REMARK 500 10 ARG S 20 0.31 SIDE CHAIN REMARK 500 10 ARG S 34 0.21 SIDE CHAIN REMARK 500 11 ARG S 20 0.31 SIDE CHAIN REMARK 500 11 ARG S 34 0.23 SIDE CHAIN REMARK 500 12 ARG S 20 0.20 SIDE CHAIN REMARK 500 12 ARG S 34 0.24 SIDE CHAIN REMARK 500 13 ARG S 20 0.26 SIDE CHAIN REMARK 500 13 ARG S 34 0.32 SIDE CHAIN REMARK 500 14 ARG S 20 0.31 SIDE CHAIN REMARK 500 14 ARG S 34 0.32 SIDE CHAIN REMARK 500 15 ARG S 20 0.18 SIDE CHAIN REMARK 500 15 ARG S 34 0.32 SIDE CHAIN REMARK 500 16 ARG S 20 0.23 SIDE CHAIN REMARK 500 16 ARG S 34 0.29 SIDE CHAIN REMARK 500 17 ARG S 20 0.30 SIDE CHAIN REMARK 500 17 ARG S 34 0.30 SIDE CHAIN REMARK 500 18 ARG S 20 0.32 SIDE CHAIN REMARK 500 18 ARG S 34 0.32 SIDE CHAIN REMARK 500 19 ARG S 20 0.31 SIDE CHAIN REMARK 500 19 ARG S 34 0.32 SIDE CHAIN REMARK 500 20 ARG S 20 0.31 SIDE CHAIN REMARK 500 20 ARG S 34 0.24 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 999 REMARK 999 SEQUENCE REMARK 999 GLY 1, THROMBIN CLEAVAGE SITE INSERTION REMARK 999 SER 2, THROMBIN CLEAVAGE SITE INSERTION
DBREF 1H1J S 1 2 PDB 1H1J 1H1J 1 2 DBREF 1H1J S 3 51 UNP P40040 THO1_YEAST 2 50
SEQRES 1 S 51 GLY SER ALA ASP TYR SER SER LEU THR VAL VAL GLN LEU SEQRES 2 S 51 LYS ASP LEU LEU THR LYS ARG ASN LEU SER VAL GLY GLY SEQRES 3 S 51 LEU LYS ASN GLU LEU VAL GLN ARG LEU ILE LYS ASP ASP SEQRES 4 S 51 GLU GLU SER LYS GLY GLU SER GLU VAL SER PRO GLN
HELIX 1 1 ASP S 4 LEU S 8 5 5 HELIX 2 2 VAL S 10 ARG S 20 1 11 HELIX 3 3 LEU S 27 GLU S 40 1 14
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000